prot_Ecto-sp13_S_contig69691.17979.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig69691.17979.1
Unique Nameprot_Ecto-sp13_S_contig69691.17979.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length72
Homology
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BLAST of mRNA_Ecto-sp13_S_contig69691.17979.1 vs. uniprot
Match: A0A6H5JTL0_9PHAE (GT23 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL0_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 4.110e-31
Identity = 65/72 (90.28%), Postives = 66/72 (91.67%), Query Frame = 0 
Query:    1 MLAMMADSFDRNEKARTVRRGGRPSRVSGTPRAALRASVVLAMLGRCSSYVRGAVAEAEDGSKTPALSLELD 72
            MLAMMADS DRNEKARTVRRGGRP RV GTP AALRASVVL MLGRCSSYVRGAVAEAEDG +TPALSLELD
Sbjct:    1 MLAMMADSSDRNEKARTVRRGGRPRRVGGTPAAALRASVVLVMLGRCSSYVRGAVAEAEDGLETPALSLELD 72
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BLAST of mRNA_Ecto-sp13_S_contig69691.17979.1 vs. uniprot
Match: D7G435_ECTSI (Alpha-(1,6)-fucosyltransferase, family GT23 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G435_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.560e-24
Identity = 59/74 (79.73%), Postives = 63/74 (85.14%), Query Frame = 0 
Query:    1 MLAMMADSFDRNEKARTVRRGGRPSRVSGTPRAALRASVVLAMLGRCSSYVRGA--VAEAEDGSKTPALSLELD 72
            MLA MADS  RNEK+RTVRRGGRP R   TPRAAL+ASVVLA+LGRCSSYVR    VAEAEDGSKTPALS+ELD
Sbjct:    1 MLATMADSSHRNEKSRTVRRGGRPRRGGCTPRAALQASVVLAVLGRCSSYVRAEAEVAEAEDGSKTPALSMELD 74
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69691.17979.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTL0_9PHAE4.110e-3190.28GT23 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G435_ECTSI1.560e-2479.73Alpha-(1,6)-fucosyltransferase, family GT23 n=1 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..32
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 33..44
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 54..72
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 45..53
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..53

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69691contigEcto-sp13_S_contig69691:445..660 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69691.17979.1mRNA_Ecto-sp13_S_contig69691.17979.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig69691 436..660 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig69691.17979.1 ID=prot_Ecto-sp13_S_contig69691.17979.1|Name=mRNA_Ecto-sp13_S_contig69691.17979.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp
MLAMMADSFDRNEKARTVRRGGRPSRVSGTPRAALRASVVLAMLGRCSSY
VRGAVAEAEDGSKTPALSLELD
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