prot_Ecto-sp13_S_contig679.17719.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig679.17719.1
Unique Nameprot_Ecto-sp13_S_contig679.17719.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length86
Homology
BLAST of mRNA_Ecto-sp13_S_contig679.17719.1 vs. uniprot
Match: A0A6H5KD69_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD69_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 6.170e-49
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0
Query:    1 MRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEMARYANSKR 85
            MRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEMARYANSKR
Sbjct:  516 MRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEMARYANSKR 600          
BLAST of mRNA_Ecto-sp13_S_contig679.17719.1 vs. uniprot
Match: A0A835YKV5_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKV5_9STRA)

HSP 1 Score: 127 bits (320), Expect = 4.160e-34
Identity = 61/80 (76.25%), Postives = 73/80 (91.25%), Query Frame = 0
Query:    1 MRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEMARY 80
            MRGLPYRASK+++M FF+GC++ E  V FV RADGRVTGEAYV+FA+REDA+ GLR+DR+MIG+RYIELFTSSPEEMARY
Sbjct:  238 MRGLPYRASKADIMAFFQGCAVAE--VNFVARADGRVTGEAYVKFASREDARQGLRRDRDMIGNRYIELFTSSPEEMARY 315          
BLAST of mRNA_Ecto-sp13_S_contig679.17719.1 vs. uniprot
Match: A0A836CJY6_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJY6_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.350e-33
Identity = 59/80 (73.75%), Postives = 71/80 (88.75%), Query Frame = 0
Query:    1 MRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEMARY 80
            MRGLPYRASK+++M FFKGC++ E G  FV RADGRVTGEAYV+FA+R+DA+ GLR+DR MIG+RYIELF SSPEEM+RY
Sbjct:  154 MRGLPYRASKADIMAFFKGCAVAEVG--FVARADGRVTGEAYVKFASRDDARQGLRRDRGMIGARYIELFASSPEEMSRY 231          
BLAST of mRNA_Ecto-sp13_S_contig679.17719.1 vs. uniprot
Match: A0A7S2V6E7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6E7_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 6.600e-23
Identity = 43/79 (54.43%), Postives = 60/79 (75.95%), Query Frame = 0
Query:    1 MRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEMAR 79
            +RGLP+ ASK++V+ FF G  I E+ + FV RADGRVTGE+YV+F + + AK  + +DR +IGSRY+ELF S+P+E  R
Sbjct:   29 LRGLPFSASKADVLHFFDGYEIVEDSIEFVVRADGRVTGESYVQFTSPDAAKAAMARDRNVIGSRYVELFISTPDEYQR 107          
BLAST of mRNA_Ecto-sp13_S_contig679.17719.1 vs. uniprot
Match: A0A7S1TWY6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TWY6_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 5.130e-21
Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = 0
Query:    1 MRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEMAR 79
            +RGLP+ A+  +V+ FF    +  +GV FV RADG+VTGEAYV F++ E AK  +  DR+ IGSRYIELF SSP+E AR
Sbjct:   27 LRGLPFSATAEDVVGFFGDFEVVADGVKFVLRADGKVTGEAYVTFSSAEQAKDAMVMDRQSIGSRYIELFPSSPQEAAR 105          
BLAST of mRNA_Ecto-sp13_S_contig679.17719.1 vs. uniprot
Match: A0A7S3XZQ0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZQ0_HETAK)

HSP 1 Score: 88.2 bits (217), Expect = 7.080e-21
Identity = 43/84 (51.19%), Postives = 62/84 (73.81%), Query Frame = 0
Query:    1 MRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATR-EDAKMGLRKDREMIGSRYIELFTSSPEEMARYANS 83
            MRGLPY+A++++V+ FF G  + E+ V F    DGR TG+AYV FA+  E  +  + K+REM+GSRY+ELF SS EEMAR++++
Sbjct:   22 MRGLPYQANRADVLEFFNGYQVLEDSVVFPVGEDGRATGQAYVVFASAAESRRAAMEKNREMMGSRYVELFMSSQEEMARHSST 105          
BLAST of mRNA_Ecto-sp13_S_contig679.17719.1 vs. uniprot
Match: A0A7I8J173_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8J173_SPIIN)

HSP 1 Score: 90.9 bits (224), Expect = 9.900e-21
Identity = 42/85 (49.41%), Postives = 60/85 (70.59%), Query Frame = 0
Query:    1 MRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEMARYANSKR 85
            +RGLP+ AS+++++ FF G  +PE+ V    RADG+ TGEA+V F + E+AK  + KDR  IGSRY+ELF S+PEE +R  +  R
Sbjct:  134 LRGLPFSASRADIVDFFAGFDLPEDKVHIALRADGKATGEAFVEFPSSEEAKRAMNKDRMTIGSRYVELFPSTPEEASRAHSRSR 218          
BLAST of mRNA_Ecto-sp13_S_contig679.17719.1 vs. uniprot
Match: A0A5K1CJV8_9MAGN (RRM domain-containing protein (Fragment) n=2 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1CJV8_9MAGN)

HSP 1 Score: 91.3 bits (225), Expect = 1.130e-20
Identity = 42/85 (49.41%), Postives = 60/85 (70.59%), Query Frame = 0
Query:    1 MRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEMARYANSKR 85
            +RGLPY  +KSE++ FFK   + E  +   +R DG+ TGEA+V FA+  D+K  + KD+ MIGSRY+ELF S+PEE++R A+  R
Sbjct:  158 LRGLPYSVTKSEIIDFFKDFELTEANIHIASRYDGKATGEAFVEFASASDSKKAMCKDKMMIGSRYVELFPSTPEELSRAASRSR 242          
BLAST of mRNA_Ecto-sp13_S_contig679.17719.1 vs. uniprot
Match: A0A7R9U105_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U105_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.500e-20
Identity = 46/79 (58.23%), Postives = 59/79 (74.68%), Query Frame = 0
Query:    1 MRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEMAR 79
            +RGLP+ AS ++V+ FFK   +  +GV FV RADG+VTGEAYV F + E+AK  +  DR+ IGSRYIELF SSP+E AR
Sbjct:  310 LRGLPFSASVADVVGFFKEFEVVADGVKFVLRADGKVTGEAYVTFGSAEEAKKAMVMDRQSIGSRYIELFPSSPQEAAR 388          
BLAST of mRNA_Ecto-sp13_S_contig679.17719.1 vs. uniprot
Match: A0A7N0TIK1_KALFE (RRM domain-containing protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0TIK1_KALFE)

HSP 1 Score: 91.3 bits (225), Expect = 2.010e-20
Identity = 42/85 (49.41%), Postives = 62/85 (72.94%), Query Frame = 0
Query:    1 MRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEMARYANSKR 85
            MRGLPY ASK +++ FFK  ++ E+ + FV   +GR +G+A+V+FA+ ED+K  + KDR  +GSRY+ELF S+PEEM+R  +  R
Sbjct:  192 MRGLPYSASKDDIVNFFKDFTLSEDAIHFVLNWEGRPSGDAFVKFASAEDSKAAMVKDRMSVGSRYVELFPSTPEEMSRALSKAR 276          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig679.17719.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KD69_9PHAE6.170e-49100.00RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YKV5_9STRA4.160e-3476.25RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A836CJY6_9STRA1.350e-3373.75RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2V6E7_9STRA6.600e-2354.43Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1TWY6_9STRA5.130e-2155.70Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3XZQ0_HETAK7.080e-2151.19Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7I8J173_SPIIN9.900e-2149.41Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]
A0A5K1CJV8_9MAGN1.130e-2049.41RRM domain-containing protein (Fragment) n=2 Tax=N... [more]
A0A7R9U105_9STRA1.500e-2058.23Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7N0TIK1_KALFE2.010e-2049.41RRM domain-containing protein n=1 Tax=Kalanchoe fe... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 2..67
e-value: 3.1E-5
score: 23.7
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..83
e-value: 5.2E-25
score: 89.2
NoneNo IPR availablePANTHERPTHR13976HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATEDcoord: 1..84
NoneNo IPR availablePANTHERPTHR13976:SF22AT27789Pcoord: 1..84
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 1..82

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig679contigEcto-sp13_S_contig679:5434..5691 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig679.17719.1mRNA_Ecto-sp13_S_contig679.17719.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig679 5392..6369 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig679.17719.1 ID=prot_Ecto-sp13_S_contig679.17719.1|Name=mRNA_Ecto-sp13_S_contig679.17719.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
MRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATRED
AKMGLRKDREMIGSRYIELFTSSPEEMARYANSKR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf