mRNA_Ecto-sp13_S_contig69657.17976.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69657.17976.1
Unique NamemRNA_Ecto-sp13_S_contig69657.17976.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig69657.17976.1 vs. uniprot
Match: UPI00141D85C7 (helix-turn-helix domain-containing protein n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI00141D85C7)

HSP 1 Score: 118 bits (296), Expect = 9.480e-33
Identity = 68/79 (86.08%), Postives = 71/79 (89.87%), Query Frame = 1
Query:    1 MPAIALTREVGLLVRALRKRRGLTQAALAERIDRSEVALRAIERGASAPSFVTLERLAIALRVPASALFPASRLRDGTR 237
            MP IAL REVGLLVRALRKR GLTQA LAERI RSE A+RAIERGASAPSFVTLERLAIAL+VPASALFP SRL+D TR
Sbjct:    1 MPTIALAREVGLLVRALRKRYGLTQADLAERIGRSEAAVRAIERGASAPSFVTLERLAIALQVPASALFPTSRLKDRTR 79          
BLAST of mRNA_Ecto-sp13_S_contig69657.17976.1 vs. uniprot
Match: UPI0004066131 (helix-turn-helix domain-containing protein n=2 Tax=Cucumibacter marinus TaxID=1121252 RepID=UPI0004066131)

HSP 1 Score: 57.8 bits (138), Expect = 5.220e-9
Identity = 33/64 (51.56%), Postives = 47/64 (73.44%), Query Frame = 1
Query:   16 LTREVGLLVRALRKRRGLTQAALAERIDRSEVALRAIERGASAPSFVTLERLAIALRVPASALF 207
            L ++VG+ ++A+R+ + L+QA LAERIDR+  A+ AIERG S P + TLER+A AL VP +  F
Sbjct:    3 LRKQVGIRLKAIRQDKQLSQAELAERIDRTVDAVSAIERGKSLPGYETLERMATALGVPVTEFF 66          
BLAST of mRNA_Ecto-sp13_S_contig69657.17976.1 vs. uniprot
Match: A0A2A5BV03_9PROT (Transcriptional regulator n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2A5BV03_9PROT)

HSP 1 Score: 56.6 bits (135), Expect = 1.610e-8
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 1
Query:   16 LTREVGLLVRALRKRRGLTQAALAERIDRSEVALRAIERGASAPSFVTLERLAIALRVP 192
            +T+ +GL +RALRK++GL+QA LAE IDRS  A+  +ERG S PS  TL RL   L +P
Sbjct:    3 ITKNIGLKIRALRKQKGLSQAKLAEMIDRSTEAISNLERGISLPSIETLVRLGQQLDIP 61          
BLAST of mRNA_Ecto-sp13_S_contig69657.17976.1 vs. uniprot
Match: A0A2G2GGJ9_9PROT (HTH cro/C1-type domain-containing protein n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2GGJ9_9PROT)

HSP 1 Score: 56.6 bits (135), Expect = 1.840e-8
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query:   28 VGLLVRALRKRRGLTQAALAERIDRSEVALRAIERGASAPSFVTLERLAIALRVPASALF 207
            +G  V+A+RK++GLTQA LAE IDRSE AL  IERG + P   T+ER++I L VP    F
Sbjct:   12 IGRRVKAIRKQKGLTQAQLAELIDRSEDALSQIERGLNFPHVSTIERISIKLGVPLETFF 71          
BLAST of mRNA_Ecto-sp13_S_contig69657.17976.1 vs. uniprot
Match: UPI001AFD9BD4 (Helix-turn-helix transcriptional regulator n=1 Tax=Caulobacter sp. TaxID=78 RepID=UPI001AFD9BD4)

HSP 1 Score: 53.5 bits (127), Expect = 2.570e-7
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 1
Query:   16 LTREVGLLVRALRKRRGLTQAALAERIDRSEVALRAIERGASAPSFVTLERLAIALRVPASALF 207
            L  + G ++R  RKR GL+QA LAE+IDR   A++ +E G +AP+F TLERLA AL V    LF
Sbjct:    4 LEEQFGEMLRYHRKRAGLSQAQLAEKIDRQPNAVQRLESGEAAPTFDTLERLATALNVDVRELF 67          
BLAST of mRNA_Ecto-sp13_S_contig69657.17976.1 vs. uniprot
Match: UPI001C8931E0 (helix-turn-helix domain-containing protein n=1 Tax=Qipengyuania mesophila TaxID=2867246 RepID=UPI001C8931E0)

HSP 1 Score: 52.8 bits (125), Expect = 5.020e-7
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 1
Query:   25 EVGLLVRALRKRRGLTQAALAERIDRSEVALRAIERGASAPSFVTLERLAIALRVPASALF 207
            + G LV A R+RRGLTQAALAE  D SE  +  +E G +  SF T+E++A AL V A+ALF
Sbjct:    7 QFGNLVAAHRRRRGLTQAALAESCDLSEDMIARVEAGGTGASFKTIEKIADALGVSAAALF 67          
BLAST of mRNA_Ecto-sp13_S_contig69657.17976.1 vs. uniprot
Match: UPI001CDA3D6E (helix-turn-helix domain-containing protein n=1 Tax=Agrobacterium tomkonis TaxID=1183410 RepID=UPI001CDA3D6E)

HSP 1 Score: 52.0 bits (123), Expect = 9.800e-7
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 1
Query:   31 GLLVRALRKRRGLTQAALAERIDRSEVALRAIERGASAPSFVTLERLAIALRVPASALF 207
            G  VR  RK RGLTQ ALAER++ S   +  IERG++AP+F T ERLA AL +  + LF
Sbjct:    8 GANVRNHRKARGLTQEALAERVEVSMETIGKIERGSTAPTFATAERLASALDIQVTVLF 66          
BLAST of mRNA_Ecto-sp13_S_contig69657.17976.1 vs. uniprot
Match: A0A2G2GI76_9PROT (Transcriptional regulator n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2GI76_9PROT)

HSP 1 Score: 51.6 bits (122), Expect = 1.500e-6
Identity = 32/65 (49.23%), Postives = 38/65 (58.46%), Query Frame = 1
Query:   40 VRALRKRRGLTQAALAERIDRSEVALRAIERGASAPSFVTLERLAIALRVPASALFPASRLRDGT 234
            VR  R+  GLTQ ALA +I+R+  A+  IER  SAPS  TL  LA AL +P    FP     DGT
Sbjct:   13 VRHFRRSAGLTQEALATKIERTAEAISNIERARSAPSLETLIALAAALDIPMRDFFPTGSFEDGT 77          
BLAST of mRNA_Ecto-sp13_S_contig69657.17976.1 vs. uniprot
Match: B3PHX4_CELJU (Adenine-specific DNA methyltransferase n=2 Tax=Cellvibrio japonicus TaxID=155077 RepID=B3PHX4_CELJU)

HSP 1 Score: 50.1 bits (118), Expect = 2.400e-6
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 1
Query:   16 LTREVGLLVRALRKRRGLTQAALAERIDRSEVALRAIERGASAPSFVTLERLAIALRVPASALF 207
            L ++ G  V+ LR  R +TQ  LAER+  +  ++  IERG   PSF TLE+LAIALRVP  +LF
Sbjct:    3 LKKQFGKRVQQLRFARKMTQEQLAERVGITIESISNIERGIYGPSFDTLEKLAIALRVPVQSLF 66          
BLAST of mRNA_Ecto-sp13_S_contig69657.17976.1 vs. uniprot
Match: UPI001EDF08B2 (helix-turn-helix transcriptional regulator n=1 Tax=Methylobacterium frigidaeris TaxID=2038277 RepID=UPI001EDF08B2)

HSP 1 Score: 50.4 bits (119), Expect = 3.980e-6
Identity = 34/74 (45.95%), Postives = 41/74 (55.41%), Query Frame = 1
Query:   16 LTREVGLLVRALRKRRGLTQAALAERIDRSEVALRAIERGASAPSFVTLERLAIALRVPASALFPASRLRDGTR 237
            L +  GLLV A R+RRGLTQ ALAE+ D S   +  IE G +   F  +ERLA AL V  +  F      DG R
Sbjct:    4 LRKRFGLLVAAHRRRRGLTQEALAEKADLSVDMISRIEVGGTGARFPVIERLAAALEVDPAEFFTTQSHTDGMR 77          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69657.17976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
UPI00141D85C79.480e-3386.08helix-turn-helix domain-containing protein n=1 Tax... [more]
UPI00040661315.220e-951.56helix-turn-helix domain-containing protein n=2 Tax... [more]
A0A2A5BV03_9PROT1.610e-854.24Transcriptional regulator n=1 Tax=Alphaproteobacte... [more]
A0A2G2GGJ9_9PROT1.840e-855.00HTH cro/C1-type domain-containing protein n=1 Tax=... [more]
UPI001AFD9BD42.570e-751.56Helix-turn-helix transcriptional regulator n=1 Tax... [more]
UPI001C8931E05.020e-754.10helix-turn-helix domain-containing protein n=1 Tax... [more]
UPI001CDA3D6E9.800e-754.24helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A2G2GI76_9PROT1.500e-649.23Transcriptional regulator n=1 Tax=Robiginitomaculu... [more]
B3PHX4_CELJU2.400e-650.00Adenine-specific DNA methyltransferase n=2 Tax=Cel... [more]
UPI001EDF08B23.980e-645.95helix-turn-helix transcriptional regulator n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69657contigEcto-sp13_S_contig69657:17..253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size237
Hectar predicted targeting categoryother localisation
Exons1
Cds size237
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463956.2435443-CDS-Ecto-sp13_S_contig69657:16..2531681463956.2435443-CDS-Ecto-sp13_S_contig69657:16..253Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69657 17..253 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69657.17976.1prot_Ecto-sp13_S_contig69657.17976.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69657 17..253 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69657.17976.1

>prot_Ecto-sp13_S_contig69657.17976.1 ID=prot_Ecto-sp13_S_contig69657.17976.1|Name=mRNA_Ecto-sp13_S_contig69657.17976.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
MPAIALTREVGLLVRALRKRRGLTQAALAERIDRSEVALRAIERGASAPS
FVTLERLAIALRVPASALFPASRLRDGTR
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mRNA from alignment at Ecto-sp13_S_contig69657:17..253-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69657.17976.1 ID=mRNA_Ecto-sp13_S_contig69657.17976.1|Name=mRNA_Ecto-sp13_S_contig69657.17976.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69657:17..253- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTGCCATCGCCCTCACCCGCGAGGTCGGTCTTCTGGTCCGCGCCCT ACGCAAGCGGCGCGGCCTGACCCAGGCAGCCCTGGCCGAACGCATAGACC GTTCCGAGGTCGCGCTCCGCGCCATCGAGCGCGGCGCTTCCGCGCCCAGC TTCGTCACCCTGGAGCGCCTCGCCATCGCGCTGCGGGTGCCGGCATCCGC GCTCTTCCCCGCTTCACGCCTCAGGGACGGCACGCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69657:17..253-

>mRNA_Ecto-sp13_S_contig69657.17976.1 ID=mRNA_Ecto-sp13_S_contig69657.17976.1|Name=mRNA_Ecto-sp13_S_contig69657.17976.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69657:17..253- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTGCCATCGCCCTCACCCGCGAGGTCGGTCTTCTGGTCCGCGCCCT
ACGCAAGCGGCGCGGCCTGACCCAGGCAGCCCTGGCCGAACGCATAGACC
GTTCCGAGGTCGCGCTCCGCGCCATCGAGCGCGGCGCTTCCGCGCCCAGC
TTCGTCACCCTGGAGCGCCTCGCCATCGCGCTGCGGGTGCCGGCATCCGC
GCTCTTCCCCGCTTCACGCCTCAGGGACGGCACGCGC
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