mRNA_Ecto-sp13_S_contig6868.17832.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6868.17832.1
Unique NamemRNA_Ecto-sp13_S_contig6868.17832.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6868.17832.1 vs. uniprot
Match: D7G2R6_ECTSI (Derlin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R6_ECTSI)

HSP 1 Score: 256 bits (655), Expect = 7.550e-80
Identity = 166/224 (74.11%), Postives = 171/224 (76.34%), Query Frame = 1
Query:    1 QVNMLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGILIGYAWQTLSLKGLLKAPKPLVNLFRNNAFLRAEYAKAGKEYGQDVPLHDGDHXXXXXXXXXATLDEASEGTKKGEAVGKKDKGAGKRAA-APTDREASSDAARKTARGEXXXXXXKPVPDEEDSDDSGTEESQAAEGERGGEYASXXXSEELADVKEFDEEAESMLEEFEGDLDTSQDFSDSYEE 669
            +VNMLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGILIGYAWQTLSLKGLLKAPKPLVNLFRNNAFLRAEYAKAGKEYGQDVPLHD D     XXX  ATLDEASEG+KKGEA G+  KGA      A TDR+ASSDAARK ARGE  XXXX                              XXX EELADVKEFDEEAESMLEEFEGDLDT+QDFSDS EE
Sbjct:  264 RVNMLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGILIGYAWQTLSLKGLLKAPKPLVNLFRNNAFLRAEYAKAGKEYGQDVPLHDDDDDHEEXXXSDATLDEASEGSKKGEAAGRTGKGAAXXXXXAATDRQASSDAARKAARGEGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEELADVKEFDEEAESMLEEFEGDLDTAQDFSDSSEE 487          
BLAST of mRNA_Ecto-sp13_S_contig6868.17832.1 vs. uniprot
Match: A0A836CBA0_9STRA (Derlin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBA0_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 5.430e-12
Identity = 36/81 (44.44%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    1 QVNMLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGILIGYAWQTLSLKGLLKAPKPLVNLFRNNAFLRAEYAKAGKEYG 243
            +VN+ DMF L  ELLP+FFVAQTL++EG +P +DL GI +GY +  L ++ L+KAP+ +   F+  A  + +Y +  +E+G
Sbjct:  174 EVNVNDMFSLKAELLPWFFVAQTLVLEGEVPLLDLLGIFVGYLYMQLKIRKLIKAPEFVTQFFKLPAIAK-DYKRFEREFG 253          
BLAST of mRNA_Ecto-sp13_S_contig6868.17832.1 vs. uniprot
Match: F0YAW8_AURAN (Derlin n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAW8_AURAN)

HSP 1 Score: 67.4 bits (163), Expect = 1.430e-9
Identity = 33/81 (40.74%), Postives = 51/81 (62.96%), Query Frame = 1
Query:    1 QVNMLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGILIGYAWQTLSLKGLLKAPKPLVNLFRNNAFLRAEYAKAGKEYG 243
            +V++++ F +  ELLP+FF AQT ++E  +P  DL GI IG+ +     + +L APKPL +LF +N  L A Y    +E+G
Sbjct:  239 EVSVMEFFNIKAELLPWFFAAQTYLLEHELPIHDLLGIAIGHLYTVARQRKILGAPKPLQDLFTSNPALMARYEAMAEEFG 319          
BLAST of mRNA_Ecto-sp13_S_contig6868.17832.1 vs. uniprot
Match: A0A0G4GDN6_VITBC (Derlin n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GDN6_VITBC)

HSP 1 Score: 66.2 bits (160), Expect = 4.040e-9
Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 1
Query:    4 VNMLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGILIGYAWQTLSLKGLLKAPKPLVNLFRNNAFLRAEYAKAGKEY 240
            VN++D+F+L  E LP+FFV QT ++EG  P  DL GI  G+ +  L  +  LK+P PL +LFR    L+ +Y K  KE+
Sbjct:  264 VNIMDLFQLRAEYLPWFFVMQTWLLEGQAPTFDLLGIAFGWLYHWLKSRHWLKSPPPLKDLFRQPV-LKRQYEKYEKEF 341          
