mRNA_Ecto-sp13_S_contig68741.17841.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig68741.17841.1
Unique Name	mRNA_Ecto-sp13_S_contig68741.17841.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig68741.17841.1 vs. uniprot
Match: A0A6H5LCC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCC1_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 1.990e-70
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1

Query:   13 ETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGVSGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTRASF 324
            ETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGVSGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTRASF
Sbjct:  249 ETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGVSGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTRASF 352

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BLAST of mRNA_Ecto-sp13_S_contig68741.17841.1 vs. uniprot
Match: D7FV68_ECTSI (Probable chromatin remodelling complex ATPase chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV68_ECTSI)

HSP 1 Score: 216 bits (551), Expect = 4.060e-63
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 1

Query:   13 ETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGVSGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTR 315
            ETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKG+SGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTR
Sbjct:  246 ETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTR 346

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BLAST of mRNA_Ecto-sp13_S_contig68741.17841.1 vs. uniprot
Match: A0A835YGX5_9STRA (Putative chromatin remodelling complex ATPase chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGX5_9STRA)

HSP 1 Score: 184 bits (466), Expect = 1.150e-51
Identity = 82/99 (82.83%), Postives = 90/99 (90.91%), Query Frame = 1

Query:   19 TFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGVSGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTR 315
            TFLT QP CI FGK+RHYQLEGLNWMIRLN NGINGILADEMGLGKTLQSIS+LAYM+E+KG+ GPHI+LVPKSTLSNW+NE  RWCP LR +RFHGTR
Sbjct:  271 TFLTAQPACITFGKLRHYQLEGLNWMIRLNANGINGILADEMGLGKTLQSISILAYMYEHKGIRGPHIVLVPKSTLSNWMNEFARWCPVLRAIRFHGTR 369

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BLAST of mRNA_Ecto-sp13_S_contig68741.17841.1 vs. uniprot
Match: A0A7S3UY81_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UY81_HETAK)

HSP 1 Score: 163 bits (413), Expect = 2.560e-50
Identity = 74/96 (77.08%), Postives = 85/96 (88.54%), Query Frame = 1

Query:   19 TFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGVSGPHIILVPKSTLSNWLNELKRWCPALRPLRFH 306
            TFL  QP CI+ G MR YQLEGLNWMIRL +NGINGILADEMGLGKTLQSIS+LAYM EYK V+GPH++L+PKSTLSNW+NE KR+CPA+R +RFH
Sbjct:   11 TFLLTQPACIQHGTMRPYQLEGLNWMIRLQENGINGILADEMGLGKTLQSISILAYMREYKNVTGPHLVLLPKSTLSNWMNEFKRFCPAIRVVRFH 106

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BLAST of mRNA_Ecto-sp13_S_contig68741.17841.1 vs. uniprot
Match: A0A7S2HGM0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HGM0_9STRA)

HSP 1 Score: 175 bits (443), Expect = 8.520e-50
Identity = 79/101 (78.22%), Postives = 86/101 (85.15%), Query Frame = 1

Query:   13 ETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGVSGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTR 315
            E T+L  QP CIKFGKMR YQLEGLNWMIRL +NG+NGILADEMGLGKTLQSIS+L Y  EY  V GPH+ILVPKSTLSNW+NE KRWCP L PLRFHGT+
Sbjct:  190 EPTYLAIQPSCIKFGKMRPYQLEGLNWMIRLQENGVNGILADEMGLGKTLQSISILGYTAEYTDVRGPHLILVPKSTLSNWMNEFKRWCPMLNPLRFHGTK 290

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BLAST of mRNA_Ecto-sp13_S_contig68741.17841.1 vs. uniprot
Match: A0A7S3UXF4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXF4_HETAK)

HSP 1 Score: 162 bits (409), Expect = 5.650e-49
Identity = 71/99 (71.72%), Postives = 83/99 (83.84%), Query Frame = 1

Query:   19 TFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGVSGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTR 315
            TFL  QP CI+ G MR YQLEGLNWMIRL +NGINGILADEMGLGKTLQSIS+L Y  EY+ + GPHI+LVPKSTLSNW+NE +RWCP +R ++FHG +
Sbjct:   11 TFLLTQPACIQHGTMRPYQLEGLNWMIRLQENGINGILADEMGLGKTLQSISILGYTMEYRSIRGPHIVLVPKSTLSNWMNEFQRWCPDIRAIKFHGNK 109

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BLAST of mRNA_Ecto-sp13_S_contig68741.17841.1 vs. uniprot
Match: A0A8J9S4J9_PHATR (Hypothetical protein (Fragment) n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S4J9_PHATR)

HSP 1 Score: 158 bits (400), Expect = 9.840e-47
Identity = 71/98 (72.45%), Postives = 84/98 (85.71%), Query Frame = 1

Query:   22 FLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGVSGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTR 315
            FLTKQP  IKFG ++ YQLE LNWMI L++ G+NGILADEMGLGKTLQSISVLAY  E+  + GPH+I VPKSTLSNW+NELKRWCP+LR ++FHG+R
Sbjct:   28 FLTKQPTSIKFGTLKPYQLEALNWMIHLSEKGLNGILADEMGLGKTLQSISVLAYHWEFLRIQGPHLICVPKSTLSNWMNELKRWCPSLRAIKFHGSR 125

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BLAST of mRNA_Ecto-sp13_S_contig68741.17841.1 vs. uniprot
Match: A0A7S2LA35_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LA35_9STRA)

HSP 1 Score: 159 bits (401), Expect = 1.130e-46
Identity = 73/105 (69.52%), Postives = 85/105 (80.95%), Query Frame = 1

Query:   13 ETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYK----GVSGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTR 315
            E TFLT QP  + FGKMR YQLEGLNWMIRL ++G+NGILADEMGLGKTLQSIS+L YM EY     G +GPH+I+VPKSTLSNW+NEL RW P L+ +RFHG +
Sbjct:   73 EATFLTAQPSTLGFGKMRPYQLEGLNWMIRLQEHGVNGILADEMGLGKTLQSISILVYMKEYASEEDGATGPHLIVVPKSTLSNWMNELNRWAPTLKAVRFHGNK 177

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BLAST of mRNA_Ecto-sp13_S_contig68741.17841.1 vs. uniprot
Match: A0A7S1BNI0_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BNI0_9STRA)

HSP 1 Score: 168 bits (426), Expect = 1.160e-46
Identity = 76/99 (76.77%), Postives = 87/99 (87.88%), Query Frame = 1

Query:   19 TFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGVSGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTR 315
            TFLTKQP+CI+FG ++ YQLEGLNWMI L + GINGILADEMGLGKTLQSISVLAY  EY  + GPH+I VPKSTLSNW+NELKRWCP+LR +RFHG+R
Sbjct:  127 TFLTKQPNCIEFGTLKPYQLEGLNWMIHLQEKGINGILADEMGLGKTLQSISVLAYNLEYLNLQGPHLIAVPKSTLSNWMNELKRWCPSLRAIRFHGSR 225

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BLAST of mRNA_Ecto-sp13_S_contig68741.17841.1 vs. uniprot
Match: A0A7S2AX79_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2AX79_9CHLO)

HSP 1 Score: 159 bits (402), Expect = 2.140e-46
Identity = 67/86 (77.91%), Postives = 80/86 (93.02%), Query Frame = 1

Query:   55 GKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGVSGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGT 312
            GKMR YQL+GLNWMI L DNGINGILADEMGLGKTLQSIS+L Y+HEY+G++GPH+I+VPKSTLSNW+NE++RWCP LRP++FHG 
Sbjct:    4 GKMREYQLQGLNWMIHLYDNGINGILADEMGLGKTLQSISLLGYLHEYRGITGPHLIIVPKSTLSNWMNEVRRWCPVLRPIKFHGN 89

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig68741.17841.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig68741.17841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5LCC1_9PHAE	1.990e-70	100.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FV68_ECTSI	4.060e-63	99.01	Probable chromatin remodelling complex ATPase chai...	[more]
A0A835YGX5_9STRA	1.150e-51	82.83	Putative chromatin remodelling complex ATPase chai...	[more]
A0A7S3UY81_HETAK	2.560e-50	77.08	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A7S2HGM0_9STRA	8.520e-50	78.22	Hypothetical protein (Fragment) n=1 Tax=Dictyocha ...	[more]
A0A7S3UXF4_HETAK	5.650e-49	71.72	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A8J9S4J9_PHATR	9.840e-47	72.45	Hypothetical protein (Fragment) n=3 Tax=Phaeodacty...	[more]
A0A7S2LA35_9STRA	1.130e-46	69.52	Hypothetical protein (Fragment) n=1 Tax=Leptocylin...	[more]
A0A7S1BNI0_9STRA	1.160e-46	76.77	Hypothetical protein n=1 Tax=Corethron hystrix Tax...	[more]
A0A7S2AX79_9CHLO	2.140e-46	77.91	Hypothetical protein (Fragment) n=1 Tax=Pycnococcu...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig68741	contig	Ecto-sp13_S_contig68741:6..670 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	217.2
Seed ortholog evalue	3.7e-54
Seed eggNOG ortholog	2880.D7FV68
Model size	327
KEGG ko	ko:K11654
Hectar predicted targeting category	other localisation
Exons	2
EggNOG free text desc.	helicase activity
EggNOG OGs	COG0553@1,KOG0385@2759
Cds size	327
COG Functional cat.	KL
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko01000,ko03021,ko03036

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463943.908143-CDS-Ecto-sp13_S_contig68741:5..129	1681463943.908143-CDS-Ecto-sp13_S_contig68741:5..129	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig68741 6..129 +
1681463943.919175-CDS-Ecto-sp13_S_contig68741:467..670	1681463943.919175-CDS-Ecto-sp13_S_contig68741:467..670	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig68741 468..670 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig68741.17841.1	prot_Ecto-sp13_S_contig68741.17841.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig68741 6..670 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig68741:6..670+
coding sequence from alignment at Ecto-sp13_S_contig68741:6..670+

protein sequence of mRNA_Ecto-sp13_S_contig68741.17841.1

>prot_Ecto-sp13_S_contig68741.17841.1 ID=prot_Ecto-sp13_S_contig68741.17841.1|Name=mRNA_Ecto-sp13_S_contig68741.17841.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp
MKNRETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGL
GKTLQSISVLAYMHEYKGVSGPHIILVPKSTLSNWLNELKRWCPALRPLR
FHGTRASF*

mRNA from alignment at Ecto-sp13_S_contig68741:6..670+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig68741.17841.1 ID=mRNA_Ecto-sp13_S_contig68741.17841.1|Name=mRNA_Ecto-sp13_S_contig68741.17841.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=665bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68741:6..670+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAAAATAGGGAGACTACTTTCCTGACCAAGCAGCCGGACTGCATCAA
GTTCGGGAAGATGAGGCACTACCAGCTGGAAGGCCTAAACTGGATGATTC
GCCTCAACGATAACGGCATCAACGGTAGGAAGAGTAGTGTTGATCCACCA
AGGGGCTGAGTTCGACGGTACTCATGTCACGCCGGTGTCGCATAGAGGCT
GAAGAAAGTTGCTGGTTTTTGATCGAGTCAGATTACTTCGCTGATCTGGC
GCGTGTTGGCATGTTGTGGCATGGACTACACTTCCGTCAAAAACGAACTA
GTAGAAAAGACGGAGAGCAGCATGTATACGTGCGTGAGAAGAAACGACCT
CTGATGCGCAGCAGCCGCACCTGAGGGATTGCGTGAGTGCGTCGTTTGTG
TTTAGCGTAACACCCGATGACAACCTTGACGTGATGTGCTCCCCTCCCTC
GAATCGCGCCAGGTATCCTCGCGGACGAGATGGGTCTGGGCAAGACCCTG
CAGAGCATCAGCGTTCTGGCCTACATGCACGAGTATAAGGGCGTCAGCGG
TCCGCACATCATCCTCGTGCCCAAGAGCACGCTGTCCAACTGGCTCAACG
AGCTCAAGCGCTGGTGCCCCGCCCTCCGCCCCCTCCGGTTCCACGGCACG
CGGGCGAGTTTTTGA

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig68741:6..670+

>mRNA_Ecto-sp13_S_contig68741.17841.1 ID=mRNA_Ecto-sp13_S_contig68741.17841.1|Name=mRNA_Ecto-sp13_S_contig68741.17841.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68741:6..670+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAAAATAGGGAGACTACTTTCCTGACCAAGCAGCCGGACTGCATCAA
GTTCGGGAAGATGAGGCACTACCAGCTGGAAGGCCTAAACTGGATGATTC
GCCTCAACGATAACGGCATCAACGGTATCCTCGCGGACGAGATGGGTCTG
GGCAAGACCCTGCAGAGCATCAGCGTTCTGGCCTACATGCACGAGTATAA
GGGCGTCAGCGGTCCGCACATCATCCTCGTGCCCAAGAGCACGCTGTCCA
ACTGGCTCAACGAGCTCAAGCGCTGGTGCCCCGCCCTCCGCCCCCTCCGG
TTCCACGGCACGCGGGCGAGTTTTTGA