prot_Ecto-sp13_S_contig12105.1793.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12105.1793.1
Unique Nameprot_Ecto-sp13_S_contig12105.1793.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length184
Homology
BLAST of mRNA_Ecto-sp13_S_contig12105.1793.1 vs. uniprot
Match: D7FNY3_ECTSI (DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY3_ECTSI)

HSP 1 Score: 345 bits (884), Expect = 3.070e-113
Identity = 176/184 (95.65%), Postives = 179/184 (97.28%), Query Frame = 0
Query:    1 LPDPVLSTLSVNKDLGCVSEAFQKSLQAFLDSNPAPLRDDHTKEDLKALAATGTSSPLGPNSLKEAFELLMWVKYMRCLANPGETVGSIAAQSVGEPSTQMTLNTFHLAGHGGANVTLGIPRLREIIMTAAKNLKTPSMVVPLREGADRPAAKSLALRLSRLPLSQLLDNRGGIVVRERLVKGD 184
            LPDPVLSTLSVNKDLGCVSEAFQKSLQAFLDSNPA LR DHTKE+ KA+AA+GTSSP GP SLKEAFELLMWVKYMRCLANPGETVGSIAAQSVGEPSTQMTLNTFHLAGHGGANVTLGIPRLREIIMTAAKNLKTPSMVVPLREGADRPAAKSLALRLSRLPLSQLLDNRGGIVVRERLVKGD
Sbjct:   48 LPDPVLSTLSVNKDLGCVSEAFQKSLQAFLDSNPASLRGDHTKENSKAVAASGTSSPPGPGSLKEAFELLMWVKYMRCLANPGETVGSIAAQSVGEPSTQMTLNTFHLAGHGGANVTLGIPRLREIIMTAAKNLKTPSMVVPLREGADRPAAKSLALRLSRLPLSQLLDNRGGIVVRERLVKGD 231          
BLAST of mRNA_Ecto-sp13_S_contig12105.1793.1 vs. uniprot
Match: A0A6H5KJ16_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ16_9PHAE)

HSP 1 Score: 316 bits (809), Expect = 1.650e-96
Identity = 164/182 (90.11%), Postives = 167/182 (91.76%), Query Frame = 0
Query:    1 LPDPVLSTLSVNKDLGCVSEAFQKSLQAFLDSNPAPLRDDHTKEDLKALAATGTSSPLGPNSLKEAFELLMWVKYMRCLANPGETVGSIAAQSVGEPSTQMTLNTFHLAGHGGANVTLGIPRLREIIMTAAKNLKTPSMVVPLREGADRPAAKSLALRLSRLPLSQLLDNRGGIVVRERLVK 182
            LPDPVLSTL+VNKDLGCVSEAFQKSLQAFLDSNPA LR DHT +  KA AATG  S  G  SLKEAFELLMWVKYMRCLANPGETVGSIAAQSVGEPSTQMTLNTFHLAGHGGANVTLGIPRLREIIMTAAKNLKTPSMVVPLREGADR  A+SLA RLSRLPLSQLLDNRGGIVVRERLVK
Sbjct: 1277 LPDPVLSTLNVNKDLGCVSEAFQKSLQAFLDSNPASLRGDHTNDSSKAGAATGRLSSPGVRSLKEAFELLMWVKYMRCLANPGETVGSIAAQSVGEPSTQMTLNTFHLAGHGGANVTLGIPRLREIIMTAAKNLKTPSMVVPLREGADRSTARSLARRLSRLPLSQLLDNRGGIVVRERLVK 1458          
BLAST of mRNA_Ecto-sp13_S_contig12105.1793.1 vs. uniprot
Match: A0A7S3HIX0_9STRA (DNA-directed RNA polymerase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HIX0_9STRA)

HSP 1 Score: 189 bits (481), Expect = 2.190e-53
Identity = 102/180 (56.67%), Postives = 130/180 (72.22%), Query Frame = 0
Query:    1 LPDPVLSTLSVNKDLGCVSEAFQKSLQAFLDSNPAPLRDDHTKEDLKALAATGTSSPLGPNSLKEAFELLMWVKYMRCLANPGETVGSIAAQSVGEPSTQMTLNTFHLAGHGGANVTLGIPRLREIIMTAAKNLKTPSMVVPLREGADRPAAKSLALRLSRLPLSQLLDNRGGIVVRERL 180
            LP P +STL +++ +G VSEA Q+ ++ ++  NP  +  D            G  + +  +SL    ELL+WVKY+R +A PGE VG +AAQSVGEPSTQMTLNTFHLAGHGGANVTLGIPRLREIIMTA++NLKTP+M  P+    D  AAK+LA +LSRLPLSQLL ++GGIVV E++
Sbjct:   81 LPAPAMSTLRLDRSVGAVSEALQQKVRDYVKKNPDGVITD-----------VGADTTVTGDSL----ELLVWVKYLRSMACPGEAVGCVAAQSVGEPSTQMTLNTFHLAGHGGANVTLGIPRLREIIMTASRNLKTPTMYAPMCVPRDNIAAKALARKLSRLPLSQLLSHQGGIVVGEQI 245          
BLAST of mRNA_Ecto-sp13_S_contig12105.1793.1 vs. uniprot
Match: A0A836C8M0_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8M0_9STRA)

HSP 1 Score: 189 bits (481), Expect = 2.150e-52
Identity = 105/183 (57.38%), Postives = 128/183 (69.95%), Query Frame = 0
Query:    3 DPVLSTLSVNKDLGCVSEAFQKSLQAFLDSNPAPLRDDHTKEDLKALAATGTSSPLGPNSLKEAFELLMWVKYMRCLANPGETVGSIAAQSVGEPSTQMTLNTFHLAGHGGANVTLGIPRLREIIMTAAKNLKTPSMVVPLREGADRPAAKSLALRLSRLPLSQLLDNRGG-IVVRERLVKGD 184
            DPVLSTL+VN+DLG VSE F   L+AF+ +      + H +         G  S     + ++ F ++MWVKYMR LA PGE VG+IA QSVGEPSTQMTLNTFHLAGHGGANVTLGIPRLREI+MTA++ LKTP+  VPL  G  R   ++LA  L+RLPL +LL N GG + VRE+L KGD
Sbjct: 1108 DPVLSTLNVNQDLGAVSERFHARLEAFMAA------ESHRR---------GLLSGRRGAAARDDFTVMMWVKYMRSLAAPGEAVGAIAGQSVGEPSTQMTLNTFHLAGHGGANVTLGIPRLREIVMTASRALKTPAATVPLLRGVSRAQGEALARLLTRLPLLELLLNTGGGVTVREKLGKGD 1275          
BLAST of mRNA_Ecto-sp13_S_contig12105.1793.1 vs. uniprot
Match: A0A024TY59_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TY59_9STRA)

HSP 1 Score: 176 bits (446), Expect = 1.100e-47
Identity = 95/179 (53.07%), Postives = 121/179 (67.60%), Query Frame = 0
Query:    1 LPDPVLSTLSVNKDLGCVSEAFQKSLQAFLDSNPAPLRDDHTKEDLKALAATGTS-SPLGPNSLKEAFELLMWVKYMRCLANPGETVGSIAAQSVGEPSTQMTLNTFHLAGHGGANVTLGIPRLREIIMTAAKNLKTPSMVVPLREGADRPAAKSLALRLSRLPLSQLLDNRGGIVVRE 178
            LPDPV+  L +N  +G VSE  Q  ++A+   NPA L +    + L A A +    SPLG       F L++WVKYMR L  PGE VG+I AQS+GEPSTQMTLNTFHLAGHG ANVTLGIPRLREIIMTA++ + TP M VPL       AA+++  RL+++PL++LL N  GI V++
Sbjct: 1226 LPDPVMHQLPLNAHIGVVSEKTQLDIEAYAKGNPAGLLESKKTKALPAAAKSPMMLSPLG-------FRLMVWVKYMRSLCQPGENVGTICAQSIGEPSTQMTLNTFHLAGHGAANVTLGIPRLREIIMTASQKMSTPMMTVPLLPTTSAAAAQAVEQRLNQVPLAELLRNTKGIRVQD 1397          
BLAST of mRNA_Ecto-sp13_S_contig12105.1793.1 vs. uniprot
Match: A0A1V9ZTF5_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZTF5_9STRA)

HSP 1 Score: 174 bits (442), Expect = 3.780e-47
Identity = 88/184 (47.83%), Postives = 121/184 (65.76%), Query Frame = 0
Query:    1 LPDPVLSTLSVNKDLGCVSEAFQKSLQAFLDSNPAPLRDDHTKEDLKALAATGTSSPLGPNSLKEAFELLMWVKYMRCLANPGETVGSIAAQSVGEPSTQMTLNTFHLAGHGGANVTLGIPRLREIIMTAAKNLKTPSMVVPLREGADRPAAKSLALRLSRLPLSQLLDNRGGIVVRERLVKGD 184
            LPDPV+  L +N  +GC+SE  Q  ++A+  +NP+ L +    +             LG      AF L++WVKYMR L  PGE VG+I AQS+GEPSTQMTLNTFHLAGHG ANVTLGIPRLREIIMTA+K + TP M +PL   A   A  ++  +L+++PL++L+ N  GI V+++ ++ +
Sbjct: 1193 LPDPVMHALPLNSHIGCISEKSQGHIEAYSKANPSNLLESKKNK-------------LGGVVSASAFRLMVWVKYMRSLCQPGENVGTICAQSIGEPSTQMTLNTFHLAGHGAANVTLGIPRLREIIMTASKKMSTPMMTIPLMPSASAAAGMAVEQQLNQVPLAELIRNTKGIRVQDQFLEAE 1363          
BLAST of mRNA_Ecto-sp13_S_contig12105.1793.1 vs. uniprot
Match: K8YRY5_NANGC (DNA-directed RNA polymerase subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YRY5_NANGC)

HSP 1 Score: 174 bits (440), Expect = 7.040e-47
Identity = 96/183 (52.46%), Postives = 122/183 (66.67%), Query Frame = 0
Query:    1 LPDPVL--STLSVNKDLGCVSEAFQKSLQAFLDSNPAPLRDDHTKEDLKALAATGTSSPLGPNSLKEAFELLMWVKYMRCLANPGETVGSIAAQSVGEPSTQMTLNTFHLAGHGGANVTLGIPRLREIIMTAAKNLKTPSMVVPLREGADRPAAKSLALRLSRLPLSQLLDN-RGGIVVRERL 180
            LPDPVL  +   +   LG +SE FQ +++ +L  +P  L                  S +G +  K   ELL+W+KYMR L +PGE VGSIA QS+GEPSTQMTLNTFHLAGHGGANVTLGIPRLREIIMTA++N KTPSM VPL     R  A+ L+ RL RL L +++ + +GG++V+ERL
Sbjct: 1262 LPDPVLGRAKTQLGLHLGAISERFQDAIEDYLGRDPEHLFQ---------------KSEMGGSKSKAGLELLLWLKYMRSLTSPGEAVGSIAGQSIGEPSTQMTLNTFHLAGHGGANVTLGIPRLREIIMTASRNPKTPSMTVPLCTSISRSEAQRLSARLRRLQLLEVVHHTQGGVLVKERL 1429          
BLAST of mRNA_Ecto-sp13_S_contig12105.1793.1 vs. uniprot
Match: A0A482SXB0_9ARCH (DNA-directed RNA polymerase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SXB0_9ARCH)

HSP 1 Score: 172 bits (435), Expect = 3.210e-46
Identity = 94/176 (53.41%), Postives = 114/176 (64.77%), Query Frame = 0
Query:    7 STLSVNKDLGCVSEAFQKSLQAFLDSNPAPLRDDHTKEDLKALAATGTSSPLGPNSLKEAFELLMWVKYMRCLANPGETVGSIAAQSVGEPSTQMTLNTFHLAGHGGANVTLGIPRLREIIMTAAKNLKTPSMVVPLREGADRPAAKSLALRLSRLPLSQLLDNRGGIVVRERLVK 182
            S L +   +G VSE  Q S+  ++  NP  +                 S P       E+ ELL+W+KYMR LA PGE VG +AAQS+GEPSTQMTLNTFHLAGHGGANVTLGIPRLREIIMTA+K LKTP MVVPL       AA+SLA +LS LPL+ LL ++GG+ V E + +
Sbjct:  688 SKLKLGNTVGAVSEKIQDSIVDYVTKNPDKVIH---------------SEPSDSTVTAESLELLIWIKYMRSLACPGEAVGCVAAQSIGEPSTQMTLNTFHLAGHGGANVTLGIPRLREIIMTASKTLKTPMMVVPLAPNRTMEAARSLARKLSCLPLATLLHHQGGVEVGESMTR 848          
BLAST of mRNA_Ecto-sp13_S_contig12105.1793.1 vs. uniprot
Match: A0A1V9ZEK2_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZEK2_9STRA)

HSP 1 Score: 171 bits (433), Expect = 6.120e-46
Identity = 86/184 (46.74%), Postives = 121/184 (65.76%), Query Frame = 0
Query:    1 LPDPVLSTLSVNKDLGCVSEAFQKSLQAFLDSNPAPLRDDHTKEDLKALAATGTSSPLGPNSLKEAFELLMWVKYMRCLANPGETVGSIAAQSVGEPSTQMTLNTFHLAGHGGANVTLGIPRLREIIMTAAKNLKTPSMVVPLREGADRPAAKSLALRLSRLPLSQLLDNRGGIVVRERLVKGD 184
            LPDPV+  L +N  +GCVSE  Q+ ++ +  +NP+ L +    +             +G      AF L++WVKYMR L  PGE VG+I AQS+GEPSTQMTLNTFHLAGHG ANVTLGIPRLREIIMTA+K + TP M +P+   A    A ++  +L+++PL++L+ N  GI V+++ ++ +
Sbjct: 1195 LPDPVMHALQLNNHIGCVSEKTQQHIETYSKANPSNLLESKKNK-------------IGGVVSSSAFRLMVWVKYMRSLCQPGENVGTICAQSIGEPSTQMTLNTFHLAGHGAANVTLGIPRLREIIMTASKKMSTPMMTIPVLPTATPAQAVAVEQKLNQVPLAELIRNTKGIRVQDQFLESE 1365          
BLAST of mRNA_Ecto-sp13_S_contig12105.1793.1 vs. uniprot
Match: A0A418BIQ5_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418BIQ5_9STRA)

HSP 1 Score: 169 bits (429), Expect = 2.060e-45
Identity = 91/179 (50.84%), Postives = 119/179 (66.48%), Query Frame = 0
Query:    1 LPDPVLSTLSVNKDLGCVSEAFQKSLQAFLDSNPAPLRDDHTKEDLKALAATGTS-SPLGPNSLKEAFELLMWVKYMRCLANPGETVGSIAAQSVGEPSTQMTLNTFHLAGHGGANVTLGIPRLREIIMTAAKNLKTPSMVVPLREGADRPAAKSLALRLSRLPLSQLLDNRGGIVVRE 178
            +PDPV+  L +N  +G +SE  Q  ++++  +NPA L +    + L   A +    SPLG       F L++WVKYMR L  PGE VG+I AQS+GEPSTQMTLNTFHLAGHG ANVTLGIPRLREIIMTA++ + TP M VPL       AA+ +  RL+++PLS+L+ N  GI V +
Sbjct:  750 VPDPVMHQLPLNAHIGVISEKTQLEIESYAKTNPAGLLESKKTKALPVEAQSPMMLSPLG-------FRLMVWVKYMRSLCQPGENVGTICAQSIGEPSTQMTLNTFHLAGHGAANVTLGIPRLREIIMTASQKMSTPMMTVPLLATTSPAAAQQVEQRLNQVPLSELIRNVKGIRVTD 921          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12105.1793.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNY3_ECTSI3.070e-11395.65DNA-directed RNA polymerase n=1 Tax=Ectocarpus sil... [more]
A0A6H5KJ16_9PHAE1.650e-9690.11DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A7S3HIX0_9STRA2.190e-5356.67DNA-directed RNA polymerase n=1 Tax=Spumella elong... [more]
A0A836C8M0_9STRA2.150e-5257.38DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A024TY59_9STRA1.100e-4753.07DNA-directed RNA polymerase subunit n=1 Tax=Aphano... [more]
A0A1V9ZTF5_9STRA3.780e-4747.83DNA-directed RNA polymerase subunit n=1 Tax=Achlya... [more]
K8YRY5_NANGC7.040e-4752.46DNA-directed RNA polymerase subunit n=2 Tax=Monodo... [more]
A0A482SXB0_9ARCH3.210e-4653.41DNA-directed RNA polymerase n=1 Tax=archaeon TaxID... [more]
A0A1V9ZEK2_9STRA6.120e-4646.74DNA-directed RNA polymerase subunit n=1 Tax=Thraus... [more]
A0A418BIQ5_9STRA2.060e-4550.84DNA-directed RNA polymerase (Fragment) n=1 Tax=Aph... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007081RNA polymerase Rpb1, domain 5PFAMPF04998RNA_pol_Rpb1_5coord: 56..148
e-value: 1.3E-27
score: 97.0
NoneNo IPR availableGENE3D1.10.357.120coord: 1..81
e-value: 4.1E-11
score: 45.4
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 4..172
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 65..167
IPR015699DNA-directed RNA pol I, largest subunitPANTHERPTHR19376:SF11DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA1coord: 4..172

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12105contigEcto-sp13_S_contig12105:1763..3739 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12105.1793.1mRNA_Ecto-sp13_S_contig12105.1793.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12105 1763..3739 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12105.1793.1 ID=prot_Ecto-sp13_S_contig12105.1793.1|Name=mRNA_Ecto-sp13_S_contig12105.1793.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=184bp
LPDPVLSTLSVNKDLGCVSEAFQKSLQAFLDSNPAPLRDDHTKEDLKALA
ATGTSSPLGPNSLKEAFELLMWVKYMRCLANPGETVGSIAAQSVGEPSTQ
MTLNTFHLAGHGGANVTLGIPRLREIIMTAAKNLKTPSMVVPLREGADRP
AAKSLALRLSRLPLSQLLDNRGGIVVRERLVKGD
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007081RNA_pol_Rpb1_5
IPR015699DNA-dir_RNA_pol1_lsu