BLAST of mRNA_Ecto-sp13_S_contig6868.17832.1 vs. uniprot
Match: A0A7S2Y3M2_9STRA (Derlin n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3M2_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.330e-8
Identity = 32/80 (40.00%), Postives = 53/80 (66.25%), Query Frame = 1
Query:    4 VNMLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGILIGYAWQTLSLKGLLKAPKPLVNLFRNNAFLRAEYAKAGKEYG 243
            VN++D+F +  ELLP+FFVAQTL++ G +P  D+ GI  G+ +  L+LK +  AP+ L  +F  ++ ++  Y +  +EYG
Sbjct:  256 VNVMDLFHMSAELLPWFFVAQTLVLTGELPIADIIGIAAGHMYHYLNLKKMTSAPEFLQRIFEIDS-IKMRYERYEEEYG 334          
BLAST of mRNA_Ecto-sp13_S_contig6868.17832.1 vs. uniprot
Match: A0A6V1KE03_HETAK (Derlin n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KE03_HETAK)

HSP 1 Score: 62.0 bits (149), Expect = 1.130e-7
Identity = 32/80 (40.00%), Postives = 53/80 (66.25%), Query Frame = 1
Query:    4 VNMLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGILIGYAWQTLSLKGLLKAPKPLVNLFRNNAFLRAEYAKAGKEYG 243
            V + D FE+   L+P+FF  Q ++MEG+IP+ D+ GILIG+A+  L  K LL AP  + ++F++   L+++Y    +E+G
Sbjct:  248 VLLFDFFEMKAVLMPWFFALQPMIMEGMIPYPDILGILIGHAYYYLKTKKLLVAPAFIKSIFQH-PILKSKYLVFEEEFG 326          
BLAST of mRNA_Ecto-sp13_S_contig6868.17832.1 vs. uniprot
Match: A0A7S0FH20_9STRA (Derlin n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FH20_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 3.250e-7
Identity = 28/67 (41.79%), Postives = 44/67 (65.67%), Query Frame = 1
Query:    1 QVNMLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGILIGYAWQTLSLKGLLKAPKPLVNLFRNNA 201
            +VNM ++F    E+LP+ F+AQT ++EGV P +DL GIL G+ +  L     LKAPK ++N +  ++
Sbjct:  307 EVNMFELFTARAEMLPWLFLAQTFLLEGVFPTLDLLGILFGHIYHHLWTTNALKAPKFIINWYNGDS 373          
BLAST of mRNA_Ecto-sp13_S_contig6868.17832.1 vs. uniprot
Match: A0A7S0C2M9_9STRA (Derlin n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C2M9_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 5.070e-7
Identity = 28/86 (32.56%), Postives = 48/86 (55.81%), Query Frame = 1
Query:    1 QVNMLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGILIGYAWQTLSLKGLLKAPKPLVNLFRNNAFLRAEYAKAGKEYGQDVPL 258
            +VN++++F    E+LP+FF+AQT ++EG +P +DL GIL G+ +       +LK P+ +VN +  +           KE   D  +
Sbjct:   99 EVNLMELFNARAEMLPWFFLAQTALLEGELPILDLLGILFGHIYHHCKTTQVLKTPQFIVNWYNGSGPYSTAIRNKYKEISSDFEI 184          
BLAST of mRNA_Ecto-sp13_S_contig6868.17832.1 vs. uniprot
Match: A0A0P0YV70_9STRA (Derlin n=1 Tax=Nitzschia sp. IriIs04 TaxID=1444690 RepID=A0A0P0YV70_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 8.060e-7
Identity = 34/93 (36.56%), Postives = 55/93 (59.14%), Query Frame = 1
Query:    4 VNMLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGILIGYAWQTLSLKGLLKAPKPLVNLFRNNAF---LRAEYAKAGKEYGQDVPLHDGDH 273
            V+M ++F    ELLP+FFVAQT ++EG  P +D+ GI+ G+ +      GLL+AP  LV+ +  +     +R +Y    K+   D  L++G+H
Sbjct:  267 VDMFELFTARAELLPWFFVAQTYLLEGAPPIMDILGIVFGHVYFHCKSTGLLRAPDALVDWYVTSESAKPIRQQY----KQISSDFELNNGNH 355          
