prot_Ecto-sp13_S_contig68741.17841.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig68741.17841.1
Unique Name	prot_Ecto-sp13_S_contig68741.17841.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	109

Homology

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BLAST of mRNA_Ecto-sp13_S_contig68741.17841.1 vs. uniprot
Match: A0A6H5LCC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCC1_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 1.990e-70
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0

Query:    5 ETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGVSGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTRASF 108
            ETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGVSGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTRASF
Sbjct:  249 ETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGVSGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTRASF 352

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BLAST of mRNA_Ecto-sp13_S_contig68741.17841.1 vs. uniprot
Match: D7FV68_ECTSI (Probable chromatin remodelling complex ATPase chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV68_ECTSI)

HSP 1 Score: 216 bits (551), Expect = 4.060e-63
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 0

Query:    5 ETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGVSGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTR 105
            ETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKG+SGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTR
Sbjct:  246 ETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTR 346

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BLAST of mRNA_Ecto-sp13_S_contig68741.17841.1 vs. uniprot
Match: A0A835YGX5_9STRA (Putative chromatin remodelling complex ATPase chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGX5_9STRA)

HSP 1 Score: 184 bits (466), Expect = 1.150e-51
Identity = 82/99 (82.83%), Postives = 90/99 (90.91%), Query Frame = 0

Query:    7 TFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGVSGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTR 105
            TFLT QP CI FGK+RHYQLEGLNWMIRLN NGINGILADEMGLGKTLQSIS+LAYM+E+KG+ GPHI+LVPKSTLSNW+NE  RWCP LR +RFHGTR
Sbjct:  271 TFLTAQPACITFGKLRHYQLEGLNWMIRLNANGINGILADEMGLGKTLQSISILAYMYEHKGIRGPHIVLVPKSTLSNWMNEFARWCPVLRAIRFHGTR 369

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BLAST of mRNA_Ecto-sp13_S_contig68741.17841.1 vs. uniprot
Match: A0A7S3UY81_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UY81_HETAK)

HSP 1 Score: 163 bits (413), Expect = 2.560e-50
Identity = 74/96 (77.08%), Postives = 85/96 (88.54%), Query Frame = 0

Query:    7 TFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGVSGPHIILVPKSTLSNWLNELKRWCPALRPLRFH 102
            TFL  QP CI+ G MR YQLEGLNWMIRL +NGINGILADEMGLGKTLQSIS+LAYM EYK V+GPH++L+PKSTLSNW+NE KR+CPA+R +RFH
Sbjct:   11 TFLLTQPACIQHGTMRPYQLEGLNWMIRLQENGINGILADEMGLGKTLQSISILAYMREYKNVTGPHLVLLPKSTLSNWMNEFKRFCPAIRVVRFH 106

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BLAST of mRNA_Ecto-sp13_S_contig68741.17841.1 vs. uniprot
Match: A0A7S2HGM0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HGM0_9STRA)

HSP 1 Score: 175 bits (443), Expect = 8.520e-50
Identity = 79/101 (78.22%), Postives = 86/101 (85.15%), Query Frame = 0

Query:    5 ETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGVSGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTR 105
            E T+L  QP CIKFGKMR YQLEGLNWMIRL +NG+NGILADEMGLGKTLQSIS+L Y  EY  V GPH+ILVPKSTLSNW+NE KRWCP L PLRFHGT+
Sbjct:  190 EPTYLAIQPSCIKFGKMRPYQLEGLNWMIRLQENGVNGILADEMGLGKTLQSISILGYTAEYTDVRGPHLILVPKSTLSNWMNEFKRWCPMLNPLRFHGTK 290

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BLAST of mRNA_Ecto-sp13_S_contig68741.17841.1 vs. uniprot
Match: A0A7S3UXF4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXF4_HETAK)

HSP 1 Score: 162 bits (409), Expect = 5.650e-49
Identity = 71/99 (71.72%), Postives = 83/99 (83.84%), Query Frame = 0

Query:    7 TFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGVSGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTR 105
            TFL  QP CI+ G MR YQLEGLNWMIRL +NGINGILADEMGLGKTLQSIS+L Y  EY+ + GPHI+LVPKSTLSNW+NE +RWCP +R ++FHG +
Sbjct:   11 TFLLTQPACIQHGTMRPYQLEGLNWMIRLQENGINGILADEMGLGKTLQSISILGYTMEYRSIRGPHIVLVPKSTLSNWMNEFQRWCPDIRAIKFHGNK 109

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BLAST of mRNA_Ecto-sp13_S_contig68741.17841.1 vs. uniprot
Match: A0A8J9S4J9_PHATR (Hypothetical protein (Fragment) n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S4J9_PHATR)

HSP 1 Score: 158 bits (400), Expect = 9.840e-47
Identity = 71/98 (72.45%), Postives = 84/98 (85.71%), Query Frame = 0

Query:    8 FLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGVSGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTR 105
            FLTKQP  IKFG ++ YQLE LNWMI L++ G+NGILADEMGLGKTLQSISVLAY  E+  + GPH+I VPKSTLSNW+NELKRWCP+LR ++FHG+R
Sbjct:   28 FLTKQPTSIKFGTLKPYQLEALNWMIHLSEKGLNGILADEMGLGKTLQSISVLAYHWEFLRIQGPHLICVPKSTLSNWMNELKRWCPSLRAIKFHGSR 125

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BLAST of mRNA_Ecto-sp13_S_contig68741.17841.1 vs. uniprot
Match: A0A7S2LA35_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LA35_9STRA)

HSP 1 Score: 159 bits (401), Expect = 1.130e-46
Identity = 73/105 (69.52%), Postives = 85/105 (80.95%), Query Frame = 0

Query:    5 ETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYK----GVSGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTR 105
            E TFLT QP  + FGKMR YQLEGLNWMIRL ++G+NGILADEMGLGKTLQSIS+L YM EY     G +GPH+I+VPKSTLSNW+NEL RW P L+ +RFHG +
Sbjct:   73 EATFLTAQPSTLGFGKMRPYQLEGLNWMIRLQEHGVNGILADEMGLGKTLQSISILVYMKEYASEEDGATGPHLIVVPKSTLSNWMNELNRWAPTLKAVRFHGNK 177

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BLAST of mRNA_Ecto-sp13_S_contig68741.17841.1 vs. uniprot
Match: A0A7S1BNI0_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BNI0_9STRA)

HSP 1 Score: 168 bits (426), Expect = 1.160e-46
Identity = 76/99 (76.77%), Postives = 87/99 (87.88%), Query Frame = 0

Query:    7 TFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGVSGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTR 105
            TFLTKQP+CI+FG ++ YQLEGLNWMI L + GINGILADEMGLGKTLQSISVLAY  EY  + GPH+I VPKSTLSNW+NELKRWCP+LR +RFHG+R
Sbjct:  127 TFLTKQPNCIEFGTLKPYQLEGLNWMIHLQEKGINGILADEMGLGKTLQSISVLAYNLEYLNLQGPHLIAVPKSTLSNWMNELKRWCPSLRAIRFHGSR 225

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BLAST of mRNA_Ecto-sp13_S_contig68741.17841.1 vs. uniprot
Match: A0A7S2AX79_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2AX79_9CHLO)

HSP 1 Score: 159 bits (402), Expect = 2.140e-46
Identity = 67/86 (77.91%), Postives = 80/86 (93.02%), Query Frame = 0

Query:   19 GKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGVSGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGT 104
            GKMR YQL+GLNWMI L DNGINGILADEMGLGKTLQSIS+L Y+HEY+G++GPH+I+VPKSTLSNW+NE++RWCP LRP++FHG 
Sbjct:    4 GKMREYQLQGLNWMIHLYDNGINGILADEMGLGKTLQSISLLGYLHEYRGITGPHLIIVPKSTLSNWMNEVRRWCPVLRPIKFHGN 89

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig68741.17841.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig68741.17841.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5LCC1_9PHAE	1.990e-70	100.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FV68_ECTSI	4.060e-63	99.01	Probable chromatin remodelling complex ATPase chai...	[more]
A0A835YGX5_9STRA	1.150e-51	82.83	Putative chromatin remodelling complex ATPase chai...	[more]
A0A7S3UY81_HETAK	2.560e-50	77.08	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A7S2HGM0_9STRA	8.520e-50	78.22	Hypothetical protein (Fragment) n=1 Tax=Dictyocha ...	[more]
A0A7S3UXF4_HETAK	5.650e-49	71.72	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A8J9S4J9_PHATR	9.840e-47	72.45	Hypothetical protein (Fragment) n=3 Tax=Phaeodacty...	[more]
A0A7S2LA35_9STRA	1.130e-46	69.52	Hypothetical protein (Fragment) n=1 Tax=Leptocylin...	[more]
A0A7S1BNI0_9STRA	1.160e-46	76.77	Hypothetical protein n=1 Tax=Corethron hystrix Tax...	[more]
A0A7S2AX79_9CHLO	2.140e-46	77.91	Hypothetical protein (Fragment) n=1 Tax=Pycnococcu...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000330	SNF2-related, N-terminal domain	PFAM	PF00176	SNF2_N	coord: 36..96 e-value: 2.3E-16 score: 59.5
IPR038718	SNF2-like, N-terminal domain superfamily	GENE3D	3.40.50.10810		coord: 1..108 e-value: 1.5E-39 score: 137.5
None	No IPR available	PANTHER	PTHR10799:SF979		coord: 3..105
None	No IPR available	PANTHER	PTHR10799	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED	coord: 3..105
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 33..108 score: 10.295
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 6..104

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig68741	contig	Ecto-sp13_S_contig68741:6..670 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig68741.17841.1	mRNA_Ecto-sp13_S_contig68741.17841.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig68741 6..670 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig68741.17841.1 ID=prot_Ecto-sp13_S_contig68741.17841.1|Name=mRNA_Ecto-sp13_S_contig68741.17841.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp
MKNRETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGL
GKTLQSISVLAYMHEYKGVSGPHIILVPKSTLSNWLNELKRWCPALRPLR
FHGTRASF*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000330	SNF2_N
IPR038718	SNF2-like_sf
IPR014001	Helicase_ATP-bd
IPR027417	P-loop_NTPase