mRNA_Ecto-sp13_S_contig6875.17844.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6875.17844.1
Unique NamemRNA_Ecto-sp13_S_contig6875.17844.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6875.17844.1 vs. uniprot
Match: D7G5Y1_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y1_ECTSI)

HSP 1 Score: 512 bits (1319), Expect = 1.100e-172
Identity = 268/272 (98.53%), Postives = 270/272 (99.26%), Query Frame = 3
Query:   33 RVASMGPGDFFGEGGVVSAQPRGESVRAVTPVKVINVSLASCHRMIDAPGKVSSSLRRVALSRALFRAKNVVRAVHSVTKRLLGPGEAVFQQGDRGSSLFTVEEGELNVVKEHSGVHRTVARLSPGSLFGEMALMTAQPRSASVVCAAEGGCAVEEISGDDFARLLMARRTGFRRDVMRMLRARQFRHGVYKLLTELGSEATFSDEELRQVFDRADTAKSGTLSLGELKAAFLRADPLLDESAVEEIMTMLDLDAVGSVSFDEFLKIIRWDP 848
            RVASMGPGDFFGEGGVVSAQPRGESVRAVTPVKVINVSLASCHRMIDAPGKVSSSLRRVALSRALFRAKNVVRAVHSVTKRLLGPGEAVF+QGDRGSSLFTVEEGELNVVKEHSGVHRTVARLSPGSLFGEMALMTAQPRSASVVCAAEGGCAVEEISGDDFARLLMARRTGFRRDVMRMLRARQFRHGVYKLLTELGSEATFSDEELRQVFDRADTAKSGTLSL ELKAAFLRADPLLDESAVEEIMTMLDLDAVG VSF+EFLKIIRWDP
Sbjct:  633 RVASMGPGDFFGEGGVVSAQPRGESVRAVTPVKVINVSLASCHRMIDAPGKVSSSLRRVALSRALFRAKNVVRAVHSVTKRLLGPGEAVFRQGDRGSSLFTVEEGELNVVKEHSGVHRTVARLSPGSLFGEMALMTAQPRSASVVCAAEGGCAVEEISGDDFARLLMARRTGFRRDVMRMLRARQFRHGVYKLLTELGSEATFSDEELRQVFDRADTAKSGTLSLDELKAAFLRADPLLDESAVEEIMTMLDLDAVGCVSFEEFLKIIRWDP 904          
BLAST of mRNA_Ecto-sp13_S_contig6875.17844.1 vs. uniprot
Match: A0A6H5JE67_9PHAE (cGMP-dependent protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE67_9PHAE)

HSP 1 Score: 513 bits (1321), Expect = 2.350e-170
Identity = 267/272 (98.16%), Postives = 271/272 (99.63%), Query Frame = 3
Query:   33 RVASMGPGDFFGEGGVVSAQPRGESVRAVTPVKVINVSLASCHRMIDAPGKVSSSLRRVALSRALFRAKNVVRAVHSVTKRLLGPGEAVFQQGDRGSSLFTVEEGELNVVKEHSGVHRTVARLSPGSLFGEMALMTAQPRSASVVCAAEGGCAVEEISGDDFARLLMARRTGFRRDVMRMLRARQFRHGVYKLLTELGSEATFSDEELRQVFDRADTAKSGTLSLGELKAAFLRADPLLDESAVEEIMTMLDLDAVGSVSFDEFLKIIRWDP 848
            RVASMGPGDFFGEGGVVSAQPRGESVRAVTPVKV+NVSLASCHRMIDAPGKVSSSLRRVALSRALFRAKNVVRAVHSVTKRLLGPGEAVF+QGDRGSSLFTVEEGELNVVKEHSGVHRTVARL PGSLFGEMALMTAQPRSASVVCAAEGGCAV+EISGDDFARLLMARRTGFRRDVMRMLRARQFRHGVYKLLTELGSEATF+DEELRQVFDRADTAKSGTLSLGELKAAFLRADPLLDESAVEEIMTMLDLDAVGSVSFDEFLKIIRWDP
Sbjct:  865 RVASMGPGDFFGEGGVVSAQPRGESVRAVTPVKVMNVSLASCHRMIDAPGKVSSSLRRVALSRALFRAKNVVRAVHSVTKRLLGPGEAVFRQGDRGSSLFTVEEGELNVVKEHSGVHRTVARLPPGSLFGEMALMTAQPRSASVVCAAEGGCAVDEISGDDFARLLMARRTGFRRDVMRMLRARQFRHGVYKLLTELGSEATFTDEELRQVFDRADTAKSGTLSLGELKAAFLRADPLLDESAVEEIMTMLDLDAVGSVSFDEFLKIIRWDP 1136          
BLAST of mRNA_Ecto-sp13_S_contig6875.17844.1 vs. uniprot
Match: D8LCM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCM7_ECTSI)

HSP 1 Score: 295 bits (755), Expect = 6.110e-97
Identity = 176/268 (65.67%), Postives = 181/268 (67.54%), Query Frame = 3
Query:   45 MGPGDFFGEGGVVSAQPRGESVRAVTPVKVINVSLASCHRMIDAPGKVSSSLRRVALSRALFRAKNVVRAVHSVTKRLLGPGEAVFQQGDRGSSLFTVEEGELNVVKEHSGVHRTVARLSPGSLFGEMALMTAQPRSASVVCAAEGGCAVEEISGDDFARLLMARRTGFRRDVMRMLRARQFRHGVYKLLTELGSEATFSDEELRQVFDRADTAKSGTLSLGELKAAFLRADPLLDESAVEEIMTMLDLDAVGSVSFDEFLKIIRWDP 848
            MGPGDFF EGGVVSAQPRGESVRAV PVKVINVSLASC RMIDAPGKVSSSLRRVALSRALFRAKNVVRAVHSVTKRLLGPGEAVF+QGDRGSSLFTVEEGELNVVKEHSGVHRTV RLSPGS                       G A    S                                      LG+   F      +    A+TAKSGTLSL ELKAA LRADPLL ESAVEEIMTMLDL+AVGSVSF EFLKIIRWDP
Sbjct:    1 MGPGDFFCEGGVVSAQPRGESVRAVIPVKVINVSLASCRRMIDAPGKVSSSLRRVALSRALFRAKNVVRAVHSVTKRLLGPGEAVFRQGDRGSSLFTVEEGELNVVKEHSGVHRTVVRLSPGS----------------------SGTACTRCSHS------------------------------------LGARRPFRTRSCGR--SSAETAKSGTLSLAELKAALLRADPLLHESAVEEIMTMLDLNAVGSVSFQEFLKIIRWDP 208          
BLAST of mRNA_Ecto-sp13_S_contig6875.17844.1 vs. uniprot
Match: A0A836CF38_9STRA (cGMP-dependent protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF38_9STRA)

HSP 1 Score: 255 bits (651), Expect = 4.810e-75
Identity = 141/281 (50.18%), Postives = 187/281 (66.55%), Query Frame = 3
Query:   33 RVASMGPGDFFGEGGVVSAQPRGESVRAVTPVKVINVSLASCHRMIDAPGKVSSSLRRVALSRALFRAKNVVRAVHSVTKRLLGPGEAVFQQGDRGSSLFTVEEGELNVVKEHSGVH-RTVARLSPGSLFGEMALMTAQPRSASVVCAAE-GGCAVEEISGDDFARLLMARRTGFRRDVMRMLRARQFRHGVYKLLT-------ELGSEATFSDEELRQVFDRADTAKSGTLSLGELKAAFLRADPLLDESAVEEIMTMLDLDAVGSVSFDEFLKIIRWDP 848
            RV  MG GDFFGEGG+V   PR  S+RAVTP+K+I V   SC RM+   G  SS+LR VA SR + R K ++RA+++V +  +  GE V +QG+ G S++T+ +G L+V+KE   +  RTVA L PGS FGEMA++  QPR+A+V C+     C ++E+SG +F +LLM+R + FRRDV +++RARQFRHGVYKLL         L S  TFS EELR VFD  D   SG + L EL  A  R D  L E  V EI+ +LDLDA  ++SF+EF+KII +DP
Sbjct:  467 RVDVMGAGDFFGEGGLVLNAPRSASIRAVTPIKLIRVEKDSCQRMLKTTGAASSNLREVAFSRQMVRTKALLRALNTVRRLKVRGGEVVVRQGEVGKSMYTIVDGNLDVIKESPPLAPRTVAVLKPGSYFGEMAVLLKQPRNATVACSRGCEWCVIDEVSGAEFLKLLMSRPSSFRRDVQQLMRARQFRHGVYKLLAAQEVAVPSLDSRTTFSTEELRAVFDAVDVDDSGEIELSELTEALFRVDSGLTEEGVREIIAILDLDASNTISFEEFVKIISFDP 747          
BLAST of mRNA_Ecto-sp13_S_contig6875.17844.1 vs. uniprot
Match: D7FSY6_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSY6_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 3.380e-37
Identity = 104/267 (38.95%), Postives = 149/267 (55.81%), Query Frame = 3
Query:   27 PNRVASMGPGDFFGEGGVVSAQPRGESVRAVTPVKVINVSLASCHRMIDAPGKVSSSLRRVALSRALFRAKNVVRAVHSVTKRLLGPGEAVFQQGDRGSSLFTVEEGELNVV---KEHSGVHRT-------VARLSPGSLFGEMALMTAQPRSASVVCAA-----EGG---------CAVEEISGDDFARLLMARRTGFRRDVMRMLRARQFRHGVYKLLTELGSEATFSDEELRQVFDRADTAKSGTLSLGELKAAFLRADPLLDE 755
            P ++AS+  GD FGE  ++    R  +VR  + V+ + +   S  RM+      S++LR +++ R + RAK ++RAV S+T+R L  G AV QQGD G S++TV EG+L+V    +E  G  R        VA LS G +FGEMALM  QPRSA+VVC++     EGG         C V EI G+DF R+L  +   F + +  ++R R FR  +  LLT  G+E T S E++R  F+  DT KSG L   E+  A  + +  L E
Sbjct:  392 PVKLASLSSGDIFGESAMIQGGSRSATVRCASEVQAVRIGKDSLGRMMKGTKTASANLREMSILRDISRAKTLLRAVGSITQRRLPAGSAVVQQGDLGDSMYTVVEGKLDVRAKGREGEGNGRAGHPYGDKVASLSAGDVFGEMALMLKQPRSATVVCSSPTLPGEGGGTDRVPGGFCVVNEIKGEDFVRMLK-QSDSFLKSMKVIMRTRLFRRAML-LLTAAGTE-TLSKEKMRAAFEMVDTDKSGYLDANEVLEALKKLESSLGE 655          
BLAST of mRNA_Ecto-sp13_S_contig6875.17844.1 vs. uniprot
Match: A0A522MW20_9BACT (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A522MW20_9BACT)

HSP 1 Score: 77.0 bits (188), Expect = 2.170e-12
Identity = 40/95 (42.11%), Postives = 59/95 (62.11%), Query Frame = 3
Query:  255 VHSVTKRLLGPGEAVFQQGDRGSSLFTVEEGELNV-VKEHSGVHRTVARLSPGSLFGEMALMTAQPRSASVVCAAEGGCAVEEISGDDFARLLMA 536
            + +   R    GE + ++GDRG+S F +EEGE+ V   +HSG H  +ARL PG  FGE+A++T +PR+A++V  A  G  V EIS  D  ++  A
Sbjct:  156 ISTTAVRSFAQGETIVREGDRGTSWFLIEEGEVEVQTTDHSGRHLVLARLGPGEFFGEVAVLTGKPRTATIV--ARNGVTVIEISRQDLDQIAAA 248          
BLAST of mRNA_Ecto-sp13_S_contig6875.17844.1 vs. uniprot
Match: UPI001FD85E16 (mechanosensitive ion channel family protein n=1 Tax=Roseomonas oryzicola TaxID=535904 RepID=UPI001FD85E16)

HSP 1 Score: 74.3 bits (181), Expect = 4.150e-11
Identity = 55/131 (41.98%), Postives = 71/131 (54.20%), Query Frame = 3
Query:  171 DAPGKVSSSLRRVALSRA-LFRAKN------VVRAVHSVTKRLLGPGEAVFQQGDRGSSLFTVEEGELNV-VKEHSGVHRTVARLSPGSLFGEMALMTAQPRSASVVCAAEGGCAVEEISGDDFARLLMAR 539
             AP  V    RR  L    LFRA N      +  A+H VT   +  GEAV ++G  G SL+ + EG L V V +  G     ARL PG++FGEM+L+T QPRSA+V+ A +   AV E+   D   LL AR
Sbjct:  203 QAPPAVEDGARRALLDATDLFRAFNAGERAALAAAMHEVT---VAEGEAVVRRGQAGDSLYLLAEGVLEVRVADADGAEFAAARLYPGAVFGEMSLLTGQPRSATVLAATDA--AVFELRKSDLDPLLRAR 328          
BLAST of mRNA_Ecto-sp13_S_contig6875.17844.1 vs. uniprot
Match: UPI001F212BE4 (cyclic nucleotide-binding domain-containing protein n=1 Tax=Myxococcus stipitatus TaxID=83455 RepID=UPI001F212BE4)

HSP 1 Score: 72.8 bits (177), Expect = 6.850e-11
Identity = 39/69 (56.52%), Postives = 48/69 (69.57%), Query Frame = 3
Query:  264 VTKRLLGPGEAVFQQGDRGSSLFTVEEGELNVVKEHS-GVHRTVARLSPGSLFGEMALMTAQPRSASVV 467
            V  R L PG  V ++GDRGSS+F + EG + VV+E   G  RTVA+LS G  FGEMALMT  PR+A+VV
Sbjct:   42 VWTRFLPPGHMVVREGDRGSSMFVIVEGRVAVVRERGVGAPRTVAQLSAGEFFGEMALMTDCPRTATVV 110          
BLAST of mRNA_Ecto-sp13_S_contig6875.17844.1 vs. uniprot
Match: A0A2T3MWX2_9GAMM (Sodium:proton antiporter n=1 Tax=Photobacterium lipolyticum TaxID=266810 RepID=A0A2T3MWX2_9GAMM)

HSP 1 Score: 73.9 bits (180), Expect = 1.150e-10
Identity = 47/175 (26.86%), Postives = 88/175 (50.29%), Query Frame = 3
Query:   45 MGPGDFFGEGGVVSAQPRGESVRAVTPVKVINVSLASCHRMIDAPGKVSSSLRRVALSR-------------ALFRAKNVVRAVHSVTKRLLGPGEAVFQQGDRGSSLFTVEEGELNVVKEHSGVHRTVARLSPGSLFGEMALMTAQPRSASVVCAAEGGCAVEEISGDDFARLL 530
            +G GDFFGE  +++ +PR   V A+   +++ + +    ++  A   +   + R+A  R             A   + ++      +   L+ PGE V  +G+ G++++ +  G ++V   H+ +     RLS G  FGE+AL+T +PR+A V  A+   C +  + G+DF+ LL
Sbjct:  764 LGSGDFFGELALLTQEPRSADVTAIAYCQLLVLRVEDFQKITSAHPYLQERITRIASERLDPESLVAKVPLFAGLDSDHIADIASQLKPLLVAPGERVVHKGEVGNAMYFIAAGSVDVTNNHAPI-----RLSRGDFFGELALLTQEPRNADVTAASY--CELLVLQGNDFSPLL 931          
BLAST of mRNA_Ecto-sp13_S_contig6875.17844.1 vs. uniprot
Match: A0A257UFJ4_9BACT (Cyclic nucleotide-binding domain-containing protein n=2 Tax=unclassified Acidobacteria TaxID=305072 RepID=A0A257UFJ4_9BACT)

HSP 1 Score: 71.6 bits (174), Expect = 1.740e-10
Identity = 43/123 (34.96%), Postives = 67/123 (54.47%), Query Frame = 3
Query:  171 DAPGKVSSSLRRVALSRALFRAKNVVRAVHSVTKRLLGPGEAVFQQGDRGSSLFTVEEGELNV-VKEHSGVHRTVARLSPGSLFGEMALMTAQPRSASVVCAAEGGCAVEEISGDDFARLLMA 536
            DA  + +   R  +   A F    + R + +   R    GE + ++GDRG+S F +EEGE+ V   + SG H  +A+L PG  FGE+A++T +PR+A++V  A  G    EIS  D  ++  A
Sbjct:  137 DAMARQAEKERAASRFFAEFPPAALERLISTTAVRSFAAGEKIVREGDRGASWFLIEEGEVEVQTTDSSGRHLLLAQLGPGEFFGEVAVLTGKPRTATIV--ARNGVTTIEISRQDLDQIAAA 257          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6875.17844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5Y1_ECTSI1.100e-17298.53cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A6H5JE67_9PHAE2.350e-17098.16cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
D8LCM7_ECTSI6.110e-9765.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CF38_9STRA4.810e-7550.18cGMP-dependent protein kinase n=1 Tax=Tribonema mi... [more]
D7FSY6_ECTSI3.380e-3738.95cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A522MW20_9BACT2.170e-1242.11Cyclic nucleotide-binding domain-containing protei... [more]
UPI001FD85E164.150e-1141.98mechanosensitive ion channel family protein n=1 Ta... [more]
UPI001F212BE46.850e-1156.52cyclic nucleotide-binding domain-containing protei... [more]
A0A2T3MWX2_9GAMM1.150e-1026.86Sodium:proton antiporter n=1 Tax=Photobacterium li... [more]
A0A257UFJ4_9BACT1.740e-1034.96Cyclic nucleotide-binding domain-containing protei... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6875contigEcto-sp13_S_contig6875:4566..7913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score507.7
Seed ortholog evalue3.4e-141
Seed eggNOG ortholog2880.D7G5Y1
Model size1057
KEGG koko:K07376,ko:K08813,ko:K13412
KEGG Pathwayko04022,ko04270,ko04540,ko04611,ko04626,ko04713,ko04714,ko04730,ko04740,ko04923,ko04970,ko05145,map04022,map04270,map04540,map04611,map04626,map04713,map04714,map04730,map04740,map04923,map04970,map05145
KEGG ModuleM00694
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009931,GO:0009987,GO:0010857,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019538,GO:0023052,GO:0035556,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0046777,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071704,GO:0140096,GO:1901564
Exons6
EggNOG free text desc.cGMP-dependent protein kinase activity
EggNOG OGsCOG0664@1,KOG0032@1,KOG0032@2759,KOG0614@2759
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-03_002300.1
EC2.7.11.1,2.7.11.12
Cds size807
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6875.17844.1prot_Ecto-sp13_S_contig6875.17844.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6875 4772..7869 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463944.1105888-UTR-Ecto-sp13_S_contig6875:4565..47711681463944.1105888-UTR-Ecto-sp13_S_contig6875:4565..4771Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6875 4566..4771 -
1681463944.181207-UTR-Ecto-sp13_S_contig6875:7869..79131681463944.181207-UTR-Ecto-sp13_S_contig6875:7869..7913Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6875 7870..7913 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463944.1222737-CDS-Ecto-sp13_S_contig6875:4771..48011681463944.1222737-CDS-Ecto-sp13_S_contig6875:4771..4801Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6875 4772..4801 -
1681463944.1318657-CDS-Ecto-sp13_S_contig6875:5341..55121681463944.1318657-CDS-Ecto-sp13_S_contig6875:5341..5512Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6875 5342..5512 -
1681463944.1412795-CDS-Ecto-sp13_S_contig6875:6044..62861681463944.1412795-CDS-Ecto-sp13_S_contig6875:6044..6286Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6875 6045..6286 -
1681463944.1506634-CDS-Ecto-sp13_S_contig6875:6635..68261681463944.1506634-CDS-Ecto-sp13_S_contig6875:6635..6826Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6875 6636..6826 -
1681463944.1600602-CDS-Ecto-sp13_S_contig6875:7072..71581681463944.1600602-CDS-Ecto-sp13_S_contig6875:7072..7158Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6875 7073..7158 -
1681463944.1721241-CDS-Ecto-sp13_S_contig6875:7782..78691681463944.1721241-CDS-Ecto-sp13_S_contig6875:7782..7869Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6875 7783..7869 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6875.17844.1

>prot_Ecto-sp13_S_contig6875.17844.1 ID=prot_Ecto-sp13_S_contig6875.17844.1|Name=mRNA_Ecto-sp13_S_contig6875.17844.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=269bp
MGPGDFFGEGGVVSAQPRGESVRAVTPVKVINVSLASCHRMIDAPGKVSS
SLRRVALSRALFRAKNVVRAVHSVTKRLLGPGEAVFQQGDRGSSLFTVEE
GELNVVKEHSGVHRTVARLSPGSLFGEMALMTAQPRSASVVCAAEGGCAV
EEISGDDFARLLMARRTGFRRDVMRMLRARQFRHGVYKLLTELGSEATFS
DEELRQVFDRADTAKSGTLSLGELKAAFLRADPLLDESAVEEIMTMLDLD
AVGSVSFDEFLKIIRWDP*
back to top

mRNA from alignment at Ecto-sp13_S_contig6875:4566..7913-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6875.17844.1 ID=mRNA_Ecto-sp13_S_contig6875.17844.1|Name=mRNA_Ecto-sp13_S_contig6875.17844.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6875:4566..7913- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGTGTTTCCTCGTTCCTCCCCTCGACCGAACAGGGTGGCTTCCATGGGA CCCGGCGACTTCTTCGGCGAGGGAGGGGTCGTTTCGGCACAGCCCCGGGG AGAATCCGTGCGTGCGGTAACGCCTGTCAAGGTATTGAACGCCCGAAACG CCTCATTTGTCTTCGAAAGGGGCGGTGAGGGGGGATTGTAGGCTTTGGAA TCTGGAATCAAGGGGAGGGGTTATTTCAGGGTGAGGAGGGCTCGATTTGT TTTTGTTCAAAATGAGAGGGTTCTTGGTGTGGGGGGGGCTTGTTTTTGGG GCGAGTGAAAAGGAGGGAGCACGCGGTGCCTGTCGTGACATCGAGTCAAA TGCTTGGTTTCAAGTGTTGGGGTGTTCCCGGCTTGTGTCAGAGGCCGGCT CGTCCGTTCTTGGACGCAGAGGAAGTCCGGTGGAAATTCTATCGGTTTAC TTTTTTCTGTTTCACCCGGATGCTGTCTCTATCTCTGCACTCACTTGTTG GATTGTGAATGTCAATGTTTGCTTTTGGTGGAACACTGGTACTGACTCCA CGTGTCCAGACGGAAATTCTTGAGGATGAGCAGGTCTCGACATGAACCAC ACGGGAGGTCGTGAGGGTATTGCATGTGGATAGAAGCGGTAGCACGCGTC ACGAAACTACTAGAGTATCTACTGAATCACACACATTGCCCTACTCTGTG CCTTTGACCCCCCCCCGCCATGTGTGTGGCTTGCGGCCATACTGCACTTG CGAAGGTGATTAACGTCAGCTTGGCCAGCTGCCACCGGATGATCGACGCG CCTGGAAAGGTGTCTTCCAGCCTCCGTCGGGTGGCTCTCAGGTTTGTTGA GCCGCTTTTCCTCCTTCTCGATTGAAAGAAATGCTTAGTCAATTGTCCCA AGTGACTTCATTCATCAACGAAACCGTTTGGTGGCTCCTCTGTCGTAACT GAAAGACATGCTTGGTCAATGGTCCCAAGTGGAACACCACAAAAACCTCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCA CCGGCGCCGGCGGCCCTCTTCCTCTGTGCGATCTCAGCCGGGCGCTGTTC AGGGCGAAGAATGTCGTTCGCGCAGTGCACTCCGTCACGAAGAGGCTGCT GGGTCCCGGGGAGGCGGTGTTTCAGCAGGGGGACAGGGGTTCTTCGCTGT TCACGGTGGAGGAGGGAGAGCTCAACGTGGTGAAGGAGCACTCGGGCGTC CACCGCACGGTGGCCCGCTTGTCGCCAGGTGCGAGTCATCCGGTGTTGGT TGGAGTCAGCCGTTTGTAACGCGATCGATGCTATGCTTGCGCTTGCACTC GCAGCACAGCACACCTTTTGATGCCGCTCCGTTGCTGGTGTTGAGCCGTT GACAATGCGATCAATGCTGAGTACAAAGAAAGCGTTCGTAGCTCAGAGGG TTAAGGAGATTGTTGGTGGCTCACGAAGGCAAGGGACGCGTGCACAGCTC GCACACGCGACACACAGCACACGCTTCATGACCCCTGGGACAGCGAAAAA CCGGCATGCCGCTCCGTCCCGCCGTCACCGGACGAACGACTTCGGTTTTC ATGCACACGCCCCCGTCCGTTCTGCAGGGAGCTTGTTCGGAGAGATGGCG CTCATGACGGCGCAGCCCAGGTCCGCCTCTGTCGTCTGCGCCGCCGAGGG CGGCTGCGCGGTGGAGGAGATAAGCGGCGACGACTTCGCCCGGCTGCTGA TGGCGAGGCGGACGGGGTTCCGCAGAGACGTGATGCGCATGCTTCGGGCG AGGCAGTTCCGGCACGGCGTGTACAAGCTGCTCACGGAGCTTGGAAGCGA GGCGACCTTTTCGGACGAGGTGATTTTTTGATAAATTTAGCACCCGCGCG TTTTGACAAAAAACTCAATTTTGGGTTGAGGCTCAATTTCTTACTTTCGT CAGGACCGTCGAGCGTAGGTCAAAATTTCGTGTTTGTTGGTGTAGACTGT GCCACCGCGGCCGGGGCAGCCAAATGGAGAGCGAACCTCTGATCGAGTCG ACCGTGGCGACAGAACCCGAGCACGGCTCAACAGATAGAGGCACAGGGAT CGCAAAAGACGGATATAGGGGCATGGGGGTATTTTTTCATTTTCAGTTTT GGGGATCCGATGTAGAGTTTAGGTGTAGGATCCAAAGTGTAGGAGGTGTG TTTCTCAGCCGGATTTTCTTATGATATTGCCGCCCAAATCTTGTCCTTAG