BLAST of mRNA_Ecto-sp13_S_contig6868.17832.1 vs. uniprot
Match: A0A7S2XRP1_9STRA (Derlin n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XRP1_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.110e-6
Identity = 26/86 (30.23%), Postives = 47/86 (54.65%), Query Frame = 1
Query:    1 QVNMLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGILIGYAWQTLSLKGLLKAPKPLVNLFRNNAFLRAEYAKAGKEYGQDVPL 258
            +VNM ++F    E+LP+FF+AQT ++EG  P +DL GI+ G+ +       +L+ P+ +++ + ++        K  K    D  L
Sbjct:   36 EVNMFELFNTRAEMLPWFFLAQTFLLEGEFPVLDLLGIVFGHIYHHCKTTNILRTPQFIIDWYNSDGRFSTVLRKQYKAISSDFEL 121          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6868.17832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7G2R6_ECTSI7.550e-8074.11Derlin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R6_... [more]
A0A836CBA0_9STRA5.430e-1244.44Derlin n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
F0YAW8_AURAN1.430e-940.74Derlin n=1 Tax=Aureococcus anophagefferens TaxID=4... [more]
A0A0G4GDN6_VITBC4.040e-944.30Derlin n=2 Tax=Vitrella brassicaformis TaxID=11695... [more]
A0A7S2Y3M2_9STRA1.330e-840.00Derlin n=1 Tax=Fibrocapsa japonica TaxID=94617 Rep... [more]
A0A6V1KE03_HETAK1.130e-740.00Derlin n=1 Tax=Heterosigma akashiwo TaxID=2829 Rep... [more]
A0A7S0FH20_9STRA3.250e-741.79Derlin n=1 Tax=Minutocellus polymorphus TaxID=2655... [more]
A0A7S0C2M9_9STRA5.070e-732.56Derlin n=1 Tax=Proboscia inermis TaxID=420281 RepI... [more]
A0A0P0YV70_9STRA8.060e-736.56Derlin n=1 Tax=Nitzschia sp. IriIs04 TaxID=1444690... [more]
A0A7S2XRP1_9STRA1.110e-630.23Derlin n=1 Tax=Attheya septentrionalis TaxID=42027... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6868contigEcto-sp13_S_contig6868:6487..7539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score258.8
Seed ortholog evalue2.3e-66
Seed eggNOG ortholog2880.D7G2R6
Model size699
KEGG koko:K13989
KEGG Pathwayko04141,map04141
KEGG ModuleM00403
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.ubiquitin-dependent ERAD pathway
EggNOG OGsCOG5291@1,KOG0858@2759
Cds size690
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463942.9978023-CDS-Ecto-sp13_S_contig6868:6486..70501681463942.9978023-CDS-Ecto-sp13_S_contig6868:6486..7050Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6868 6487..7050 -
1681463943.013692-CDS-Ecto-sp13_S_contig6868:7404..75301681463943.013692-CDS-Ecto-sp13_S_contig6868:7404..7530Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6868 7405..7530 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463943.0295258-UTR-Ecto-sp13_S_contig6868:7530..75391681463943.0295258-UTR-Ecto-sp13_S_contig6868:7530..7539Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6868 7531..7539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6868.17832.1prot_Ecto-sp13_S_contig6868.17832.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6868 6487..7530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6868.17832.1

>prot_Ecto-sp13_S_contig6868.17832.1 ID=prot_Ecto-sp13_S_contig6868.17832.1|Name=mRNA_Ecto-sp13_S_contig6868.17832.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=230bp
MLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGILIGYAWQTLSLKGLL
KAPKPLVNLFRNNAFLRAEYAKAGKEYGQDVPLHDGDHDHEDDDDSDATL
DEASEGTKKGEAVGKKDKGAGKRAAAPTDREASSDAARKTARGEGAGKGA
KPVPDEEDSDDSGTEESQAAEGERGGEYASGEESEELADVKEFDEEAESM
LEEFEGDLDTSQDFSDSYEEEEDEEEDDF*
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mRNA from alignment at Ecto-sp13_S_contig6868:6487..7539-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6868.17832.1 ID=mRNA_Ecto-sp13_S_contig6868.17832.1|Name=mRNA_Ecto-sp13_S_contig6868.17832.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1053bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6868:6487..7539- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGAACATGCTGGATATGTTCGAGCTACCGACCGAGCTGCTACCGTA CTTCTTCGTGGCGCAGACGCTTATGATGGAGGGCGTTATCCCGTGGGTGG ATTTAAGTGGGATTCTCATCGGCTACGCTTGGCAGGTATGGCCTACAGTA TGCGTGATAAAAAGTCGGTGGAGGGGTTATTTTCCCGTCCGACGCACTTC TTCGCTGCCAGCATCCGTGTGCTCAAAGCTTGCTTTTATATTTCTTCCGG TACCACTTTTCTGCTGTGAGCAAATGCTTGTCGAGGTACAAGTAGTTCCT GCAACTGTGTAGCAACGAGGTAAAATATTCAGTTCCGTGTCCATCTCTAA TTATTGTAAGCTTTCTCGGTTAGTTGCCGGTCTGTTTCGTTCGGAATGTC CTCCGCCACCTCCTTTTTCTCAGATGTGCACAACGAACGGACGCTGCCGT TTGTGTCGTGACTGCCCTTTTATTTCCCCTACTTTCCAGACTCTGTCCCT CAAGGGCCTCCTGAAGGCACCCAAGCCTCTGGTGAACCTCTTCAGGAACA ACGCCTTCTTGCGAGCCGAGTACGCCAAGGCCGGCAAGGAATACGGGCAG GACGTGCCGTTGCACGACGGGGACCACGACCACGAAGACGACGACGACAG CGACGCCACCCTCGATGAGGCGAGCGAAGGCACGAAGAAGGGGGAGGCCG TGGGGAAGAAGGATAAGGGTGCGGGGAAGCGCGCCGCGGCGCCGACGGAC CGAGAGGCATCGTCTGATGCGGCTAGAAAAACGGCCAGGGGGGAGGGTGC AGGGAAGGGGGCGAAGCCCGTGCCCGACGAGGAGGATAGCGACGATTCGG GGACCGAGGAGAGTCAGGCGGCGGAGGGGGAACGCGGAGGGGAATACGCG AGCGGGGAAGAGAGCGAAGAGCTGGCGGACGTGAAAGAGTTCGACGAGGA GGCCGAGAGCATGCTCGAGGAGTTCGAAGGCGACCTCGACACCTCCCAAG ACTTTTCCGACTCGTACGAGGAAGAGGAGGACGAGGAGGAGGACGATTTC TAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6868:6487..7539-

>mRNA_Ecto-sp13_S_contig6868.17832.1 ID=mRNA_Ecto-sp13_S_contig6868.17832.1|Name=mRNA_Ecto-sp13_S_contig6868.17832.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=690bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6868:6487..7539- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGATATGTTCGAGCTACCGACCGAGCTGCTACCGTACTTCTTCGT
GGCGCAGACGCTTATGATGGAGGGCGTTATCCCGTGGGTGGATTTAAGTG
GGATTCTCATCGGCTACGCTTGGCAGACTCTGTCCCTCAAGGGCCTCCTG
AAGGCACCCAAGCCTCTGGTGAACCTCTTCAGGAACAACGCCTTCTTGCG
AGCCGAGTACGCCAAGGCCGGCAAGGAATACGGGCAGGACGTGCCGTTGC
ACGACGGGGACCACGACCACGAAGACGACGACGACAGCGACGCCACCCTC
GATGAGGCGAGCGAAGGCACGAAGAAGGGGGAGGCCGTGGGGAAGAAGGA
TAAGGGTGCGGGGAAGCGCGCCGCGGCGCCGACGGACCGAGAGGCATCGT
CTGATGCGGCTAGAAAAACGGCCAGGGGGGAGGGTGCAGGGAAGGGGGCG
AAGCCCGTGCCCGACGAGGAGGATAGCGACGATTCGGGGACCGAGGAGAG
TCAGGCGGCGGAGGGGGAACGCGGAGGGGAATACGCGAGCGGGGAAGAGA
GCGAAGAGCTGGCGGACGTGAAAGAGTTCGACGAGGAGGCCGAGAGCATG
CTCGAGGAGTTCGAAGGCGACCTCGACACCTCCCAAGACTTTTCCGACTC
GTACGAGGAAGAGGAGGACGAGGAGGAGGACGATTTCTAG
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