mRNA_Ecto-sp13_S_contig68804.17854.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig68804.17854.1
Unique NamemRNA_Ecto-sp13_S_contig68804.17854.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig68804.17854.1 vs. uniprot
Match: D8LGL6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGL6_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 8.180e-45
Identity = 75/77 (97.40%), Postives = 75/77 (97.40%), Query Frame = 1
Query:    1 GVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLPATAFDPRDLFKVEEVEAAGE 231
            GVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLPATAFDPRDLFK EE EAAGE
Sbjct:   42 GVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLPATAFDPRDLFKAEEGEAAGE 118          
BLAST of mRNA_Ecto-sp13_S_contig68804.17854.1 vs. uniprot
Match: A0A6U3R2X0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3R2X0_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 5.750e-12
Identity = 35/77 (45.45%), Postives = 44/77 (57.14%), Query Frame = 1
Query:    1 GVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLPATAF------DPRDLFKVEE 213
            GVA ET IDFDAPH+S SE FAWW GG  FF G+  +  L DP+++    PR  T+P          DP  + KV +
Sbjct:   68 GVAAETCIDFDAPHISSSEGFAWWIGGFLFFLGVGTVALLRDPDAQNPTTPRGPTMPFGGLQIELGGDPSKISKVSD 144          
BLAST of mRNA_Ecto-sp13_S_contig68804.17854.1 vs. uniprot
Match: A0A7S2C717_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C717_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.680e-8
Identity = 30/60 (50.00%), Postives = 37/60 (61.67%), Query Frame = 1
Query:    1 GVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSD---PESKREAVPRAATLP 171
            GVA ETT+DFDAPH+S  E  AWW GG  FF G+    T++D   P  + +A  R  TLP
Sbjct:   69 GVAAETTLDFDAPHISKWEGLAWWFGGFGFFFGVYTFATVTDAIVPSFQNKAAARGPTLP 128          
BLAST of mRNA_Ecto-sp13_S_contig68804.17854.1 vs. uniprot
Match: G4ZU03_PHYSP (Uncharacterized protein n=12 Tax=Phytophthora TaxID=4783 RepID=G4ZU03_PHYSP)

HSP 1 Score: 59.3 bits (142), Expect = 8.830e-8
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 1
Query:    1 GVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLP 171
            GVAPET IDFDAPH+   +A   W  GL  FA ++G+VTL +P+S R+A  R   LP
Sbjct:   59 GVAPETLIDFDAPHIPKYQALRHWLYGLGAFATLMGVVTLYNPDSWRQASKRGNHLP 115          
BLAST of mRNA_Ecto-sp13_S_contig68804.17854.1 vs. uniprot
Match: A0A2D4BRS4_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BRS4_PYTIN)

HSP 1 Score: 59.3 bits (142), Expect = 8.830e-8
Identity = 33/73 (45.21%), Postives = 44/73 (60.27%), Query Frame = 1
Query:    1 GVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLPATAFDPRDLFKVEEVE 219
            GVAPET IDFDAPH+   +A    G  L  FA ++G+VTL DP S R+A  R   LP   +   ++ +V+E E
Sbjct:   59 GVAPETLIDFDAPHIPKYQALKHLGYALAGFATLMGVVTLYDPNSLRQAAKRGNHLPDLKW---EMGEVDEPE 128          
BLAST of mRNA_Ecto-sp13_S_contig68804.17854.1 vs. uniprot
Match: D0P109_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0P109_PHYIT)

HSP 1 Score: 58.9 bits (141), Expect = 1.220e-7
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 1
Query:    1 GVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLP 171
            GVAPET IDFDAPH+   +A   W  GL  FA ++G+VTL +P+S R+A  R   LP
Sbjct:   59 GVAPETLIDFDAPHIPKYQALRQWLYGLGGFATLMGVVTLYNPDSWRQASKRGNHLP 115          
BLAST of mRNA_Ecto-sp13_S_contig68804.17854.1 vs. uniprot
Match: A0A3F2RRW9_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RRW9_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.270e-7
Identity = 33/73 (45.21%), Postives = 44/73 (60.27%), Query Frame = 1
Query:    1 GVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLPATAFDPRDLFKVEEVE 219
            GVAPET IDFDAPH+   +A   W  GL   A ++G VTL +P+S R+A  R   LP   +   +L +V+E E
Sbjct:   59 GVAPETLIDFDAPHIPKYQAVRHWLVGLGGLATLMGFVTLYNPDSLRQASKRGNHLPDLKW---ELGEVDEPE 128          
BLAST of mRNA_Ecto-sp13_S_contig68804.17854.1 vs. uniprot
Match: H3HBD9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HBD9_PHYRM)

HSP 1 Score: 60.1 bits (144), Expect = 4.160e-7
Identity = 34/73 (46.58%), Postives = 45/73 (61.64%), Query Frame = 1
Query:    1 GVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLPATAFDPRDLFKVEEVE 219
            GVAPET IDFDAPH+   +A   W  GL  FA ++G+VTL +P+S R+A  R   LP   +   +L +V E E
Sbjct:  253 GVAPETLIDFDAPHIPKYQALRHWLCGLGAFATLMGVVTLYNPDSWRQASKRGNHLPDLKW---ELGEVNEPE 322          
BLAST of mRNA_Ecto-sp13_S_contig68804.17854.1 vs. uniprot
Match: A0A662XNS9_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XNS9_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.200e-6
Identity = 30/73 (41.10%), Postives = 45/73 (61.64%), Query Frame = 1
Query:    1 GVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLPATAFDPRDLFKVEEVE 219
            GVAPET IDFDAPH+   +A   W   +  FA ++G+VT+ +P+S R+A  R   LP   +   +L +V++ E
Sbjct:   59 GVAPETLIDFDAPHIPKYQALRHWLYAMGAFATLMGVVTVYNPDSWRQAAKRGNHLPDLKW---ELGEVDQPE 128          
BLAST of mRNA_Ecto-sp13_S_contig68804.17854.1 vs. uniprot
Match: A0A3M6VUL9_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VUL9_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.660e-6
Identity = 28/70 (40.00%), Postives = 43/70 (61.43%), Query Frame = 1
Query:    1 GVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLPATAFDPRDLFKVE 210
            GV+PET IDFDAPH+   +A   W  GL     ++G+VTL +P+S R+A  R   LP+  ++  ++ + E
Sbjct:   59 GVSPETLIDFDAPHIPKYQALRHWLCGLGALVTLMGVVTLYNPDSWRQASKRGNHLPSLKWEMGEIDQPE 128          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig68804.17854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LGL6_ECTSI8.180e-4597.40Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6U3R2X0_9STRA5.750e-1245.45Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2C717_9STRA1.680e-850.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
G4ZU03_PHYSP8.830e-852.63Uncharacterized protein n=12 Tax=Phytophthora TaxI... [more]
A0A2D4BRS4_PYTIN8.830e-845.21Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
D0P109_PHYIT1.220e-752.63Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
A0A3F2RRW9_9STRA3.270e-745.21Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
H3HBD9_PHYRM4.160e-746.58Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A662XNS9_9STRA1.200e-641.10Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A3M6VUL9_9STRA1.660e-640.00Uncharacterized protein n=1 Tax=Peronospora effusa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig68804contigEcto-sp13_S_contig68804:3..670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score124.4
Seed ortholog evalue2.2e-26
Seed eggNOG ortholog2880.D8LGL6
Model size668
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG OGs2CYNQ@1,2S5CD@2759
Cds size222
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463945.476244-UTR-Ecto-sp13_S_contig68804:2..441681463945.476244-UTR-Ecto-sp13_S_contig68804:2..44Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig68804 3..44 +
1681463945.4995553-UTR-Ecto-sp13_S_contig68804:266..6701681463945.4995553-UTR-Ecto-sp13_S_contig68804:266..670Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig68804 267..670 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463945.4874406-CDS-Ecto-sp13_S_contig68804:44..2661681463945.4874406-CDS-Ecto-sp13_S_contig68804:44..266Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig68804 45..266 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig68804.17854.1prot_Ecto-sp13_S_contig68804.17854.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig68804 45..266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig68804.17854.1

>prot_Ecto-sp13_S_contig68804.17854.1 ID=prot_Ecto-sp13_S_contig68804.17854.1|Name=mRNA_Ecto-sp13_S_contig68804.17854.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
MSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLPATAFDPR
DLFKVEEVEAAGEDEEEEEEEDE*
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mRNA from alignment at Ecto-sp13_S_contig68804:3..670+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig68804.17854.1 ID=mRNA_Ecto-sp13_S_contig68804.17854.1|Name=mRNA_Ecto-sp13_S_contig68804.17854.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=668bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68804:3..670+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGTTGCGCCCGAGACGACCATCGACTTCGACGCGCCGCACATGTCGAT GTCGGAAGCGTTCGCGTGGTGGGGCGGGGGGTTGACCTTTTTCGCGGGCA TGCTGGGACTGGTCACCCTGAGCGATCCGGAGAGCAAGAGAGAGGCCGTC CCGCGGGCGGCCACCCTCCCCGCGACGGCATTCGACCCGAGGGACCTGTT CAAGGTGGAGGAGGTCGAGGCGGCCGGAGAAGATGAGGAGGAGGAGGAGG AGGAAGACGAGTGATTTAGTATCTATCGAGAAGATTTTGGTTTGGGTGTT TGTGATCGGAAGGGCCGTTGCAAGATATGTTTCGACGAGAGAAGCACTGG TGTTGTCGCTAGGCATTTGTTGTCGGTTAGGTACTTGTTGTCGGTGGCGG CGATGTTCGCGGCGGCCTGTGCACTGCTGTGCGACTTGTTCTAGGGATGT TGGTCCCTTGCGCTTGACGCCAGGGATAGAAGCGTACACGTCCCCGCCAT TGTTGCGTCATTACCTTCGTGAAGTGTTCCATTTGGTTCGGACTTGCTGA GCGCCCTTGCCAGGAAGATGCCTTCGCGGTTGCGATAATGGTTCGTGCGT TGCTGTAAGTCGCGCAATCGAACAAAGGAGAACCGTGCAAGGCGTTCGGG AAGGGATCTTGGATTGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig68804:3..670+

>mRNA_Ecto-sp13_S_contig68804.17854.1 ID=mRNA_Ecto-sp13_S_contig68804.17854.1|Name=mRNA_Ecto-sp13_S_contig68804.17854.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68804:3..670+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGATGTCGGAAGCGTTCGCGTGGTGGGGCGGGGGGTTGACCTTTTT
CGCGGGCATGCTGGGACTGGTCACCCTGAGCGATCCGGAGAGCAAGAGAG
AGGCCGTCCCGCGGGCGGCCACCCTCCCCGCGACGGCATTCGACCCGAGG
GACCTGTTCAAGGTGGAGGAGGTCGAGGCGGCCGGAGAAGATGAGGAGGA
GGAGGAGGAGGAAGACGAGTGA
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