mRNA_Ecto-sp13_S_contig69657.17976.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig69657.17976.1 vs. uniprot
Match: UPI00141D85C7 (helix-turn-helix domain-containing protein n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI00141D85C7) HSP 1 Score: 118 bits (296), Expect = 9.480e-33 Identity = 68/79 (86.08%), Postives = 71/79 (89.87%), Query Frame = 1
Query: 1 MPAIALTREVGLLVRALRKRRGLTQAALAERIDRSEVALRAIERGASAPSFVTLERLAIALRVPASALFPASRLRDGTR 237
MP IAL REVGLLVRALRKR GLTQA LAERI RSE A+RAIERGASAPSFVTLERLAIAL+VPASALFP SRL+D TR
Sbjct: 1 MPTIALAREVGLLVRALRKRYGLTQADLAERIGRSEAAVRAIERGASAPSFVTLERLAIALQVPASALFPTSRLKDRTR 79
BLAST of mRNA_Ecto-sp13_S_contig69657.17976.1 vs. uniprot
Match: UPI0004066131 (helix-turn-helix domain-containing protein n=2 Tax=Cucumibacter marinus TaxID=1121252 RepID=UPI0004066131) HSP 1 Score: 57.8 bits (138), Expect = 5.220e-9 Identity = 33/64 (51.56%), Postives = 47/64 (73.44%), Query Frame = 1
Query: 16 LTREVGLLVRALRKRRGLTQAALAERIDRSEVALRAIERGASAPSFVTLERLAIALRVPASALF 207
L ++VG+ ++A+R+ + L+QA LAERIDR+ A+ AIERG S P + TLER+A AL VP + F
Sbjct: 3 LRKQVGIRLKAIRQDKQLSQAELAERIDRTVDAVSAIERGKSLPGYETLERMATALGVPVTEFF 66
BLAST of mRNA_Ecto-sp13_S_contig69657.17976.1 vs. uniprot
Match: A0A2A5BV03_9PROT (Transcriptional regulator n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2A5BV03_9PROT) HSP 1 Score: 56.6 bits (135), Expect = 1.610e-8 Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 1
Query: 16 LTREVGLLVRALRKRRGLTQAALAERIDRSEVALRAIERGASAPSFVTLERLAIALRVP 192
+T+ +GL +RALRK++GL+QA LAE IDRS A+ +ERG S PS TL RL L +P
Sbjct: 3 ITKNIGLKIRALRKQKGLSQAKLAEMIDRSTEAISNLERGISLPSIETLVRLGQQLDIP 61
BLAST of mRNA_Ecto-sp13_S_contig69657.17976.1 vs. uniprot
Match: A0A2G2GGJ9_9PROT (HTH cro/C1-type domain-containing protein n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2GGJ9_9PROT) HSP 1 Score: 56.6 bits (135), Expect = 1.840e-8 Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query: 28 VGLLVRALRKRRGLTQAALAERIDRSEVALRAIERGASAPSFVTLERLAIALRVPASALF 207
+G V+A+RK++GLTQA LAE IDRSE AL IERG + P T+ER++I L VP F
Sbjct: 12 IGRRVKAIRKQKGLTQAQLAELIDRSEDALSQIERGLNFPHVSTIERISIKLGVPLETFF 71
BLAST of mRNA_Ecto-sp13_S_contig69657.17976.1 vs. uniprot
Match: UPI001AFD9BD4 (Helix-turn-helix transcriptional regulator n=1 Tax=Caulobacter sp. TaxID=78 RepID=UPI001AFD9BD4) HSP 1 Score: 53.5 bits (127), Expect = 2.570e-7 Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 1
Query: 16 LTREVGLLVRALRKRRGLTQAALAERIDRSEVALRAIERGASAPSFVTLERLAIALRVPASALF 207
L + G ++R RKR GL+QA LAE+IDR A++ +E G +AP+F TLERLA AL V LF
Sbjct: 4 LEEQFGEMLRYHRKRAGLSQAQLAEKIDRQPNAVQRLESGEAAPTFDTLERLATALNVDVRELF 67
BLAST of mRNA_Ecto-sp13_S_contig69657.17976.1 vs. uniprot
Match: UPI001C8931E0 (helix-turn-helix domain-containing protein n=1 Tax=Qipengyuania mesophila TaxID=2867246 RepID=UPI001C8931E0) HSP 1 Score: 52.8 bits (125), Expect = 5.020e-7 Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 1
Query: 25 EVGLLVRALRKRRGLTQAALAERIDRSEVALRAIERGASAPSFVTLERLAIALRVPASALF 207
+ G LV A R+RRGLTQAALAE D SE + +E G + SF T+E++A AL V A+ALF
Sbjct: 7 QFGNLVAAHRRRRGLTQAALAESCDLSEDMIARVEAGGTGASFKTIEKIADALGVSAAALF 67
BLAST of mRNA_Ecto-sp13_S_contig69657.17976.1 vs. uniprot
Match: UPI001CDA3D6E (helix-turn-helix domain-containing protein n=1 Tax=Agrobacterium tomkonis TaxID=1183410 RepID=UPI001CDA3D6E) HSP 1 Score: 52.0 bits (123), Expect = 9.800e-7 Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 1
Query: 31 GLLVRALRKRRGLTQAALAERIDRSEVALRAIERGASAPSFVTLERLAIALRVPASALF 207
G VR RK RGLTQ ALAER++ S + IERG++AP+F T ERLA AL + + LF
Sbjct: 8 GANVRNHRKARGLTQEALAERVEVSMETIGKIERGSTAPTFATAERLASALDIQVTVLF 66
BLAST of mRNA_Ecto-sp13_S_contig69657.17976.1 vs. uniprot
Match: A0A2G2GI76_9PROT (Transcriptional regulator n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2GI76_9PROT) HSP 1 Score: 51.6 bits (122), Expect = 1.500e-6 Identity = 32/65 (49.23%), Postives = 38/65 (58.46%), Query Frame = 1
Query: 40 VRALRKRRGLTQAALAERIDRSEVALRAIERGASAPSFVTLERLAIALRVPASALFPASRLRDGT 234
VR R+ GLTQ ALA +I+R+ A+ IER SAPS TL LA AL +P FP DGT
Sbjct: 13 VRHFRRSAGLTQEALATKIERTAEAISNIERARSAPSLETLIALAAALDIPMRDFFPTGSFEDGT 77
BLAST of mRNA_Ecto-sp13_S_contig69657.17976.1 vs. uniprot
Match: B3PHX4_CELJU (Adenine-specific DNA methyltransferase n=2 Tax=Cellvibrio japonicus TaxID=155077 RepID=B3PHX4_CELJU) HSP 1 Score: 50.1 bits (118), Expect = 2.400e-6 Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 1
Query: 16 LTREVGLLVRALRKRRGLTQAALAERIDRSEVALRAIERGASAPSFVTLERLAIALRVPASALF 207
L ++ G V+ LR R +TQ LAER+ + ++ IERG PSF TLE+LAIALRVP +LF
Sbjct: 3 LKKQFGKRVQQLRFARKMTQEQLAERVGITIESISNIERGIYGPSFDTLEKLAIALRVPVQSLF 66
BLAST of mRNA_Ecto-sp13_S_contig69657.17976.1 vs. uniprot
Match: UPI001EDF08B2 (helix-turn-helix transcriptional regulator n=1 Tax=Methylobacterium frigidaeris TaxID=2038277 RepID=UPI001EDF08B2) HSP 1 Score: 50.4 bits (119), Expect = 3.980e-6 Identity = 34/74 (45.95%), Postives = 41/74 (55.41%), Query Frame = 1
Query: 16 LTREVGLLVRALRKRRGLTQAALAERIDRSEVALRAIERGASAPSFVTLERLAIALRVPASALFPASRLRDGTR 237
L + GLLV A R+RRGLTQ ALAE+ D S + IE G + F +ERLA AL V + F DG R
Sbjct: 4 LRKRFGLLVAAHRRRRGLTQEALAEKADLSVDMISRIEVGGTGARFPVIERLAAALEVDPAEFFTTQSHTDGMR 77 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69657.17976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig69657.17976.1 >prot_Ecto-sp13_S_contig69657.17976.1 ID=prot_Ecto-sp13_S_contig69657.17976.1|Name=mRNA_Ecto-sp13_S_contig69657.17976.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp MPAIALTREVGLLVRALRKRRGLTQAALAERIDRSEVALRAIERGASAPSback to top mRNA from alignment at Ecto-sp13_S_contig69657:17..253- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig69657.17976.1 ID=mRNA_Ecto-sp13_S_contig69657.17976.1|Name=mRNA_Ecto-sp13_S_contig69657.17976.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69657:17..253- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69657:17..253- >mRNA_Ecto-sp13_S_contig69657.17976.1 ID=mRNA_Ecto-sp13_S_contig69657.17976.1|Name=mRNA_Ecto-sp13_S_contig69657.17976.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69657:17..253- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |