mRNA_Ecto-sp13_S_contig68582.17821.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig68582.17821.1
Unique Name	mRNA_Ecto-sp13_S_contig68582.17821.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig68582.17821.1 vs. uniprot
Match: D8LG80_ECTSI (40S ribosomal protein S30 n=2 Tax=PX clade TaxID=569578 RepID=D8LG80_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 3.860e-14
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 1

Query:   10 MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRC 111
            MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGR 
Sbjct:    1 MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRA 34

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BLAST of mRNA_Ecto-sp13_S_contig68582.17821.1 vs. uniprot
Match: E1Z807_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z807_CHLVA)

HSP 1 Score: 62.8 bits (151), Expect = 6.100e-12
Identity = 29/37 (78.38%), Postives = 34/37 (91.89%), Query Frame = 1

Query:    4 STMGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRCV 114
            +TMGKVHGSLARAGKV+GQTPK+ K EKKKQP+GR +
Sbjct:   24 ATMGKVHGSLARAGKVRGQTPKVPKQEKKKQPKGRAM 60

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BLAST of mRNA_Ecto-sp13_S_contig68582.17821.1 vs. uniprot
Match: A0A139B028_GONPJ (40S ribosomal protein S30 n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139B028_GONPJ)

HSP 1 Score: 61.6 bits (148), Expect = 1.040e-11
Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = 1

Query:   10 MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRC 111
            MGKVHGSLARAGKVKGQTPK++K EKKK+PRGR 
Sbjct:    1 MGKVHGSLARAGKVKGQTPKVEKQEKKKKPRGRA 34

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BLAST of mRNA_Ecto-sp13_S_contig68582.17821.1 vs. uniprot
Match: A0A2P2JG85_RHIMU (40S ribosomal protein S30 n=2 Tax=fabids TaxID=91835 RepID=A0A2P2JG85_RHIMU)

HSP 1 Score: 60.8 bits (146), Expect = 1.820e-11
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 1

Query:   10 MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRC 111
            MGKVHGSLARAGKV+GQTPK+DK +KKK+PRGR 
Sbjct:    1 MGKVHGSLARAGKVRGQTPKVDKQDKKKKPRGRA 34

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BLAST of mRNA_Ecto-sp13_S_contig68582.17821.1 vs. uniprot
Match: A0A8H6TLP8_MYCCL (Aryl-alcohol oxidase-like protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A8H6TLP8_MYCCL)

HSP 1 Score: 61.2 bits (147), Expect = 2.300e-11
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 1

Query:   10 MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRC 111
            MGKVHGSLARAGKVKGQTPK+DK EKKK P+GR 
Sbjct:    1 MGKVHGSLARAGKVKGQTPKVDKQEKKKTPKGRA 34

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BLAST of mRNA_Ecto-sp13_S_contig68582.17821.1 vs. uniprot
Match: A9BL09_HEMAN (40S ribosomal protein S30 n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A9BL09_HEMAN)

HSP 1 Score: 60.5 bits (145), Expect = 2.470e-11
Identity = 27/35 (77.14%), Postives = 33/35 (94.29%), Query Frame = 1

Query:   10 MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRCV 114
            MGKVHGSL+RAGKVKGQTPK++K E+KKQP+GR +
Sbjct:    1 MGKVHGSLSRAGKVKGQTPKVEKKERKKQPKGRAL 35

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BLAST of mRNA_Ecto-sp13_S_contig68582.17821.1 vs. uniprot
Match: A0A0V0GKS0_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0GKS0_SOLCH)

HSP 1 Score: 61.2 bits (147), Expect = 2.470e-11
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 1

Query:    4 STMGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRC 111
            STMGKVHGSLARAGKV+GQTPK+ K +KKK+PRGR 
Sbjct:   22 STMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRA 57

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BLAST of mRNA_Ecto-sp13_S_contig68582.17821.1 vs. uniprot
Match: A0A2G5F957_AQUCA (Uncharacterized protein (Fragment) n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5F957_AQUCA)

HSP 1 Score: 61.6 bits (148), Expect = 2.700e-11
Identity = 29/37 (78.38%), Postives = 34/37 (91.89%), Query Frame = 1

Query:    1 LSTMGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRC 111
            L+TMGKVHGSLARAGKV+GQTPK+ K +KKK+PRGR 
Sbjct:   39 LTTMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRA 75

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BLAST of mRNA_Ecto-sp13_S_contig68582.17821.1 vs. uniprot
Match: A0A834H0F1_RHOSS (Uncharacterized protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834H0F1_RHOSS)

HSP 1 Score: 61.2 bits (147), Expect = 3.230e-11
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 1

Query:    4 STMGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRC 111
            STMGKVHGSLARAGKV+GQTPK+ K +KKK+PRGR 
Sbjct:   38 STMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRA 73

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BLAST of mRNA_Ecto-sp13_S_contig68582.17821.1 vs. uniprot
Match: A8JF66_CHLRE (40S ribosomal protein S30 n=7 Tax=cellular organisms TaxID=131567 RepID=A8JF66_CHLRE)

HSP 1 Score: 60.1 bits (144), Expect = 4.040e-11
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 1

Query:   10 MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRCV 114
            MGKVHGSLARAGKV+GQTPK+ K EKKK+PRGR +
Sbjct:    1 MGKVHGSLARAGKVRGQTPKVPKQEKKKRPRGRAM 35

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig68582.17821.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig68582.17821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LG80_ECTSI	3.860e-14	97.06	40S ribosomal protein S30 n=2 Tax=PX clade TaxID=5...	[more]
E1Z807_CHLVA	6.100e-12	78.38	Uncharacterized protein n=1 Tax=Chlorella variabil...	[more]
A0A139B028_GONPJ	1.040e-11	85.29	40S ribosomal protein S30 n=1 Tax=Gonapodya prolif...	[more]
A0A2P2JG85_RHIMU	1.820e-11	82.35	40S ribosomal protein S30 n=2 Tax=fabids TaxID=918...	[more]
A0A8H6TLP8_MYCCL	2.300e-11	85.29	Aryl-alcohol oxidase-like protein n=1 Tax=Mycena c...	[more]
A9BL09_HEMAN	2.470e-11	77.14	40S ribosomal protein S30 n=1 Tax=Hemiselmis ander...	[more]
A0A0V0GKS0_SOLCH	2.470e-11	80.56	Putative ovule protein (Fragment) n=1 Tax=Solanum ...	[more]
A0A2G5F957_AQUCA	2.700e-11	78.38	Uncharacterized protein (Fragment) n=1 Tax=Aquileg...	[more]
A0A834H0F1_RHOSS	3.230e-11	80.56	Uncharacterized protein n=1 Tax=Rhododendron simsi...	[more]
A8JF66_CHLRE	4.040e-11	80.00	40S ribosomal protein S30 n=7 Tax=cellular organis...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig68582	contig	Ecto-sp13_S_contig68582:10..123 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	1
Seed ortholog score	67.8
Seed ortholog evalue	1.2e-09
Seed eggNOG ortholog	2880.D8LG80
Preferred name	RPS30
Model size	114
KEGG ko	ko:K02983
KEGG Pathway	ko03010,map03010
KEGG Module	M00177,M00179
Hectar predicted targeting category	no signal peptide or anchor
GOs	GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons	1
EggNOG free text desc.	structural constituent of ribosome
EggNOG OGs	KOG0009@1,KOG0009@2759
Cds size	105
COG Functional cat.	J
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	br01610,ko00000,ko00001,ko00002,ko03011,ko04121

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463942.2061453-UTR-Ecto-sp13_S_contig68582:9..18	1681463942.2061453-UTR-Ecto-sp13_S_contig68582:9..18	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig68582 10..18 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463942.2178454-CDS-Ecto-sp13_S_contig68582:18..123	1681463942.2178454-CDS-Ecto-sp13_S_contig68582:18..123	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig68582 19..123 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig68582.17821.1	prot_Ecto-sp13_S_contig68582.17821.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig68582 19..123 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig68582:10..123+
coding sequence from alignment at Ecto-sp13_S_contig68582:10..123+

protein sequence of mRNA_Ecto-sp13_S_contig68582.17821.1

>prot_Ecto-sp13_S_contig68582.17821.1 ID=prot_Ecto-sp13_S_contig68582.17821.1|Name=mRNA_Ecto-sp13_S_contig68582.17821.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=35bp
MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRCV

mRNA from alignment at Ecto-sp13_S_contig68582:10..123+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig68582.17821.1 ID=mRNA_Ecto-sp13_S_contig68582.17821.1|Name=mRNA_Ecto-sp13_S_contig68582.17821.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68582:10..123+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTTCAACCATGGGCAAGGTTCACGGATCGCTGGCTCGTGCCGGTAAGGT
GAAGGGGCAGACGCCCAAGATCGACAAGATCGAGAAGAAGAAGCAGCCGC
GCGGAAGGTGTGTG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig68582:10..123+

>mRNA_Ecto-sp13_S_contig68582.17821.1 ID=mRNA_Ecto-sp13_S_contig68582.17821.1|Name=mRNA_Ecto-sp13_S_contig68582.17821.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68582:10..123+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCAAGGTTCACGGATCGCTGGCTCGTGCCGGTAAGGTGAAGGGGCA
GACGCCCAAGATCGACAAGATCGAGAAGAAGAAGCAGCCGCGCGGAAGGT
GTGTG