CATCGACCGCGCTAAAGCGGCGGACCAATAGAAATACGTCATTCATTCTC AGCACGGTCCAAAACGTTTCTAAAGGCCATGATGTTCTGCTTATCGAGGG AAGAGTTGGCAAGCAGCATGTCTTCCTCCCTGGTGTGTCTTGCGCGCGCA GGAGCTGCGGCAGGTCTTCGACCGAGCTGACACGGCCAAGTCAGGCACAC TAAGCCTCGGCGAGCTCAAGGCTGCCTTCCTCAGAGCTGACCCCCTCCTG GACGAGTCCGCGGTGGAGGAGATCATGACCATGCTGGACCTCGACGCCGT CGGCAGCGTGTCTTTCGACGAGGTGGGTTCGGTAGCGGGACGTTTTGTGA CCCCGCGCGCGGCCAAGTGAAGCACCGTTTTTGTATTGATGAAGTATTGT TCGAGATCCTCAGGAGAACCGTTCCGTGTGTTCCTCTTTTTTGGGGTGTT CCGTGAGTTTTGTTTTTTCTGGTTCGGCGGAAGAGGCGGAGGCAAGTTTC GTCAGCCGCGGTTTTGGGCGACCAATTTCGTTTTCCCACCTCTACAATAT GTCCGTCTTTCGCAAGGCGAACGTTCCCTTCTATCGAATACACGCCGAAA AACTGTTTTTTTTTTTCGAAGTAGATGGGCATTTTATTCGATTGGTCACG GGCGAGCACTAAACTGTTTTGTTGTGAGAGTGCCGTTGTTCTTGATCGTT GGCTTGTCCCCGTCCCAACCTTCGCTGACATCTCGACCCTCGCTGCTGCT GGTGGTGCCGCCACCATCGCTGACACGGCAGCAGCGCGTAATATTCGTTG AGTTCACAGCTCTACCCATACCGCTATCGTCTCCTGCTTGTTGATGCTGC TGCTCGCCGCAGTTCTTGAAGATCATCCGATGGGACCCGTGAGACATGGA CCGGTTGTGACGAGAGTTGGGGTGCATCGAAGACGGGTGGGCTGACGATG ACGACAGCGAACTCTTCCATGGCGCCTTAGTGTGGTTCGCCTTTTATTTA TCACGGAGAGATGCGCTCATCATCAAAGCCCCCGTCTTCATTCGTTTTCC TTCCCAAAACTGCATCCACCGCTCGCCGAGATTGTGTTCGTGTGTGTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6875:4566..7913-

>mRNA_Ecto-sp13_S_contig6875.17844.1 ID=mRNA_Ecto-sp13_S_contig6875.17844.1|Name=mRNA_Ecto-sp13_S_contig6875.17844.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=807bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6875:4566..7913- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGACCCGGCGACTTCTTCGGCGAGGGAGGGGTCGTTTCGGCACAGCC
CCGGGGAGAATCCGTGCGTGCGGTAACGCCTGTCAAGGTGATTAACGTCA
GCTTGGCCAGCTGCCACCGGATGATCGACGCGCCTGGAAAGGTGTCTTCC
AGCCTCCGTCGGGTGGCTCTCAGCCGGGCGCTGTTCAGGGCGAAGAATGT
CGTTCGCGCAGTGCACTCCGTCACGAAGAGGCTGCTGGGTCCCGGGGAGG
CGGTGTTTCAGCAGGGGGACAGGGGTTCTTCGCTGTTCACGGTGGAGGAG
GGAGAGCTCAACGTGGTGAAGGAGCACTCGGGCGTCCACCGCACGGTGGC
CCGCTTGTCGCCAGGGAGCTTGTTCGGAGAGATGGCGCTCATGACGGCGC
AGCCCAGGTCCGCCTCTGTCGTCTGCGCCGCCGAGGGCGGCTGCGCGGTG
GAGGAGATAAGCGGCGACGACTTCGCCCGGCTGCTGATGGCGAGGCGGAC
GGGGTTCCGCAGAGACGTGATGCGCATGCTTCGGGCGAGGCAGTTCCGGC
ACGGCGTGTACAAGCTGCTCACGGAGCTTGGAAGCGAGGCGACCTTTTCG
GACGAGGAGCTGCGGCAGGTCTTCGACCGAGCTGACACGGCCAAGTCAGG
CACACTAAGCCTCGGCGAGCTCAAGGCTGCCTTCCTCAGAGCTGACCCCC
TCCTGGACGAGTCCGCGGTGGAGGAGATCATGACCATGCTGGACCTCGAC
GCCGTCGGCAGCGTGTCTTTCGACGAGTTCTTGAAGATCATCCGATGGGA
CCCGTGA
back to top