prot_Ecto-sp13_S_contig68582.17821.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig68582.17821.1
Unique Nameprot_Ecto-sp13_S_contig68582.17821.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length35
Homology
BLAST of mRNA_Ecto-sp13_S_contig68582.17821.1 vs. uniprot
Match: D8LG80_ECTSI (40S ribosomal protein S30 n=2 Tax=PX clade TaxID=569578 RepID=D8LG80_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.380e-13
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 0
Query:    1 MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRC 34
            MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGR 
Sbjct:    1 MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRA 34          
BLAST of mRNA_Ecto-sp13_S_contig68582.17821.1 vs. uniprot
Match: A0A139B028_GONPJ (40S ribosomal protein S30 n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139B028_GONPJ)

HSP 1 Score: 60.1 bits (144), Expect = 3.710e-11
Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = 0
Query:    1 MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRC 34
            MGKVHGSLARAGKVKGQTPK++K EKKK+PRGR 
Sbjct:    1 MGKVHGSLARAGKVKGQTPKVEKQEKKKKPRGRA 34          
BLAST of mRNA_Ecto-sp13_S_contig68582.17821.1 vs. uniprot
Match: A0A2P2JG85_RHIMU (40S ribosomal protein S30 n=2 Tax=fabids TaxID=91835 RepID=A0A2P2JG85_RHIMU)

HSP 1 Score: 59.3 bits (142), Expect = 6.490e-11
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 0
Query:    1 MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRC 34
            MGKVHGSLARAGKV+GQTPK+DK +KKK+PRGR 
Sbjct:    1 MGKVHGSLARAGKVRGQTPKVDKQDKKKKPRGRA 34          
BLAST of mRNA_Ecto-sp13_S_contig68582.17821.1 vs. uniprot
Match: A0A8H6TLP8_MYCCL (Aryl-alcohol oxidase-like protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A8H6TLP8_MYCCL)

HSP 1 Score: 59.7 bits (143), Expect = 8.170e-11
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0
Query:    1 MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRC 34
            MGKVHGSLARAGKVKGQTPK+DK EKKK P+GR 
Sbjct:    1 MGKVHGSLARAGKVKGQTPKVDKQEKKKTPKGRA 34          
BLAST of mRNA_Ecto-sp13_S_contig68582.17821.1 vs. uniprot
Match: A9BL09_HEMAN (40S ribosomal protein S30 n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A9BL09_HEMAN)

HSP 1 Score: 58.9 bits (141), Expect = 8.800e-11
Identity = 27/35 (77.14%), Postives = 33/35 (94.29%), Query Frame = 0
Query:    1 MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRCV 35
            MGKVHGSL+RAGKVKGQTPK++K E+KKQP+GR +
Sbjct:    1 MGKVHGSLSRAGKVKGQTPKVEKKERKKQPKGRAL 35          
BLAST of mRNA_Ecto-sp13_S_contig68582.17821.1 vs. uniprot
Match: A8JF66_CHLRE (40S ribosomal protein S30 n=7 Tax=cellular organisms TaxID=131567 RepID=A8JF66_CHLRE)

HSP 1 Score: 58.5 bits (140), Expect = 1.440e-10
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 0
Query:    1 MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRCV 35
            MGKVHGSLARAGKV+GQTPK+ K EKKK+PRGR +
Sbjct:    1 MGKVHGSLARAGKVRGQTPKVPKQEKKKRPRGRAM 35          
BLAST of mRNA_Ecto-sp13_S_contig68582.17821.1 vs. uniprot
Match: A0A3B6TKG8_WHEAT (40S ribosomal protein S30 n=3 Tax=Triticum aestivum TaxID=4565 RepID=A0A3B6TKG8_WHEAT)

HSP 1 Score: 58.2 bits (139), Expect = 1.550e-10
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 0
Query:    1 MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRCV 35
            MGKVHGSLARAGKV+GQTPK+ K +KKKQPRGR  
Sbjct:    1 MGKVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAA 35          
BLAST of mRNA_Ecto-sp13_S_contig68582.17821.1 vs. uniprot
Match: Q584U6_TRYB2 (40S ribosomal protein S30 n=9 Tax=Trypanosoma TaxID=5690 RepID=Q584U6_TRYB2)

HSP 1 Score: 58.5 bits (140), Expect = 1.580e-10
Identity = 29/34 (85.29%), Postives = 30/34 (88.24%), Query Frame = 0
Query:    1 MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRC 34
            MGKVHGSLARAGKVK QTPK+ K EKKKQPRGR 
Sbjct:    1 MGKVHGSLARAGKVKNQTPKVSKQEKKKQPRGRA 34          
BLAST of mRNA_Ecto-sp13_S_contig68582.17821.1 vs. uniprot
Match: E1Z807_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z807_CHLVA)

HSP 1 Score: 58.9 bits (141), Expect = 1.770e-10
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 0
Query:    1 MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRCV 35
            MGKVHGSLARAGKV+GQTPK+ K EKKKQP+GR +
Sbjct:   26 MGKVHGSLARAGKVRGQTPKVPKQEKKKQPKGRAM 60          
BLAST of mRNA_Ecto-sp13_S_contig68582.17821.1 vs. uniprot
Match: A0A067PA83_PLEOS (40S ribosomal protein S30 n=5 Tax=Agaricomycetes TaxID=155619 RepID=A0A067PA83_PLEOS)

HSP 1 Score: 58.2 bits (139), Expect = 2.090e-10
Identity = 28/34 (82.35%), Postives = 30/34 (88.24%), Query Frame = 0
Query:    1 MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRC 34
            MGKVHGSLARAGKVK QTPK+DK EKKK P+GR 
Sbjct:    1 MGKVHGSLARAGKVKSQTPKVDKTEKKKTPKGRA 34          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig68582.17821.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG80_ECTSI1.380e-1397.0640S ribosomal protein S30 n=2 Tax=PX clade TaxID=5... [more]
A0A139B028_GONPJ3.710e-1185.2940S ribosomal protein S30 n=1 Tax=Gonapodya prolif... [more]
A0A2P2JG85_RHIMU6.490e-1182.3540S ribosomal protein S30 n=2 Tax=fabids TaxID=918... [more]
A0A8H6TLP8_MYCCL8.170e-1185.29Aryl-alcohol oxidase-like protein n=1 Tax=Mycena c... [more]
A9BL09_HEMAN8.800e-1177.1440S ribosomal protein S30 n=1 Tax=Hemiselmis ander... [more]
A8JF66_CHLRE1.440e-1080.0040S ribosomal protein S30 n=7 Tax=cellular organis... [more]
A0A3B6TKG8_WHEAT1.550e-1080.0040S ribosomal protein S30 n=3 Tax=Triticum aestivu... [more]
Q584U6_TRYB21.580e-1085.2940S ribosomal protein S30 n=9 Tax=Trypanosoma TaxI... [more]
E1Z807_CHLVA1.770e-1080.00Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A067PA83_PLEOS2.090e-1082.3540S ribosomal protein S30 n=5 Tax=Agaricomycetes T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006846Ribosomal protein S30PFAMPF04758Ribosomal_S30coord: 3..34
e-value: 3.6E-17
score: 62.3
NoneNo IPR availablePANTHERPTHR12650:SF1540S RIBOSOMAL PROTEIN S30coord: 1..33
NoneNo IPR availablePANTHERPTHR1265040S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBIcoord: 1..33

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig68582contigEcto-sp13_S_contig68582:19..123 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig68582.17821.1mRNA_Ecto-sp13_S_contig68582.17821.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig68582 10..123 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig68582.17821.1 ID=prot_Ecto-sp13_S_contig68582.17821.1|Name=mRNA_Ecto-sp13_S_contig68582.17821.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=35bp
MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRCV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006846Ribosomal_S30