mRNA_Ecto-sp13_S_contig10151.180.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10151.180.1
Unique NamemRNA_Ecto-sp13_S_contig10151.180.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10151.180.1 vs. uniprot
Match: A0A6H5K5R8_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R8_9PHAE)

HSP 1 Score: 358 bits (919), Expect = 3.800e-122
Identity = 190/285 (66.67%), Postives = 201/285 (70.53%), Query Frame = 1 
Query:    1 MFSTTPYVIRAVRLVVAYNRKYRLKYARFVKRNYALGFWAVACMGLTIRAGMFFGTDPAHYSSDMRECFYWDDIILAGAVLLFGAAPMSCLAIRISRVNDAFKIREELCCVFIGCSCCVAVLWVIQVLVELEIWPNTSAFHVVVEVQALLVGMNSGISGLLLPM----------------------------------------------------------------------------IARNPEDEQFNCFLHILNHYLLPTSPDEINVSSAMHKRIAPFRTR 627
            MF+TTPYVIRAVRLVVAYNRKYRLKYARFVKRNYALGFWAV C+GLTIRAG+FFGTDPAHYSSDMRECFYWDDI+L GAVLLFG APMSCLAIRISRV+DAFK+REELC VFIGCSCCVAVLWVIQVLVELE+  +TSA HVVVEVQALL+GMN G+SGLLLPM                                                                            IARNPEDEQFNCFLHILNHYLLPTSPDEIN+SSAMHKRIAPFRTR
Sbjct:    1 MFATTPYVIRAVRLVVAYNRKYRLKYARFVKRNYALGFWAVGCIGLTIRAGIFFGTDPAHYSSDMRECFYWDDIMLMGAVLLFGGAPMSCLAIRISRVHDAFKLREELCFVFIGCSCCVAVLWVIQVLVELELLSDTSALHVVVEVQALLIGMNIGLSGLLLPMVRAHRGGVKAWFRATVVPVDETVAVSALDVDGVVGLASSGGEMAEQFGKFCRENLCMESWDFLVDVVRYERMAPSPIARNPEDEQFNCFLHILNHYLLPTSPDEINISSAMHKRIAPFRTR 285
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BLAST of mRNA_Ecto-sp13_S_contig10151.180.1 vs. uniprot
Match: D8LQY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY9_ECTSI)

HSP 1 Score: 296 bits (758), Expect = 8.540e-100
Identity = 147/202 (72.77%), Postives = 171/202 (84.65%), Query Frame = 1 
Query:   22 VIRAVRLVVAYNRKYRLKYARFVKRNYALGFWAVACMGLTIRAGMFFGTDPAHYSSDMRECFYWDDIILAGAVLLFGAAPMSCLAIRISRVNDAFKIREELCCVFIGCSCCVAVLWVIQVLVELEIWPNTSAFHVVVEVQALLVGMNSGISGLLLPMIARNPEDEQFNCFLHILNHYLLPTSPDEINVSSAMHKRIAPFRTR 627
            +IRA+RLV+AYNRKYRLKYA+FVKR  ALGFWAV  +GLT+RAG+FFGTDPAHYSSDMRECFYWDDI + G  L+FG AP+S L IRISRVNDAF++REELC   +GCS    +LWVIQVLVELE+WP+T A HVVVEV  LL+GMN+G  GLLLPM++ +PE EQFN FL+ILN YLLPTSPDEIN+SSAM K +A FRTR
Sbjct:    1 MIRAIRLVIAYNRKYRLKYAKFVKRKRALGFWAVISIGLTVRAGLFFGTDPAHYSSDMRECFYWDDIFVVGIGLIFGGAPVSLLVIRISRVNDAFQLREELCRTIMGCSGIAVILWVIQVLVELEVWPDTPALHVVVEVLILLLGMNAGYWGLLLPMMS-SPE-EQFNSFLYILNQYLLPTSPDEINISSAMSKHMATFRTR 200
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BLAST of mRNA_Ecto-sp13_S_contig10151.180.1 vs. uniprot
Match: A0A6H5KE83_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE83_9PHAE)

HSP 1 Score: 266 bits (679), Expect = 6.880e-84
Identity = 178/443 (40.18%), Postives = 191/443 (43.12%), Query Frame = 1 
Query:    1 MFSTTPYVIRAVRLVVAYNRKYRLKYARFVKRNYALGFWAVACMGLTIRAGMFFGTDPAHYS------------------------------------------------------------------------------------------------------------------------------SDMRECFYWDDIILAGAVLLFGAAPMSCLAIRISRVNDAFKIREELCCVFIGCSCCVAVLWVIQVLVELEIWPNTSAFHVVVEVQALLVGMNSGISGLLLPMIA------------------------------------------------------------------------------------------------------------RNPEDEQFNCFLHILNHYLLPTSPDEINVSSAMHKRIAPFRTR 627
            MF+TTPYVIRAVRLVVAYNRK RLKYARFVKRN+ALGF AVAC+GLTIRAG+FFGTDPAHYS                                                                                                                              SDMRECFYWDDIIL G ++L    PMSCLAIRISRVNDAFKIREELC VFIGCSCC AVLWVIQVLVEL++  +TSA HVVV+VQALL+GMN GISGLLLPM+                                                                                                              NPEDEQ  CFLHILNHYLLPTSPDEIN+SSAMHKRIAPFRTR
Sbjct:    1 MFATTPYVIRAVRLVVAYNRKCRLKYARFVKRNHALGFGAVACIGLTIRAGIFFGTDPAHYSRGQPNTQLEACQSGPLLQRRTRLQNTCRRRSHASIGVSDMRECFYWDVIILVGAILLLRGPPMSCLAIRISRAAGEGWQPLLLPPREKEKTKRRTRSNNCKPSCWRCTFPLISFISRLNCSYSLLCSDMRECFYWDDIILVGVMILSSGPPMSCLAIRISRVNDAFKIREELCFVFIGCSCCAAVLWVIQVLVELDLLSDTSALHVVVQVQALLIGMNIGISGLLLPMVRTHRGGVKAWFRATVVPVDETVAVSALDVDGVVGLASSVGEMAEQFGKFCRENLCMESWDLLVDVVRYERMVPSPSNIFCRVGFDTRWSCLWNFSHPNGLTWFVRFADRENPEDEQLKCFLHILNHYLLPTSPDEINISSAMHKRIAPFRTR 443
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BLAST of mRNA_Ecto-sp13_S_contig10151.180.1 vs. uniprot
Match: D8LQX1_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQX1_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 6.710e-31
Identity = 85/205 (41.46%), Postives = 109/205 (53.17%), Query Frame = 1 
Query:   16 PYVIRAVRLVVAYNRKYRLKYARFVKRNYALGFWAVACMGLTIRAGMFFGTDPAHYSSDMRECFYWDDIILAGAVLLFGAAPMSCLAIRISRVNDAFKIREELCCVFIGCSCCVAVLWVIQVLVEL-EIWPNTSAFHVVVEVQALLVGMNSGISGLLLPMIARNPEDEQFNCFLHILNHYLLPTSPDEINVSSAMHKRIAPFRTR 627
            PY IRAVRLV+AYNRKYRLKYA+FVKR +A G   +  + LTIRAG+FFG DPAHYSS           +L                  +  V + F ++    C          VL +     EL + +      ++ +E    LV +      +   ++A +PEDEQFN FL ILN YLLPTSPDEIN+SS+M  RI  F TR
Sbjct:    2 PYFIRAVRLVIAYNRKYRLKYAKFVKRKHATGVLVLTFIVLTIRAGLFFGDDPAHYSS-----------LLLPMARAHRGGVQEWFRATVVPVEEVFTVQASDEC---------GVLRLASGGGELAQQFGKFCQENLCMESWDFLVDVVR-YERIAPSLVANDPEDEQFNSFLFILNQYLLPTSPDEINISSSMSTRILAFGTR 185
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BLAST of mRNA_Ecto-sp13_S_contig10151.180.1 vs. uniprot
Match: D8LQW8_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQW8_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 3.750e-11
Identity = 33/46 (71.74%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:  490 MIARNPEDEQFNCFLHILNHYLLPTSPDEINVSSAMHKRIAPFRTR 627
            +IA +PEDEQFN FL ILN YLLPTSPDEIN+SS+M  RI  F TR
Sbjct:   77 LIANDPEDEQFNSFLFILNQYLLPTSPDEINISSSMSTRILAFGTR 122
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BLAST of mRNA_Ecto-sp13_S_contig10151.180.1 vs. uniprot
Match: A0A6H5L0L8_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L8_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.890e-6
Identity = 26/39 (66.67%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:  511 DEQFNCFLHILNHYLLPTSPDEINVSSAMHKRIAPFRTR 627
            D+QF+ FL +LN YLLPTSPDE+N+SS M KR+A F+TR
Sbjct:  326 DDQFDEFLILLNQYLLPTSPDEVNISSKMSKRMASFKTR 364
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BLAST of mRNA_Ecto-sp13_S_contig10151.180.1 vs. uniprot
Match: D7FYH4_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYH4_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 5.360e-6
Identity = 26/53 (49.06%), Postives = 32/53 (60.38%), Query Frame = 1 
Query:  469 ISGLLLPMIARNPEDEQFNCFLHILNHYLLPTSPDEINVSSAMHKRIAPFRTR 627
            +   L  M+     DEQF  F  I + YLL TSPDE+N+SSA  K +A FRTR
Sbjct:   38 VDATLYEMMDATDADEQFMTFTMISDRYLLATSPDEVNISSATSKHVAAFRTR 90
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10151.180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5K5R8_9PHAE3.800e-12266.67RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQY9_ECTSI8.540e-10072.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KE83_9PHAE6.880e-8440.18RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQX1_ECTSI6.710e-3141.46RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQW8_ECTSI3.750e-1171.74RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L0L8_9PHAE1.890e-666.67RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FYH4_ECTSI5.360e-649.06RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10151contigEcto-sp13_S_contig10151:3148..5618 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size627
Hectar predicted targeting categoryother localisation
Exons5
Cds size627
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462511.1733708-CDS-Ecto-sp13_S_contig10151:3147..32821681462511.1733708-CDS-Ecto-sp13_S_contig10151:3147..3282Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10151 3148..3282 -
1681462511.185842-CDS-Ecto-sp13_S_contig10151:3854..38701681462511.185842-CDS-Ecto-sp13_S_contig10151:3854..3870Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10151 3855..3870 -
1681462511.1941028-CDS-Ecto-sp13_S_contig10151:4202..43201681462511.1941028-CDS-Ecto-sp13_S_contig10151:4202..4320Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10151 4203..4320 -
1681462511.2020988-CDS-Ecto-sp13_S_contig10151:4741..49111681462511.2020988-CDS-Ecto-sp13_S_contig10151:4741..4911Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10151 4742..4911 -
1681462511.2102592-CDS-Ecto-sp13_S_contig10151:5430..56181681462511.2102592-CDS-Ecto-sp13_S_contig10151:5430..5618Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10151 5431..5618 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10151.180.1prot_Ecto-sp13_S_contig10151.180.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10151 3148..5618 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10151.180.1

>prot_Ecto-sp13_S_contig10151.180.1 ID=prot_Ecto-sp13_S_contig10151.180.1|Name=mRNA_Ecto-sp13_S_contig10151.180.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=209bp
MFSTTPYVIRAVRLVVAYNRKYRLKYARFVKRNYALGFWAVACMGLTIRA
GMFFGTDPAHYSSDMRECFYWDDIILAGAVLLFGAAPMSCLAIRISRVND
AFKIREELCCVFIGCSCCVAVLWVIQVLVELEIWPNTSAFHVVVEVQALL
VGMNSGISGLLLPMIARNPEDEQFNCFLHILNHYLLPTSPDEINVSSAMH
KRIAPFRTR
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mRNA from alignment at Ecto-sp13_S_contig10151:3148..5618-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10151.180.1 ID=mRNA_Ecto-sp13_S_contig10151.180.1|Name=mRNA_Ecto-sp13_S_contig10151.180.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2471bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10151:3148..5618- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTTCCACGACCCCGTACGTGATTCGGGCCGTTCGATTGGTGGTCGC
GTACAATCGAAAATATCGGCTCAAGTACGCCAGATTCGTGAAGAGAAATT
ATGCTTTGGGCTTCTGGGCCGTGGCCTGCATGGGGCTCACAATCCGAGCC
GGGATGTTCTTCGGGACCGATCCCGCACACTACTCCAGGTGACAACCAAA
CACACAGCTTGAAGCCTGCCAGAGCGGACGGCTCTTGCAGGGCCGGATGC
TATTGCAGAATACGTGTAGGTTGTGGAATCGACAAACCGCTGAACATTGG
ATGTTTCCGACGTCGGTCCACAAACTATGTACATAAGGGTCAACGCTCAT
TCCAGGTTGAGAACCGAACGCTTGATGCTTCGAATTGTCGGTTCCATAGG
CAGGCGCAGGTCTCACGCAAGCATTGGAGTCACGTTTTCGAACGTTTAGA
TACGCCAGCAAGGTTGGGTAGCATCTCATTGCTACCGTAGTCTTGGAAGA
AGGTGCACTGTCAAGCGTTCGCCTCATCATCCACCTCTTTCGCCTCGACG
ACTATGCACCAATGCATCCCTCTTTCGATAATCGCGTGAGCACCGTCATG
GTAACGGAGATCTGTCAATCGAGCGCAAAATGAAATCGCGTGTTGGAGGT
ACACTTCTCCATCTCTCGAACCTCCCGGCTCAACTACCCTTATTCGCTGC
TCTGCAGTGACATGCGAGAGTGTTTCTACTGGGACGACATCATTCTCGCG
GGAGCAGTACTCCTTTTTGGCGCAGCGCCGATGTCGTGTTTGGCCATACG
TATATCGCGAGTAAACGACGCCTTTAAGATTCGCGAGGAACTGTGTTGTG
TGTTCATCGGCTGCTCCTGCTGCGTAGGTGAGGGAAAAAAAGCTATCTGA
ACGCTACACAAAGCTACGGTAGCCCTTCCATATTGCACTCTAGACCCTCT
CTCGGAAGGCTTCCCGGCACCAGTTAAGGGTAGGGTGAGCGTCCTGATGC
AGAGGGCAGAATGTATCAGACTAATAATGGTTTCCGTCTATGGCATGCGT
CCTGAGTTGCAAACTTAGGCCTTGTTTCATCGTTGGCATACGTGTCATGC
ACCATTATCACCCTCCCAGGGTGCACAGAGGAAGTTTGCGATCAAGTTGC
GACCATCCTCTGCTTGCCGTGCGTCACGCACGATGAGAGCCAAGATTCTG
GAATAATCAAATTCACCTACGCTTGAGTGACGATACATTGGACCCACCAA
TCAGCACGTGACGCTGTCCGTGGGTCGCTGTCTCTGCCTTTTACGCAGCT
GTACTGTGGGTGATCCAGGTGCTGGTGGAACTGGAAATATGGCCCAATAC
ATCCGCATTTCACGTGGTGGTCGAAGTGCAAGCGCTCCTGGTGGGGATGA
ACAGTGGAATTTCGGGGTGAGACACAGCTCATTGTCGCTGTCGGTAGTGT
CATACCTCGAACAGGTTGATTCGCCTCAGAATCAGGCACATTCGTTTAGC
CTCTGCGTCCGCGCCGACATAAATAGGGTTTGGCTTCCAAGTGGAACGTG
ATATAGGCCCGTGCCGCTATGTAGTCAGGCCTCCCCCCCTCTTGGCGAGG
ACGTACAACAGGGCGTGGATATGTCCGGGGAGACCTGTTTCTCTCACCTG
CCGCCTGCATGAAGCCACAATGAAAGCCAAGGTAGTGTTCCACCATTTGG
CCACCCGCGCGAATCTTGCTCCATATGTTGGCTGTTGCATCGACGCAGCT
TGCTCCTTCCCATGGTGAGAGCCCACCGTGGTGGGGTGCAAGCATGGTTC
ATGGCTACTGTGGTTCCTGTCGAAGAGACGGTCGCCGTGTCAGCGTTGGA
TGTGGATGGCGTGGTAGGGCTGGCAAGCAGTGGTGGAGAAATTGCTGAGC
AGTTTGGAAATTTCTGCCAAGAGAACTTGTGCATGGAGAGCTGGGATTTC
CTCGTGGACGTTGTCCGCTACGAACGCATGGCGCCAAGCCTCGTAAGTAC
ATGTACAACAGCCAAATACAGAACATGTCATTTGATGATGCTCCCTTGAT
ATACCCAGAGCCGCACAAAAAACCTTAGGTCGTCGCATGCGTACGCAAAG
GGCGACACGATACATCATGGATATCAGGTTGGTGTGGCTGATATAAGGCA
AGAATCGATAGATGATTCCACTCCGGGGAATTTGTTGTATATAGGGTCGA
GACCTGAAGACGTCGCCATCAGAGCATTTGTCTGCTGTCGGGCGGGATTT
GATACCCGCTGGTCGTGTTTGTGGGATTTTTCTCACCCCAACGGGCTCAC
CTCGTTTGCGCGCTACATCGTGAAAACATTGTGCAGATCGCGAGAAACCC
TGAGGACGAGCAGTTCAACTGCTTCTTGCACATCCTGAACCATTACCTGC
TTCCCACGTCACCCGACGAGATCAACGTATCCAGCGCAATGCACAAACGC
ATCGCGCCATTCAGAACAAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10151:3148..5618-

>mRNA_Ecto-sp13_S_contig10151.180.1 ID=mRNA_Ecto-sp13_S_contig10151.180.1|Name=mRNA_Ecto-sp13_S_contig10151.180.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=627bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10151:3148..5618- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTTCCACGACCCCGTACGTGATTCGGGCCGTTCGATTGGTGGTCGC
GTACAATCGAAAATATCGGCTCAAGTACGCCAGATTCGTGAAGAGAAATT
ATGCTTTGGGCTTCTGGGCCGTGGCCTGCATGGGGCTCACAATCCGAGCC
GGGATGTTCTTCGGGACCGATCCCGCACACTACTCCAGTGACATGCGAGA
GTGTTTCTACTGGGACGACATCATTCTCGCGGGAGCAGTACTCCTTTTTG
GCGCAGCGCCGATGTCGTGTTTGGCCATACGTATATCGCGAGTAAACGAC
GCCTTTAAGATTCGCGAGGAACTGTGTTGTGTGTTCATCGGCTGCTCCTG
CTGCGTAGCTGTACTGTGGGTGATCCAGGTGCTGGTGGAACTGGAAATAT
GGCCCAATACATCCGCATTTCACGTGGTGGTCGAAGTGCAAGCGCTCCTG
GTGGGGATGAACAGTGGAATTTCGGGCTTGCTCCTTCCCATGATCGCGAG
AAACCCTGAGGACGAGCAGTTCAACTGCTTCTTGCACATCCTGAACCATT
ACCTGCTTCCCACGTCACCCGACGAGATCAACGTATCCAGCGCAATGCAC
AAACGCATCGCGCCATTCAGAACAAGG
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