mRNA_Ecto-sp13_S_contig68804.17854.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig68804.17854.1 vs. uniprot
Match: D8LGL6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGL6_ECTSI) HSP 1 Score: 155 bits (391), Expect = 8.180e-45 Identity = 75/77 (97.40%), Postives = 75/77 (97.40%), Query Frame = 1
Query: 1 GVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLPATAFDPRDLFKVEEVEAAGE 231
GVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLPATAFDPRDLFK EE EAAGE
Sbjct: 42 GVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLPATAFDPRDLFKAEEGEAAGE 118
BLAST of mRNA_Ecto-sp13_S_contig68804.17854.1 vs. uniprot
Match: A0A6U3R2X0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3R2X0_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 5.750e-12 Identity = 35/77 (45.45%), Postives = 44/77 (57.14%), Query Frame = 1
Query: 1 GVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLPATAF------DPRDLFKVEE 213
GVA ET IDFDAPH+S SE FAWW GG FF G+ + L DP+++ PR T+P DP + KV +
Sbjct: 68 GVAAETCIDFDAPHISSSEGFAWWIGGFLFFLGVGTVALLRDPDAQNPTTPRGPTMPFGGLQIELGGDPSKISKVSD 144
BLAST of mRNA_Ecto-sp13_S_contig68804.17854.1 vs. uniprot
Match: A0A7S2C717_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C717_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 1.680e-8 Identity = 30/60 (50.00%), Postives = 37/60 (61.67%), Query Frame = 1
Query: 1 GVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSD---PESKREAVPRAATLP 171
GVA ETT+DFDAPH+S E AWW GG FF G+ T++D P + +A R TLP
Sbjct: 69 GVAAETTLDFDAPHISKWEGLAWWFGGFGFFFGVYTFATVTDAIVPSFQNKAAARGPTLP 128
BLAST of mRNA_Ecto-sp13_S_contig68804.17854.1 vs. uniprot
Match: G4ZU03_PHYSP (Uncharacterized protein n=12 Tax=Phytophthora TaxID=4783 RepID=G4ZU03_PHYSP) HSP 1 Score: 59.3 bits (142), Expect = 8.830e-8 Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 1
Query: 1 GVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLP 171
GVAPET IDFDAPH+ +A W GL FA ++G+VTL +P+S R+A R LP
Sbjct: 59 GVAPETLIDFDAPHIPKYQALRHWLYGLGAFATLMGVVTLYNPDSWRQASKRGNHLP 115
BLAST of mRNA_Ecto-sp13_S_contig68804.17854.1 vs. uniprot
Match: A0A2D4BRS4_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BRS4_PYTIN) HSP 1 Score: 59.3 bits (142), Expect = 8.830e-8 Identity = 33/73 (45.21%), Postives = 44/73 (60.27%), Query Frame = 1
Query: 1 GVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLPATAFDPRDLFKVEEVE 219
GVAPET IDFDAPH+ +A G L FA ++G+VTL DP S R+A R LP + ++ +V+E E
Sbjct: 59 GVAPETLIDFDAPHIPKYQALKHLGYALAGFATLMGVVTLYDPNSLRQAAKRGNHLPDLKW---EMGEVDEPE 128
BLAST of mRNA_Ecto-sp13_S_contig68804.17854.1 vs. uniprot
Match: D0P109_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0P109_PHYIT) HSP 1 Score: 58.9 bits (141), Expect = 1.220e-7 Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 1
Query: 1 GVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLP 171
GVAPET IDFDAPH+ +A W GL FA ++G+VTL +P+S R+A R LP
Sbjct: 59 GVAPETLIDFDAPHIPKYQALRQWLYGLGGFATLMGVVTLYNPDSWRQASKRGNHLP 115
BLAST of mRNA_Ecto-sp13_S_contig68804.17854.1 vs. uniprot
Match: A0A3F2RRW9_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RRW9_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 3.270e-7 Identity = 33/73 (45.21%), Postives = 44/73 (60.27%), Query Frame = 1
Query: 1 GVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLPATAFDPRDLFKVEEVE 219
GVAPET IDFDAPH+ +A W GL A ++G VTL +P+S R+A R LP + +L +V+E E
Sbjct: 59 GVAPETLIDFDAPHIPKYQAVRHWLVGLGGLATLMGFVTLYNPDSLRQASKRGNHLPDLKW---ELGEVDEPE 128
BLAST of mRNA_Ecto-sp13_S_contig68804.17854.1 vs. uniprot
Match: H3HBD9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HBD9_PHYRM) HSP 1 Score: 60.1 bits (144), Expect = 4.160e-7 Identity = 34/73 (46.58%), Postives = 45/73 (61.64%), Query Frame = 1
Query: 1 GVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLPATAFDPRDLFKVEEVE 219
GVAPET IDFDAPH+ +A W GL FA ++G+VTL +P+S R+A R LP + +L +V E E
Sbjct: 253 GVAPETLIDFDAPHIPKYQALRHWLCGLGAFATLMGVVTLYNPDSWRQASKRGNHLPDLKW---ELGEVNEPE 322
BLAST of mRNA_Ecto-sp13_S_contig68804.17854.1 vs. uniprot
Match: A0A662XNS9_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XNS9_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 1.200e-6 Identity = 30/73 (41.10%), Postives = 45/73 (61.64%), Query Frame = 1
Query: 1 GVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLPATAFDPRDLFKVEEVE 219
GVAPET IDFDAPH+ +A W + FA ++G+VT+ +P+S R+A R LP + +L +V++ E
Sbjct: 59 GVAPETLIDFDAPHIPKYQALRHWLYAMGAFATLMGVVTVYNPDSWRQAAKRGNHLPDLKW---ELGEVDQPE 128
BLAST of mRNA_Ecto-sp13_S_contig68804.17854.1 vs. uniprot
Match: A0A3M6VUL9_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VUL9_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 1.660e-6 Identity = 28/70 (40.00%), Postives = 43/70 (61.43%), Query Frame = 1
Query: 1 GVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLPATAFDPRDLFKVE 210
GV+PET IDFDAPH+ +A W GL ++G+VTL +P+S R+A R LP+ ++ ++ + E
Sbjct: 59 GVSPETLIDFDAPHIPKYQALRHWLCGLGALVTLMGVVTLYNPDSWRQASKRGNHLPSLKWEMGEIDQPE 128 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig68804.17854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig68804.17854.1 >prot_Ecto-sp13_S_contig68804.17854.1 ID=prot_Ecto-sp13_S_contig68804.17854.1|Name=mRNA_Ecto-sp13_S_contig68804.17854.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp MSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLPATAFDPRback to top mRNA from alignment at Ecto-sp13_S_contig68804:3..670+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig68804.17854.1 ID=mRNA_Ecto-sp13_S_contig68804.17854.1|Name=mRNA_Ecto-sp13_S_contig68804.17854.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=668bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68804:3..670+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig68804:3..670+ >mRNA_Ecto-sp13_S_contig68804.17854.1 ID=mRNA_Ecto-sp13_S_contig68804.17854.1|Name=mRNA_Ecto-sp13_S_contig68804.17854.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68804:3..670+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |