mRNA_Ecto-sp13_S_contig6868.17832.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6868.17832.1 vs. uniprot
Match: D7G2R6_ECTSI (Derlin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R6_ECTSI) HSP 1 Score: 256 bits (655), Expect = 7.550e-80 Identity = 166/224 (74.11%), Postives = 171/224 (76.34%), Query Frame = 1
Query: 1 QVNMLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGILIGYAWQTLSLKGLLKAPKPLVNLFRNNAFLRAEYAKAGKEYGQDVPLHDGDHXXXXXXXXXATLDEASEGTKKGEAVGKKDKGAGKRAA-APTDREASSDAARKTARGEXXXXXXKPVPDEEDSDDSGTEESQAAEGERGGEYASXXXSEELADVKEFDEEAESMLEEFEGDLDTSQDFSDSYEE 669
+VNMLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGILIGYAWQTLSLKGLLKAPKPLVNLFRNNAFLRAEYAKAGKEYGQDVPLHD D XXX ATLDEASEG+KKGEA G+ KGA A TDR+ASSDAARK ARGE XXXX XXX EELADVKEFDEEAESMLEEFEGDLDT+QDFSDS EE
Sbjct: 264 RVNMLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGILIGYAWQTLSLKGLLKAPKPLVNLFRNNAFLRAEYAKAGKEYGQDVPLHDDDDDHEEXXXSDATLDEASEGSKKGEAAGRTGKGAAXXXXXAATDRQASSDAARKAARGEGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEELADVKEFDEEAESMLEEFEGDLDTAQDFSDSSEE 487
BLAST of mRNA_Ecto-sp13_S_contig6868.17832.1 vs. uniprot
Match: A0A836CBA0_9STRA (Derlin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBA0_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 5.430e-12 Identity = 36/81 (44.44%), Postives = 56/81 (69.14%), Query Frame = 1
Query: 1 QVNMLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGILIGYAWQTLSLKGLLKAPKPLVNLFRNNAFLRAEYAKAGKEYG 243
+VN+ DMF L ELLP+FFVAQTL++EG +P +DL GI +GY + L ++ L+KAP+ + F+ A + +Y + +E+G
Sbjct: 174 EVNVNDMFSLKAELLPWFFVAQTLVLEGEVPLLDLLGIFVGYLYMQLKIRKLIKAPEFVTQFFKLPAIAK-DYKRFEREFG 253
BLAST of mRNA_Ecto-sp13_S_contig6868.17832.1 vs. uniprot
Match: F0YAW8_AURAN (Derlin n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAW8_AURAN) HSP 1 Score: 67.4 bits (163), Expect = 1.430e-9 Identity = 33/81 (40.74%), Postives = 51/81 (62.96%), Query Frame = 1
Query: 1 QVNMLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGILIGYAWQTLSLKGLLKAPKPLVNLFRNNAFLRAEYAKAGKEYG 243
+V++++ F + ELLP+FF AQT ++E +P DL GI IG+ + + +L APKPL +LF +N L A Y +E+G
Sbjct: 239 EVSVMEFFNIKAELLPWFFAAQTYLLEHELPIHDLLGIAIGHLYTVARQRKILGAPKPLQDLFTSNPALMARYEAMAEEFG 319
BLAST of mRNA_Ecto-sp13_S_contig6868.17832.1 vs. uniprot
Match: A0A0G4GDN6_VITBC (Derlin n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GDN6_VITBC) HSP 1 Score: 66.2 bits (160), Expect = 4.040e-9 Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 1
Query: 4 VNMLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGILIGYAWQTLSLKGLLKAPKPLVNLFRNNAFLRAEYAKAGKEY 240
VN++D+F+L E LP+FFV QT ++EG P DL GI G+ + L + LK+P PL +LFR L+ +Y K KE+
Sbjct: 264 VNIMDLFQLRAEYLPWFFVMQTWLLEGQAPTFDLLGIAFGWLYHWLKSRHWLKSPPPLKDLFRQPV-LKRQYEKYEKEF 341
BLAST of mRNA_Ecto-sp13_S_contig6868.17832.1 vs. uniprot
Match: A0A7S2Y3M2_9STRA (Derlin n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3M2_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.330e-8 Identity = 32/80 (40.00%), Postives = 53/80 (66.25%), Query Frame = 1
Query: 4 VNMLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGILIGYAWQTLSLKGLLKAPKPLVNLFRNNAFLRAEYAKAGKEYG 243
VN++D+F + ELLP+FFVAQTL++ G +P D+ GI G+ + L+LK + AP+ L +F ++ ++ Y + +EYG
Sbjct: 256 VNVMDLFHMSAELLPWFFVAQTLVLTGELPIADIIGIAAGHMYHYLNLKKMTSAPEFLQRIFEIDS-IKMRYERYEEEYG 334
BLAST of mRNA_Ecto-sp13_S_contig6868.17832.1 vs. uniprot
Match: A0A6V1KE03_HETAK (Derlin n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KE03_HETAK) HSP 1 Score: 62.0 bits (149), Expect = 1.130e-7 Identity = 32/80 (40.00%), Postives = 53/80 (66.25%), Query Frame = 1
Query: 4 VNMLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGILIGYAWQTLSLKGLLKAPKPLVNLFRNNAFLRAEYAKAGKEYG 243
V + D FE+ L+P+FF Q ++MEG+IP+ D+ GILIG+A+ L K LL AP + ++F++ L+++Y +E+G
Sbjct: 248 VLLFDFFEMKAVLMPWFFALQPMIMEGMIPYPDILGILIGHAYYYLKTKKLLVAPAFIKSIFQH-PILKSKYLVFEEEFG 326
BLAST of mRNA_Ecto-sp13_S_contig6868.17832.1 vs. uniprot
Match: A0A7S0FH20_9STRA (Derlin n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FH20_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 3.250e-7 Identity = 28/67 (41.79%), Postives = 44/67 (65.67%), Query Frame = 1
Query: 1 QVNMLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGILIGYAWQTLSLKGLLKAPKPLVNLFRNNA 201
+VNM ++F E+LP+ F+AQT ++EGV P +DL GIL G+ + L LKAPK ++N + ++
Sbjct: 307 EVNMFELFTARAEMLPWLFLAQTFLLEGVFPTLDLLGILFGHIYHHLWTTNALKAPKFIINWYNGDS 373
BLAST of mRNA_Ecto-sp13_S_contig6868.17832.1 vs. uniprot
Match: A0A7S0C2M9_9STRA (Derlin n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C2M9_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 5.070e-7 Identity = 28/86 (32.56%), Postives = 48/86 (55.81%), Query Frame = 1
Query: 1 QVNMLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGILIGYAWQTLSLKGLLKAPKPLVNLFRNNAFLRAEYAKAGKEYGQDVPL 258
+VN++++F E+LP+FF+AQT ++EG +P +DL GIL G+ + +LK P+ +VN + + KE D +
Sbjct: 99 EVNLMELFNARAEMLPWFFLAQTALLEGELPILDLLGILFGHIYHHCKTTQVLKTPQFIVNWYNGSGPYSTAIRNKYKEISSDFEI 184
BLAST of mRNA_Ecto-sp13_S_contig6868.17832.1 vs. uniprot
Match: A0A0P0YV70_9STRA (Derlin n=1 Tax=Nitzschia sp. IriIs04 TaxID=1444690 RepID=A0A0P0YV70_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 8.060e-7 Identity = 34/93 (36.56%), Postives = 55/93 (59.14%), Query Frame = 1
Query: 4 VNMLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGILIGYAWQTLSLKGLLKAPKPLVNLFRNNAF---LRAEYAKAGKEYGQDVPLHDGDH 273
V+M ++F ELLP+FFVAQT ++EG P +D+ GI+ G+ + GLL+AP LV+ + + +R +Y K+ D L++G+H
Sbjct: 267 VDMFELFTARAELLPWFFVAQTYLLEGAPPIMDILGIVFGHVYFHCKSTGLLRAPDALVDWYVTSESAKPIRQQY----KQISSDFELNNGNH 355
BLAST of mRNA_Ecto-sp13_S_contig6868.17832.1 vs. uniprot
Match: A0A7S2XRP1_9STRA (Derlin n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XRP1_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 1.110e-6 Identity = 26/86 (30.23%), Postives = 47/86 (54.65%), Query Frame = 1
Query: 1 QVNMLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGILIGYAWQTLSLKGLLKAPKPLVNLFRNNAFLRAEYAKAGKEYGQDVPL 258
+VNM ++F E+LP+FF+AQT ++EG P +DL GI+ G+ + +L+ P+ +++ + ++ K K D L
Sbjct: 36 EVNMFELFNTRAEMLPWFFLAQTFLLEGEFPVLDLLGIVFGHIYHHCKTTNILRTPQFIIDWYNSDGRFSTVLRKQYKAISSDFEL 121 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6868.17832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6868.17832.1 >prot_Ecto-sp13_S_contig6868.17832.1 ID=prot_Ecto-sp13_S_contig6868.17832.1|Name=mRNA_Ecto-sp13_S_contig6868.17832.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=230bp MLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGILIGYAWQTLSLKGLLback to top mRNA from alignment at Ecto-sp13_S_contig6868:6487..7539- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6868.17832.1 ID=mRNA_Ecto-sp13_S_contig6868.17832.1|Name=mRNA_Ecto-sp13_S_contig6868.17832.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1053bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6868:6487..7539- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6868:6487..7539- >mRNA_Ecto-sp13_S_contig6868.17832.1 ID=mRNA_Ecto-sp13_S_contig6868.17832.1|Name=mRNA_Ecto-sp13_S_contig6868.17832.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=690bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6868:6487..7539- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |