mRNA_Ecto-sp13_S_contig6946.17942.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6946.17942.1
Unique NamemRNA_Ecto-sp13_S_contig6946.17942.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6946.17942.1 vs. uniprot
Match: D8LF42_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF42_ECTSI)

HSP 1 Score: 300 bits (767), Expect = 9.440e-101
Identity = 154/157 (98.09%), Postives = 156/157 (99.36%), Query Frame = 1 
Query:    1 HSWFKHKILSYSVTLHVPSLLATEKAKCGRAVNALRACVRSRDDAHSRGAEAVLERKEATSTVERLEEELREMQAKLDGATRLAEQLGREVEDCQQREYLEGRKIQGLTFRLMPEEILIRTLSYGSEEDEWLTVCKDWLEALSPSSGGSIDDAGSHE 471
            HSWFKHKILSYSVTLHVPSLLATEKAKCGRAVNALRACVRSRDDAHSRGAEAVLERKEA STVERLEEELREMQAKLDGATRLAEQLGREV+DCQQREYLEGRKIQGLTFRLMPEEILIRTLSYGSEEDEWLTVCKDWLEALSPS+GGSIDDAGSHE
Sbjct:  132 HSWFKHKILSYSVTLHVPSLLATEKAKCGRAVNALRACVRSRDDAHSRGAEAVLERKEAASTVERLEEELREMQAKLDGATRLAEQLGREVDDCQQREYLEGRKIQGLTFRLMPEEILIRTLSYGSEEDEWLTVCKDWLEALSPSAGGSIDDAGSHE 288
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BLAST of mRNA_Ecto-sp13_S_contig6946.17942.1 vs. uniprot
Match: A0A7S2V237_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V237_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 8.150e-18
Identity = 63/154 (40.91%), Postives = 91/154 (59.09%), Query Frame = 1 
Query:    1 HSWFKHKILSYSVTLHVPSLLATEKAKCGRAVNALRACVRSRDDAHS-RGAEAVLE--RKEATSTV-------ERLEEELREMQAKLDGATRLAEQLGREVEDCQQREYLEGRKIQGLTFRLMPEEILIRTLSYGSEE-DEWLTVCKDWLEALS 429
            +SWFK K+LSYSV LHVPS+   E+AKC RA+ A  AC   +DD  + +  E V E  +K+A   V       ERL ++L ++ A L+G  RL   +G++     QR  L  R+++GLTFRL+P  +L R L++   + D+W  VC DW   +S
Sbjct:  204 YSWFKEKLLSYSVDLHVPSVRGIERAKCERALAAFDAC---QDDLRAAQHEERVCEERKKQAAQKVAATRRDIERLSQQLADLTATLEGEMRL---IGQQA----QRANLRKRQLRGLTFRLLPLALLGRILAFADPKTDQWAVVCSDWHAVIS 347
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6946.17942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LF42_ECTSI9.440e-10198.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2V237_9STRA8.150e-1840.91Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6946contigEcto-sp13_S_contig6946:89..1717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score303.9
Seed ortholog evalue4.3e-80
Seed eggNOG ortholog2880.D8LF42
Model size474
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2CSG1@1,2RBR0@2759
Ec32 ortholog descriptionGOLD
Ec32 orthologEc-06_001590.1
Cds size474
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463953.6629343-CDS-Ecto-sp13_S_contig6946:88..2801681463953.6629343-CDS-Ecto-sp13_S_contig6946:88..280Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6946 89..280 +
1681463953.6820457-CDS-Ecto-sp13_S_contig6946:770..8681681463953.6820457-CDS-Ecto-sp13_S_contig6946:770..868Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6946 771..868 +
1681463953.6934617-CDS-Ecto-sp13_S_contig6946:1533..17171681463953.6934617-CDS-Ecto-sp13_S_contig6946:1533..1717Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6946 1534..1717 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6946.17942.1prot_Ecto-sp13_S_contig6946.17942.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6946 89..1717 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6946.17942.1

>prot_Ecto-sp13_S_contig6946.17942.1 ID=prot_Ecto-sp13_S_contig6946.17942.1|Name=mRNA_Ecto-sp13_S_contig6946.17942.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=158bp
HSWFKHKILSYSVTLHVPSLLATEKAKCGRAVNALRACVRSRDDAHSRGA
EAVLERKEATSTVERLEEELREMQAKLDGATRLAEQLGREVEDCQQREYL
EGRKIQGLTFRLMPEEILIRTLSYGSEEDEWLTVCKDWLEALSPSSGGSI
DDAGSHE*
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mRNA from alignment at Ecto-sp13_S_contig6946:89..1717+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6946.17942.1 ID=mRNA_Ecto-sp13_S_contig6946.17942.1|Name=mRNA_Ecto-sp13_S_contig6946.17942.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1629bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6946:89..1717+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACTCATGGTTCAAGCACAAGATTTTGTCGTACTCGGTGACGCTGCACGT
GCCTAGCCTGCTTGCCACGGAAAAGGCCAAATGCGGCCGCGCGGTCAACG
CGCTCAGAGCATGCGTGCGTTCGAGGGATGATGCGCACTCCAGGGGGGCG
GAAGCGGTGCTTGAGAGGAAGGAGGCCACATCTACCGTTGAGGTGTGTGT
GTGGGTTTGCCGCTATGCACCAGTAGCTTTTGGTCTTGGCCTATCAAATT
CACGTAAGGAAGTCGGATTGGTCGGGCGAGGTGTTTTGCTGCTGCTTCAA
CTCAGGCGAAAGCCGTGTTTTGGTGCGGGTGGTTTGTTGTGAGCGAGCCG
AGCGTGTGAGCCACGATAGCTTTCACAGAGCAAGGCCTCGACCCCACCAC
CACGTCCTACGGTTCTACGCACCGCTGTCGAGCATCTGCGGTCCACGTGT
GATTCCGTGTGCGGGTAACCTTCCCCCCTTTGGCTTATCGTTTTCGGTCG
AAACGAGCCAATAAACATTTGTCACCTCCGTGCTGACCAGTAGGATCGGA
GAGAAACCGGAGCTCTCGTCGTCCTCATTTTTTTTTCTGTACCCATCTCG
CTGTCATATCCCCGTTCTTATTCCTTCTTGAACCGGATCGTGCAACGTGT
TGTTGTTCTTGTGTGGTGGCTACGTCTACTAGCGTCTAGAGGAAGAGCTT
CGAGAGATGCAGGCCAAGCTTGACGGGGCGACCAGACTAGCGGAGCAGCT
CGGGAGAGAGGTCGAGGATTGCCAACAAAGGTAGGTGACTCGACCGGCGG
GATACACAGCTATGTCTCTTCGCGTTGCGTGCTCTCACTGCTACTACCTT
GCGAAAGTTTGTGTCTGCGTTGTGGCTGACGGGGATCGGTTACAGTATCT
AGTTCTTTTACGATCCTTCTGGTTCCGCACGTCCTTCGAGCCATTTGGTC
ACTACTCCGTATTCAATACCCTCCACCGACGAGAGCAGTAGTGTATACTT
TGGAGAGTTTGAGTACAACGGGCAGTTTCTTCAATAATAGCAAACTTGGC
CCATGGTCGTAGCAGATGCTCCAGGTCGCGAAACCCGGCTTCTATAATAT
GACAGCACCCAGTCGTTTTTATCCTGATTGCTCCCGAGGAGAACGATAAC
GACGGCGGCCTCATTGGTGCATCAGTTTGTTTTGCAGCGAGTTGATCGCT
TAGTCCTGTCTGTGCCTGGCGTTGCAGTGACAGCACCGCTGCTAAGGTTT
TTGTAAAGATAGATGCGGCTGCTGTTGTGTATGCTTGAGCCGTCGGTGAG
CGATGTTCTATTTCCCGACGACTCTCTCCCTCTCCCTCCCTCCCTCCCCC
TTCTCTCTCTCTCTCTCTACCTCTCCCTCCCTACCTCCCTCCCTTCCTCT
CTCCCCCTCCCATCACCACTTCTCTCGCCTCCTTAACAATAACAGGGAAT
ACCTCGAAGGTCGCAAGATCCAAGGGTTAACCTTCCGGCTCATGCCGGAA
GAGATCCTGATCCGGACGCTGTCCTACGGGTCGGAAGAAGACGAGTGGTT
GACCGTCTGCAAGGATTGGCTCGAAGCCCTGTCCCCGAGCTCGGGCGGCT
CGATAGACGATGCAGGATCCCACGAATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6946:89..1717+

>mRNA_Ecto-sp13_S_contig6946.17942.1 ID=mRNA_Ecto-sp13_S_contig6946.17942.1|Name=mRNA_Ecto-sp13_S_contig6946.17942.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=474bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6946:89..1717+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACTCATGGTTCAAGCACAAGATTTTGTCGTACTCGGTGACGCTGCACGT
GCCTAGCCTGCTTGCCACGGAAAAGGCCAAATGCGGCCGCGCGGTCAACG
CGCTCAGAGCATGCGTGCGTTCGAGGGATGATGCGCACTCCAGGGGGGCG
GAAGCGGTGCTTGAGAGGAAGGAGGCCACATCTACCGTTGAGCGTCTAGA
GGAAGAGCTTCGAGAGATGCAGGCCAAGCTTGACGGGGCGACCAGACTAG
CGGAGCAGCTCGGGAGAGAGGTCGAGGATTGCCAACAAAGGGAATACCTC
GAAGGTCGCAAGATCCAAGGGTTAACCTTCCGGCTCATGCCGGAAGAGAT
CCTGATCCGGACGCTGTCCTACGGGTCGGAAGAAGACGAGTGGTTGACCG
TCTGCAAGGATTGGCTCGAAGCCCTGTCCCCGAGCTCGGGCGGCTCGATA
GACGATGCAGGATCCCACGAATGA
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