mRNA_Ecto-sp13_S_contig69691.17979.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69691.17979.1
Unique NamemRNA_Ecto-sp13_S_contig69691.17979.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig69691.17979.1 vs. uniprot
Match: A0A6H5JTL0_9PHAE (GT23 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL0_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 6.480e-31
Identity = 65/72 (90.28%), Postives = 66/72 (91.67%), Query Frame = 1 
Query:   10 MLAMMADSFDRNEKARTVRRGGRPSRVSGTPRAALRASVVLAMLGRCSSYVRGAVAEAEDGSKTPALSLELD 225
            MLAMMADS DRNEKARTVRRGGRP RV GTP AALRASVVL MLGRCSSYVRGAVAEAEDG +TPALSLELD
Sbjct:    1 MLAMMADSSDRNEKARTVRRGGRPRRVGGTPAAALRASVVLVMLGRCSSYVRGAVAEAEDGLETPALSLELD 72
[Close]
BLAST of mRNA_Ecto-sp13_S_contig69691.17979.1 vs. uniprot
Match: D7G435_ECTSI (Alpha-(1,6)-fucosyltransferase, family GT23 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G435_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 2.440e-24
Identity = 59/74 (79.73%), Postives = 63/74 (85.14%), Query Frame = 1 
Query:   10 MLAMMADSFDRNEKARTVRRGGRPSRVSGTPRAALRASVVLAMLGRCSSYVRGA--VAEAEDGSKTPALSLELD 225
            MLA MADS  RNEK+RTVRRGGRP R   TPRAAL+ASVVLA+LGRCSSYVR    VAEAEDGSKTPALS+ELD
Sbjct:    1 MLATMADSSHRNEKSRTVRRGGRPRRGGCTPRAALQASVVLAVLGRCSSYVRAEAEVAEAEDGSKTPALSMELD 74
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69691.17979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTL0_9PHAE6.480e-3190.28GT23 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G435_ECTSI2.440e-2479.73Alpha-(1,6)-fucosyltransferase, family GT23 n=1 Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69691contigEcto-sp13_S_contig69691:436..660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score104.0
Seed ortholog evalue3e-20
Seed eggNOG ortholog2880.D7G435
Model size225
KEGG koko:K00717
KEGG ReactionR05988,R09319
KEGG Pathwayko00510,ko00513,ko00533,ko01100,ko05202,map00510,map00513,map00533,map01100,map05202
KEGG ModuleM00075
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.glycoprotein 6-alpha-L-fucosyltransferase activity
EggNOG OGsKOG3705@1,KOG3705@2759
EC2.4.1.68
Cds size216
COG Functional cat.M
CAZyGT23
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463956.3813288-UTR-Ecto-sp13_S_contig69691:435..4441681463956.3813288-UTR-Ecto-sp13_S_contig69691:435..444Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig69691 436..444 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463956.402549-CDS-Ecto-sp13_S_contig69691:444..6601681463956.402549-CDS-Ecto-sp13_S_contig69691:444..660Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69691 445..660 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69691.17979.1prot_Ecto-sp13_S_contig69691.17979.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69691 445..660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69691.17979.1

>prot_Ecto-sp13_S_contig69691.17979.1 ID=prot_Ecto-sp13_S_contig69691.17979.1|Name=mRNA_Ecto-sp13_S_contig69691.17979.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp
MLAMMADSFDRNEKARTVRRGGRPSRVSGTPRAALRASVVLAMLGRCSSY
VRGAVAEAEDGSKTPALSLELD
back to top

mRNA from alignment at Ecto-sp13_S_contig69691:436..660+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69691.17979.1 ID=mRNA_Ecto-sp13_S_contig69691.17979.1|Name=mRNA_Ecto-sp13_S_contig69691.17979.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69691:436..660+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAAAGGGAATGCTGGCGATGATGGCGGACTCCTTCGACAGGAATGAAAA
AGCCAGAACCGTCCGCCGCGGGGGGCGGCCCAGCCGTGTCAGCGGCACAC
CAAGGGCGGCGCTGCGGGCTTCGGTGGTGCTGGCCATGCTCGGGAGATGT
AGTAGCTACGTTCGTGGCGCGGTCGCAGAGGCGGAGGATGGTTCGAAGAC
GCCCGCCCTCTCTTTGGAGCTGGAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69691:436..660+

>mRNA_Ecto-sp13_S_contig69691.17979.1 ID=mRNA_Ecto-sp13_S_contig69691.17979.1|Name=mRNA_Ecto-sp13_S_contig69691.17979.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69691:436..660+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGCGATGATGGCGGACTCCTTCGACAGGAATGAAAAAGCCAGAAC
CGTCCGCCGCGGGGGGCGGCCCAGCCGTGTCAGCGGCACACCAAGGGCGG
CGCTGCGGGCTTCGGTGGTGCTGGCCATGCTCGGGAGATGTAGTAGCTAC
GTTCGTGGCGCGGTCGCAGAGGCGGAGGATGGTTCGAAGACGCCCGCCCT
CTCTTTGGAGCTGGAC
back to top