mRNA_Ecto-sp13_S_contig6799.17731.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6799.17731.1 vs. uniprot
Match: A0A6H5JZX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZX1_9PHAE) HSP 1 Score: 809 bits (2090), Expect = 3.210e-267 Identity = 449/631 (71.16%), Postives = 490/631 (77.65%), Query Frame = 1
Query: 1 EREFITRRTLRLWAPTWFRMVGNNLFACVRDTREGIRDPTGSRLQARLRAGRIGPYPEWYLKLRVPVAIDLPRRRSGASYWYDEHVRAKTEQYFSGRRSSGKGWPMENDLPLRRPRYSFYSRTSSASMDTSGAMAQTLSMDTHRSCGRQNQAGATEDDLPRRRFFFPSMTGSVDDAIDEQAIQEYGVDTEAISEVQDRSHGRGRTPGRPTEEDLPRRRPSFSFASGVSVDRADNLHVVRSTPEHEKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRIDDPDLQSVPEHEHGLQYTVDEINDRRDGERRRAGPIEDDLPHRRSGFCPTFGSASHDPDHPGEQAKH-----------ERGKRSNLTQRWGXXXXXXXXXXXXXFSSASTASVDGSSEPEKEAVSTCEDGLESVADEDGGRRWGRVRGGPAEDNLPRRRPVVSSMSDSSTDSKRHGLRQWXXXXXXXXXXXXXXXXXXXTTSICSISDTGLPSAPDRGDGVMFDADEDGLHHGGGGKWFGPVEDGLPQRRSSLSFASTTSVSNSHDSGPQPAPELGKSATSAVSEDGLKNGRGRKWGGPAEDDLPRRRPWFSSTSTSSLSSINNTGLPSASDCRNGGMSGVDENGLKHGRGNK 1860
EREFI RRTLRLWAPTWFRMVGNNLFACVRDTREGIRDPTGSRLQARLRAGRIGPYPEW KL VPVAIDLPRRRSGASYWY+EHV AKTEQ+ SGRRSSG+GWPMENDLPLRR RYSF SRTSSASMDTSG MA+++ D HRS GRQNQ ATEDDLPRRRFF PS++GSVD+AID+QAIQ++GVDT AISEVQDR+HGRGRTPG PTEEDLPRRRP F+ A GV V+RADNLHVVRS PEH + G IDD L SVPEH+HGL+ VDEI+ RR ERRRAGPIEDDLPHRRSG T G+ASHDPDHPG QAKH ERG R ++TQRWG FSSASTASVDGSSE +KE+VSTCE+ L SV DE+ R WGRVR GPAEDNLP RR V SM DS+ DS+ HGLR+W XXXXXXXXXXXXXXX T S SI+D GLPS D GDG + DADEDGL H G KW GP+EDGLPQRRS SFAST SV N++++GPQPAPELG SATSAV EDGLKNGR KWGG A+DDLPRRRPWF STSTSS SSI++TG PSASD NGG SGVDE+GLKHGRGN+
Sbjct: 644 EREFIIRRTLRLWAPTWFRMVGNNLFACVRDTREGIRDPTGSRLQARLRAGRIGPYPEWNFKLHVPVAIDLPRRRSGASYWYEEHVDAKTEQFSSGRRSSGEGWPMENDLPLRRSRYSFNSRTSSASMDTSGEMAKSVKKDEHRSYGRQNQGDATEDDLPRRRFFHPSISGSVDNAIDKQAIQDHGVDTGAISEVQDRNHGRGRTPGGPTEEDLPRRRPGFALAPGVLVNRADNLHVVRSAPEHGECQTRKRGGLMEDSLPRRRSCLFSELGSSEGSIDDHGLPSVPEHDHGLEDAVDEIDARRGWERRRAGPIEDDLPHRRSGSSSTSGAASHDPDHPGVQAKHDYSKNTRPTGDERGDRRSVTQRWGEPVEDSLPRRRSVFSSASTASVDGSSERQKESVSTCENDLGSVVDENSRRGWGRVRRGPAEDNLPHRRSVFPSMWDSAKDSRGHGLRKWGEXXXXXXXXXXXXXXXASTASSGSINDAGLPSRTDHGDGALLDADEDGLQHCRGRKWCGPIEDGLPQRRSISSFASTASVGNNNNTGPQPAPELGNSATSAVCEDGLKNGRRPKWGGLAQDDLPRRRPWFFSTSTSSTSSISDTGQPSASDNGNGGTSGVDESGLKHGRGNE 1274
BLAST of mRNA_Ecto-sp13_S_contig6799.17731.1 vs. uniprot
Match: A0A6H5KD37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD37_9PHAE) HSP 1 Score: 705 bits (1820), Expect = 4.030e-232 Identity = 380/565 (67.26%), Postives = 414/565 (73.27%), Query Frame = 1
Query: 1 EREFITRRTLRLWAPTWFRMVGNNLFACVRDTREGIRDPTGSRLQARLRAGRIGPYPEWYLKLRVPVAIDLPRRRSGASYWYDEHVRAKTEQYFSGRRSSGKGWPMENDLPLRRPRYSFYSRTSSASMDTSGAMAQTLSMDTHRSCGRQNQAGATEDDLPRRRFFFPSMTGSVDDAIDEQAIQEYGVDTEAISEVQDRSHGRGRTPGRPTEEDLPRRRPSFSFASGVSVDRADNLHVVRSTPEHEKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRIDDPDLQSVPEHEHGLQYTVDEINDRRDGERRRAGPIEDDLPHRRSGFCPTFGSASHDPDHPGEQAKHE-----------RGKRSNLTQRWGXXXXXXXXXXXXXFSSASTASVDGSSEPEKEAVSTCEDGLESVADEDGGRRWGRVRGGPAEDNLPRRRPVVSSMSDSSTDSKRHGLRQWXXXXXXXXXXXXXXXXXXXTTSICSISDTGLPSAPDRGDGVMFDADEDGLHHGGGGKWFGPVEDGLPQRRSSLSFASTTSVSNSHDSGPQPAPELGKSATSAVSEDG 1662
EREFITRRTLRLWAPTWFRMVGNNLFACVRDTREGIRDPTGSRLQARLRAGRIGP+PE Y KLRVPVAIDLPRRRSGASYWY+EHV A TEQ GRRSSG+G PMENDLPLRRPRYSF+SRTSS SM TSG MA+ + MD HRS GRQNQAGAT+DDLPRRRFF PSM GSVD+ I EQA+Q+YG+DT AISEVQDR+HGRGRTPG PTEEDLPRRRP + A GV VDRADNLHVVRS PEHE+S GRIDD L SV EH+HGL+Y VDEI+ RRD ERRRAGPIEDDLPHRRSGF T G+ASHDPDHPG Q KH+ RG R ++TQRWG FSSASTASVDGS++ +KE+V CE+ E V DE+ R WGRVR GPAEDNLP RRPV SMSD + DS+ HGLR+W T SICSISDTGLPS D DGV+ DAD+DGL H G K GP+EDGLPQRRS S AST SV NS +GPQP PELG SATSAV EDG
Sbjct: 813 EREFITRRTLRLWAPTWFRMVGNNLFACVRDTREGIRDPTGSRLQARLRAGRIGPHPELYFKLRVPVAIDLPRRRSGASYWYEEHVDANTEQCSPGRRSSGQGLPMENDLPLRRPRYSFHSRTSSPSMYTSGEMAKPMKMDEHRSYGRQNQAGATKDDLPRRRFFSPSMLGSVDNVIAEQAMQDYGIDTGAISEVQDRNHGRGRTPGGPTEEDLPRRRPGYLLAPGVLVDRADNLHVVRSAPEHEESRTQKRGGLMDDSLPRRRSCLFSDLGSSKGRIDDHGLLSVLEHDHGLEYAVDEIDARRDWERRRAGPIEDDLPHRRSGFSSTPGAASHDPDHPGVQTKHDYSKNTRPTGDKRGDRRSVTQRWGEPVEDSVPRRRSDFSSASTASVDGSNKRQKESVLMCENYQEPVVDEESRRGWGRVRAGPAEDNLPHRRPVFPSMSDYAKDSRGHGLRKWGEPVENDLPRRRSWFSSASTASICSISDTGLPSRTDHRDGVLLDADDDGLQHCRGRKRCGPIEDGLPQRRSIFSIASTESVGNSSSTGPQPTPELGNSATSAVCEDG 1377
BLAST of mRNA_Ecto-sp13_S_contig6799.17731.1 vs. uniprot
Match: A0A6H5KBY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY1_9PHAE) HSP 1 Score: 377 bits (969), Expect = 6.150e-112 Identity = 188/227 (82.82%), Postives = 200/227 (88.11%), Query Frame = 1
Query: 1 EREFITRRTLRLWAPTWFRMVGNNLFACVRDTREGIRDPTGSRLQARLRAGRIGPYPEWYLKLRVPVAIDLPRRRSGASYWYDEHVRAKTEQYFSGRRSSGKGWPMENDLPLRRPRYSFYSRTSSASMDTSGAMAQTLSMDTHRSCGRQNQAGATEDDLPRRRFFFPSMTGSVDDAIDEQAIQEYGVDTEAISEVQDRSHGRGRTPGRPTEEDLPRRRPSFSFASGV 681
EREFITRRTLRLWAPTWFRMVGNNLFACVRDTREGIRDPTGSRLQARLRAGRIGPYPE Y KLRVPVAIDLPRRRSGASYW++EHV A TEQ GRRSSG+GWPMENDLPLRRPRYSF+SRTSS SMDTSG A+ + MD HRS GRQNQAGAT+DDLPRRRFF PSM GSVD I EQA+Q+YG+DT AI EV DR+HGRGRTPG PTEEDLPRRRP + A GV
Sbjct: 672 EREFITRRTLRLWAPTWFRMVGNNLFACVRDTREGIRDPTGSRLQARLRAGRIGPYPESYFKLRVPVAIDLPRRRSGASYWHEEHVDANTEQCSPGRRSSGQGWPMENDLPLRRPRYSFHSRTSSPSMDTSGETAKPMKMDEHRSYGRQNQAGATKDDLPRRRFFSPSMLGSVDIVIAEQAMQDYGIDTGAILEVHDRNHGRGRTPGGPTEEDLPRRRPGYVLAPGV 898
BLAST of mRNA_Ecto-sp13_S_contig6799.17731.1 vs. uniprot
Match: A0A6H5JTJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTJ3_9PHAE) HSP 1 Score: 274 bits (701), Expect = 6.940e-73 Identity = 236/673 (35.07%), Postives = 293/673 (43.54%), Query Frame = 1
Query: 1 EREFITRRTLRLWAPTWFRMVGNNLFACVRDTREGIRDPTGSRLQARLRAGRIGPYPEWYLK-LRVPVAIDLPRRRSGASYWY---DEHVRAKTEQYFSGRRSSGKGWPMENDLPLRRPRYSFYSRTSSASMDTSG-----------------------------------------------------------AMAQTLSMDT-HRSCGRQNQAGATEDDLPRRRFFFPSMTGSVDDAIDEQAIQEYGVDTEAISEVQDRSHGRGRTPGRPTEEDLPRRRPSFSFASGVSVDRADNLHVVRSTPEHEKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRI-------------DDPDLQSVPEHEHGLQYTVDEINDRRDGERRRAGPIEDDLPHRRSGFCPTFGSASHDPDHPGEQAKH-----------ERGKRSNLTQRWGXXXXXXXXXXXXXFSSASTASVDGSSEPEKEAVSTCEDGLESVADEDGGRRWGRV-RGGPAEDNLPRRRPVVSSMSDSSTDSKRHGLRQWXXXXXXXXXXXXXXXXXXXTTSICSISDTGLPSAPDRGDG-----VMFDADEDGLHHGGGGKWFGPVEDGLPQRRSSLSFASTTSVSNSHDSGPQPAPELGKSATSAVSEDGLKNGRGRKWGGPAEDDLPRRRPWFS 1737
EREFI RRTLRLW TWF MVG+N+FACVRDTREGIRDPTGSR Q RLRAG+IGPYPEW LK LR PV IDLPRR G WY D+ A T+Q SGRR K P END P+RR YS S ++ SM+ +G + AQ++S H S GRQ AG EDDLPRRR + +DDA+ EQ I E EA +VQ RGR G P ED PRRRPS SG SVD DN + +S PEH+ R D+ D Q +PE+ + L+ VD+ + G R + +EDDLPHRRSG+ G A H + A H ++ RS+ T +WG F SASTAS+D ++AV +DGL+ DE +R G GGP +++L RRP S S +S + + GL + P+ G V + GG P EDGLP+RRS S TSV ++ + Q E S+ G + G GR G EDD+PRRR WFS
Sbjct: 594 EREFINRRTLRLWGRTWFNMVGSNVFACVRDTREGIRDPTGSRRQDRLRAGQIGPYPEWSLKNLRAPVPIDLPRRNFGGFDWYGGQDDDADAITDQPASGRRRKWKRGPAENDYPIRRSSYSLDSTIAAVSMEEAGQTSSPRSAGISGSDERSGSNENGPIEDNLSFRHSNILVPSAVVVDRRGDAGPLTGREYVSHAQSISAKRRHGSHGRQCGAGLIEDDLPRRRIGLAAGPEILDDAVHEQGIDENEAGLEADEDVQGPRRRRGRRRGEPAGEDFPRRRPSVWSVSGFSVDHVDNTDL-QSVPEHDNDLEHFSDVHGPQNGQSRTRRGPVEDSLPRRRFCSSSIPMSSLDSSDEADRQPLPEYGNDLEAVVDDGSLHGWGHR-QGRHLEDDLPHRRSGYSAASGFARHLDEDLSLPAMHNLDTNMWPASVQQSARSDRTHKWGEPVQDDLPRRRSVFCSASTASMDSIHGSSRQAVP--KDGLKFDVDETPPQRRGSCPHGGPVQNDLSSRRPSFSFRSTTSAEDPP--------------------------------AIDGLQAVPEHGGDAPPLVVNRSWQRERATRGG------PFEDGLPRRRSVFLSTSMTSVDSADEPFLQSVLENRNYRGSSGGWAGRQRGEGRAQEGLVEDDVPRRRSWFS 1224
BLAST of mRNA_Ecto-sp13_S_contig6799.17731.1 vs. uniprot
Match: D7G5L6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L6_ECTSI) HSP 1 Score: 163 bits (413), Expect = 4.710e-40 Identity = 148/440 (33.64%), Postives = 195/440 (44.32%), Query Frame = 1
Query: 58 MVGNNLFACVRDTREGIRDPTGSRLQARLRAGRIGPYPEWYL-KLRVPVAIDLPRRRSGASYWY---DEHVRAKTEQYFSGRRSSGKGWPMENDLPLRRPRYSFYSRTSSASMDTSGAMAQTLSMDTHRSCGRQ---NQAGATEDDL--PRRRFFFPSMTGSVDDAIDEQAI--QEYGVDTEAIS-EVQDRSHGRGRTPGRPTEEDLPRRRPSFSFASGVSVDRADNLHVVRSTPEHEKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXG----------RIDDPDLQSVPEHEHGLQYTVDEINDRRDGERRRAGPIEDDLPHRRSGFCPTFGSASHDPDHPGEQAKHERGKRSNLTQRWGXXXXXXXXXXXXXFSSASTASVDGSS-EPEKEAVSTCEDGLESVADEDGGRR-WGRVRGGPAEDNLPRRRPVVSSMSDS 1305
MVG+NLFACVRDTREGIRDPTGSR QAR RAG +GPYP W L ++R PV IDLPRR SG WY D+ A T+Q S RR K P E+ P+R YS S + SM+ +G + S DT S + N++G ED L P PS VD D + +E +++S + + SHGR G E+DLPRRR + A + D + + E +++ D+QS+PEH++ L+Y + R R R GP+ED LP RR FC SS SVD SS E +++ + + LE+V +EDG + WG RGG ED+LPRRR S+ S S
Sbjct: 1 MVGSNLFACVRDTREGIRDPTGSRHQARSRAGPVGPYPVWSLSRIRAPVPIDLPRRNSGGFDWYGGQDDDANAITDQRASDRRWRWKRGPTESAHPVRPSSYSLDSTIVAVSMEKAGQTSSLRSADTFGSDDERSGSNESGPIEDSLSFPHSSILIPSAVVVVDRQGDAGPLTARECASHFQSVSLKRRHGSHGRQNGAGL-IEDDLPRRRIGLAAAPKILDDAVHKQVIDEKEADLESDEDVQGGPRRRRGRRPGEPTEEDFPLRRSSVWSVSGFSVDHVNNTDVQSMPEHDNDLEYFSNAHGPRNRQSRARQGPVEDSLPRRR--FCS---------------------------------------------SSIPMTSVDNSSIEADRQPLPQHGNDLEAVVEEDGSQHGWGHRRGGLLEDDLPRRRSGYSATSTS 392
BLAST of mRNA_Ecto-sp13_S_contig6799.17731.1 vs. uniprot
Match: A0A6H5J9C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C2_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 2.970e-14 Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 1
Query: 1 EREFITRRTLRLWAPTWFRMVGNNLFACVRDTREGIRDPTGSRLQARLRAGRIGPYPEWYLKLRV 195
ERE R TLRLW WFRMV +N+FAC+RDTREGIR PT S Q RLR GRIGP+P+W LK R
Sbjct: 639 EREVTKRLTLRLWGRAWFRMVFSNMFACLRDTREGIRGPTHSARQGRLRTGRIGPFPDW-LKRRT 702 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6799.17731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6799.17731.1 >prot_Ecto-sp13_S_contig6799.17731.1 ID=prot_Ecto-sp13_S_contig6799.17731.1|Name=mRNA_Ecto-sp13_S_contig6799.17731.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=602bp MVGNNLFACVRDTREGIRDPTGSRLQARLRAGRIGPYPEWYLKLRVPVAIback to top mRNA from alignment at Ecto-sp13_S_contig6799:977..4130- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6799.17731.1 ID=mRNA_Ecto-sp13_S_contig6799.17731.1|Name=mRNA_Ecto-sp13_S_contig6799.17731.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3154bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6799:977..4130- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6799:977..4130- >mRNA_Ecto-sp13_S_contig6799.17731.1 ID=mRNA_Ecto-sp13_S_contig6799.17731.1|Name=mRNA_Ecto-sp13_S_contig6799.17731.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1806bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6799:977..4130- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |