mRNA_Ecto-sp13_S_contig679.17719.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig679.17719.1
Unique NamemRNA_Ecto-sp13_S_contig679.17719.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig679.17719.1 vs. uniprot
Match: A0A6H5KD69_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD69_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 5.310e-71
Identity = 118/120 (98.33%), Postives = 118/120 (98.33%), Query Frame = 1
Query:   10 SGTRKGGVKAATHVPPATPAKTKGSAGDAKGTVIRMRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEMARYANSKR 369
            SGTRKGGVKAATH PPA PAKTKGSAGDAKGTVIRMRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEMARYANSKR
Sbjct:  481 SGTRKGGVKAATHGPPAAPAKTKGSAGDAKGTVIRMRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEMARYANSKR 600          
BLAST of mRNA_Ecto-sp13_S_contig679.17719.1 vs. uniprot
Match: A0A835YKV5_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKV5_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.700e-36
Identity = 65/84 (77.38%), Postives = 77/84 (91.67%), Query Frame = 1
Query:  103 TVIRMRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEMARY 354
            TVIRMRGLPYRASK+++M FF+GC++ E  V FV RADGRVTGEAYV+FA+REDA+ GLR+DR+MIG+RYIELFTSSPEEMARY
Sbjct:  234 TVIRMRGLPYRASKADIMAFFQGCAVAE--VNFVARADGRVTGEAYVKFASREDARQGLRRDRDMIGNRYIELFTSSPEEMARY 315          
BLAST of mRNA_Ecto-sp13_S_contig679.17719.1 vs. uniprot
Match: A0A836CJY6_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJY6_9STRA)

HSP 1 Score: 130 bits (328), Expect = 2.840e-35
Identity = 62/83 (74.70%), Postives = 74/83 (89.16%), Query Frame = 1
Query:  106 VIRMRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEMARY 354
            VIRMRGLPYRASK+++M FFKGC++ E G  FV RADGRVTGEAYV+FA+R+DA+ GLR+DR MIG+RYIELF SSPEEM+RY
Sbjct:  151 VIRMRGLPYRASKADIMAFFKGCAVAEVG--FVARADGRVTGEAYVKFASRDDARQGLRRDRGMIGARYIELFASSPEEMSRY 231          
BLAST of mRNA_Ecto-sp13_S_contig679.17719.1 vs. uniprot
Match: A0A7S3XZQ0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZQ0_HETAK)

HSP 1 Score: 99.0 bits (245), Expect = 2.710e-24
Identity = 51/106 (48.11%), Postives = 72/106 (67.92%), Query Frame = 1
Query:   49 VPPATPAKTKGSAGDAKGTVIRMRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATR-EDAKMGLRKDREMIGSRYIELFTSSPEEMARYANS 363
            VPP  P       GD +  V+RMRGLPY+A++++V+ FF G  + E+ V F    DGR TG+AYV FA+  E  +  + K+REM+GSRY+ELF SS EEMAR++++
Sbjct:    7 VPPPAP-------GDGRAGVLRMRGLPYQANRADVLEFFNGYQVLEDSVVFPVGEDGRATGQAYVVFASAAESRRAAMEKNREMMGSRYVELFMSSQEEMARHSST 105          
BLAST of mRNA_Ecto-sp13_S_contig679.17719.1 vs. uniprot
Match: A0A7S2V6E7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6E7_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 3.390e-24
Identity = 44/82 (53.66%), Postives = 63/82 (76.83%), Query Frame = 1
Query:  106 VIRMRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEMAR 351
            ++R+RGLP+ ASK++V+ FF G  I E+ + FV RADGRVTGE+YV+F + + AK  + +DR +IGSRY+ELF S+P+E  R
Sbjct:   26 ILRLRGLPFSASKADVLHFFDGYEIVEDSIEFVVRADGRVTGESYVQFTSPDAAKAAMARDRNVIGSRYVELFISTPDEYQR 107          
BLAST of mRNA_Ecto-sp13_S_contig679.17719.1 vs. uniprot
Match: A0A7S1TWY6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TWY6_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 7.330e-22
Identity = 45/81 (55.56%), Postives = 59/81 (72.84%), Query Frame = 1
Query:  109 IRMRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEMAR 351
            +R+RGLP+ A+  +V+ FF    +  +GV FV RADG+VTGEAYV F++ E AK  +  DR+ IGSRYIELF SSP+E AR
Sbjct:   25 LRLRGLPFSATAEDVVGFFGDFEVVADGVKFVLRADGKVTGEAYVTFSSAEQAKDAMVMDRQSIGSRYIELFPSSPQEAAR 105          
BLAST of mRNA_Ecto-sp13_S_contig679.17719.1 vs. uniprot
Match: A0A7N0TIK1_KALFE (RRM domain-containing protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0TIK1_KALFE)

HSP 1 Score: 96.7 bits (239), Expect = 1.200e-21
Identity = 44/88 (50.00%), Postives = 65/88 (73.86%), Query Frame = 1
Query:  106 VIRMRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEMARYANSKR 369
            V+RMRGLPY ASK +++ FFK  ++ E+ + FV   +GR +G+A+V+FA+ ED+K  + KDR  +GSRY+ELF S+PEEM+R  +  R
Sbjct:  189 VLRMRGLPYSASKDDIVNFFKDFTLSEDAIHFVLNWEGRPSGDAFVKFASAEDSKAAMVKDRMSVGSRYVELFPSTPEEMSRALSKAR 276          
BLAST of mRNA_Ecto-sp13_S_contig679.17719.1 vs. uniprot
Match: A0A7I8J173_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8J173_SPIIN)

HSP 1 Score: 94.7 bits (234), Expect = 2.160e-21
Identity = 41/82 (50.00%), Postives = 61/82 (74.39%), Query Frame = 1
Query:  106 VIRMRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEMAR 351
            ++++RGLP+ AS+++++ FF G  +PE+ V    RADG+ TGEA+V F + E+AK  + KDR  IGSRY+ELF S+PEE +R
Sbjct:  131 ILKLRGLPFSASRADIVDFFAGFDLPEDKVHIALRADGKATGEAFVEFPSSEEAKRAMNKDRMTIGSRYVELFPSTPEEASR 212          
BLAST of mRNA_Ecto-sp13_S_contig679.17719.1 vs. uniprot
Match: A0A5K1CJV8_9MAGN (RRM domain-containing protein (Fragment) n=2 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1CJV8_9MAGN)

HSP 1 Score: 95.1 bits (235), Expect = 2.520e-21
Identity = 42/88 (47.73%), Postives = 63/88 (71.59%), Query Frame = 1
Query:  106 VIRMRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEMARYANSKR 369
            ++++RGLPY  +KSE++ FFK   + E  +   +R DG+ TGEA+V FA+  D+K  + KD+ MIGSRY+ELF S+PEE++R A+  R
Sbjct:  155 ILKLRGLPYSVTKSEIIDFFKDFELTEANIHIASRYDGKATGEAFVEFASASDSKKAMCKDKMMIGSRYVELFPSTPEELSRAASRSR 242          
BLAST of mRNA_Ecto-sp13_S_contig679.17719.1 vs. uniprot
Match: A0A6U4CVK5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CVK5_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.570e-21
Identity = 43/82 (52.44%), Postives = 60/82 (73.17%), Query Frame = 1
Query:  103 TVIRMRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEMA 348
            TV+RMRGLP+ AS+S+V+ FF+   + E+ + F TR+DGRVTGEAYV F +   A   L++DR  +G+RY+ELF SS +E A
Sbjct:   15 TVLRMRGLPFSASRSDVVGFFRDLEVIEDSIKFATRSDGRVTGEAYVEFDSPATAAEALKRDRCTMGNRYVELFMSSRQEAA 96          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig679.17719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KD69_9PHAE5.310e-7198.33RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YKV5_9STRA1.700e-3677.38RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A836CJY6_9STRA2.840e-3574.70RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S3XZQ0_HETAK2.710e-2448.11Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V6E7_9STRA3.390e-2453.66Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1TWY6_9STRA7.330e-2255.56Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7N0TIK1_KALFE1.200e-2150.00RRM domain-containing protein n=1 Tax=Kalanchoe fe... [more]
A0A7I8J173_SPIIN2.160e-2150.00Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]
A0A5K1CJV8_9MAGN2.520e-2147.73RRM domain-containing protein (Fragment) n=2 Tax=N... [more]
A0A6U4CVK5_9STRA2.570e-2152.44Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig679contigEcto-sp13_S_contig679:5392..6369 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score172.2
Seed ortholog evalue1.1e-40
Seed eggNOG ortholog2880.D7G570
Model size414
KEGG koko:K07088,ko:K12898,ko:K14947
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0008150,GO:0010468,GO:0019219,GO:0019222,GO:0031323,GO:0043484,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363
Exons2
EggNOG free text desc.RNA binding
EggNOG OGsKOG4211@1,KOG4211@2759
Cds size258
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463932.8963964-UTR-Ecto-sp13_S_contig679:5391..54331681463932.8963964-UTR-Ecto-sp13_S_contig679:5391..5433Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig679 5392..5433 -
1681463932.918627-UTR-Ecto-sp13_S_contig679:5691..57691681463932.918627-UTR-Ecto-sp13_S_contig679:5691..5769Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig679 5692..5769 -
1681463932.9293242-UTR-Ecto-sp13_S_contig679:6333..63691681463932.9293242-UTR-Ecto-sp13_S_contig679:6333..6369Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig679 6334..6369 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463932.9092402-CDS-Ecto-sp13_S_contig679:5433..56911681463932.9092402-CDS-Ecto-sp13_S_contig679:5433..5691Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig679 5434..5691 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig679.17719.1prot_Ecto-sp13_S_contig679.17719.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig679 5434..5691 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig679.17719.1

>prot_Ecto-sp13_S_contig679.17719.1 ID=prot_Ecto-sp13_S_contig679.17719.1|Name=mRNA_Ecto-sp13_S_contig679.17719.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
MRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATRED
AKMGLRKDREMIGSRYIELFTSSPEEMARYANSKR*
back to top

mRNA from alignment at Ecto-sp13_S_contig679:5392..6369-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig679.17719.1 ID=mRNA_Ecto-sp13_S_contig679.17719.1|Name=mRNA_Ecto-sp13_S_contig679.17719.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=978bp|location=Sequence derived from alignment at Ecto-sp13_S_contig679:5392..6369- (Ectocarpus species13 EcNAP12_S_4_19m)
AGTGGGGGCTCGGGGACGCGGAAAGGGGGGGTTAAGGCAAGTCATATCGT GATCACACCACACCGTAGGAATAGTTACATTTGCCGACAGCCCGACAACC TCGTATCCAGACCACAGCTCTCGTGTGTGTTGTGTCTTCTCGCACAGCCT CTCCTTCTGTGGAGGCGAAGTACGTGACTCAAACGAAACTAGCAGGCGTT TCCAAGATAGGGAGGGGCCGATACGATATACGAGCTGTTTCACTGGAGTT AAACACGCACGCCTCGGACCTTGTGTCTGCTATAACAAGGCTTGAGTAAT CACGAATTTAGTAGAGGTTGAAGCTTCGCAGTTGCCACATGTTGAAGGAA TACGCGGTGAATTGGGTCCATGGTGACGAAGACTGTTCTCCTTTGTCAGC CGTGCTCTAAAGCAGAGTTGCTGTACTCCTGTTGTGATAGCTCAAGAGTG TGATTGTAATGAGAACATTGGAATGCTGGAATGTGAAATGTGCCATGCGT CGTACCACGGTAGGCGTCTTGGCCAAGAGCAAGCGGTCAGCACAAGACGC ACGTCCACTTGACCCGTCTCCTGTTGGCTTTCTTTCGTCTGTTCCTCTAG GCGGCGACGCACGTGCCCCCCGCGACCCCCGCCAAAACGAAGGGATCGGC GGGAGACGCGAAGGGGACGGTGATTCGCATGAGGGGGCTACCGTACCGCG CGAGCAAGTCGGAGGTGATGTGCTTCTTCAAGGGGTGTTCCATCCCGGAG GAAGGCGTCGCCTTCGTGACCCGGGCGGACGGGCGGGTGACGGGAGAGGC GTATGTGCGGTTTGCTACGCGCGAGGATGCCAAGATGGGGCTCCGCAAGG ACCGCGAGATGATAGGGTCGCGCTACATCGAGCTGTTCACGTCTTCTCCA GAGGAGATGGCCCGGTACGCGAACAGCAAGCGGTAGGGTTAACGTGAGAG CCGGTGGCGAGCGATTCGCCGATGCATT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig679:5392..6369-

>mRNA_Ecto-sp13_S_contig679.17719.1 ID=mRNA_Ecto-sp13_S_contig679.17719.1|Name=mRNA_Ecto-sp13_S_contig679.17719.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig679:5392..6369- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGGGGCTACCGTACCGCGCGAGCAAGTCGGAGGTGATGTGCTTCTT
CAAGGGGTGTTCCATCCCGGAGGAAGGCGTCGCCTTCGTGACCCGGGCGG
ACGGGCGGGTGACGGGAGAGGCGTATGTGCGGTTTGCTACGCGCGAGGAT
GCCAAGATGGGGCTCCGCAAGGACCGCGAGATGATAGGGTCGCGCTACAT
CGAGCTGTTCACGTCTTCTCCAGAGGAGATGGCCCGGTACGCGAACAGCA
AGCGGTAG
back to top