mRNA_Ecto-sp13_S_contig679.17719.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig679.17719.1 vs. uniprot
Match: A0A6H5KD69_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD69_9PHAE) HSP 1 Score: 232 bits (592), Expect = 5.310e-71 Identity = 118/120 (98.33%), Postives = 118/120 (98.33%), Query Frame = 1
Query: 10 SGTRKGGVKAATHVPPATPAKTKGSAGDAKGTVIRMRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEMARYANSKR 369
SGTRKGGVKAATH PPA PAKTKGSAGDAKGTVIRMRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEMARYANSKR
Sbjct: 481 SGTRKGGVKAATHGPPAAPAKTKGSAGDAKGTVIRMRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEMARYANSKR 600
BLAST of mRNA_Ecto-sp13_S_contig679.17719.1 vs. uniprot
Match: A0A835YKV5_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKV5_9STRA) HSP 1 Score: 136 bits (342), Expect = 1.700e-36 Identity = 65/84 (77.38%), Postives = 77/84 (91.67%), Query Frame = 1
Query: 103 TVIRMRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEMARY 354
TVIRMRGLPYRASK+++M FF+GC++ E V FV RADGRVTGEAYV+FA+REDA+ GLR+DR+MIG+RYIELFTSSPEEMARY
Sbjct: 234 TVIRMRGLPYRASKADIMAFFQGCAVAE--VNFVARADGRVTGEAYVKFASREDARQGLRRDRDMIGNRYIELFTSSPEEMARY 315
BLAST of mRNA_Ecto-sp13_S_contig679.17719.1 vs. uniprot
Match: A0A836CJY6_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJY6_9STRA) HSP 1 Score: 130 bits (328), Expect = 2.840e-35 Identity = 62/83 (74.70%), Postives = 74/83 (89.16%), Query Frame = 1
Query: 106 VIRMRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEMARY 354
VIRMRGLPYRASK+++M FFKGC++ E G FV RADGRVTGEAYV+FA+R+DA+ GLR+DR MIG+RYIELF SSPEEM+RY
Sbjct: 151 VIRMRGLPYRASKADIMAFFKGCAVAEVG--FVARADGRVTGEAYVKFASRDDARQGLRRDRGMIGARYIELFASSPEEMSRY 231
BLAST of mRNA_Ecto-sp13_S_contig679.17719.1 vs. uniprot
Match: A0A7S3XZQ0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZQ0_HETAK) HSP 1 Score: 99.0 bits (245), Expect = 2.710e-24 Identity = 51/106 (48.11%), Postives = 72/106 (67.92%), Query Frame = 1
Query: 49 VPPATPAKTKGSAGDAKGTVIRMRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATR-EDAKMGLRKDREMIGSRYIELFTSSPEEMARYANS 363
VPP P GD + V+RMRGLPY+A++++V+ FF G + E+ V F DGR TG+AYV FA+ E + + K+REM+GSRY+ELF SS EEMAR++++
Sbjct: 7 VPPPAP-------GDGRAGVLRMRGLPYQANRADVLEFFNGYQVLEDSVVFPVGEDGRATGQAYVVFASAAESRRAAMEKNREMMGSRYVELFMSSQEEMARHSST 105
BLAST of mRNA_Ecto-sp13_S_contig679.17719.1 vs. uniprot
Match: A0A7S2V6E7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6E7_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 3.390e-24 Identity = 44/82 (53.66%), Postives = 63/82 (76.83%), Query Frame = 1
Query: 106 VIRMRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEMAR 351
++R+RGLP+ ASK++V+ FF G I E+ + FV RADGRVTGE+YV+F + + AK + +DR +IGSRY+ELF S+P+E R
Sbjct: 26 ILRLRGLPFSASKADVLHFFDGYEIVEDSIEFVVRADGRVTGESYVQFTSPDAAKAAMARDRNVIGSRYVELFISTPDEYQR 107
BLAST of mRNA_Ecto-sp13_S_contig679.17719.1 vs. uniprot
Match: A0A7S1TWY6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TWY6_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 7.330e-22 Identity = 45/81 (55.56%), Postives = 59/81 (72.84%), Query Frame = 1
Query: 109 IRMRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEMAR 351
+R+RGLP+ A+ +V+ FF + +GV FV RADG+VTGEAYV F++ E AK + DR+ IGSRYIELF SSP+E AR
Sbjct: 25 LRLRGLPFSATAEDVVGFFGDFEVVADGVKFVLRADGKVTGEAYVTFSSAEQAKDAMVMDRQSIGSRYIELFPSSPQEAAR 105
BLAST of mRNA_Ecto-sp13_S_contig679.17719.1 vs. uniprot
Match: A0A7N0TIK1_KALFE (RRM domain-containing protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0TIK1_KALFE) HSP 1 Score: 96.7 bits (239), Expect = 1.200e-21 Identity = 44/88 (50.00%), Postives = 65/88 (73.86%), Query Frame = 1
Query: 106 VIRMRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEMARYANSKR 369
V+RMRGLPY ASK +++ FFK ++ E+ + FV +GR +G+A+V+FA+ ED+K + KDR +GSRY+ELF S+PEEM+R + R
Sbjct: 189 VLRMRGLPYSASKDDIVNFFKDFTLSEDAIHFVLNWEGRPSGDAFVKFASAEDSKAAMVKDRMSVGSRYVELFPSTPEEMSRALSKAR 276
BLAST of mRNA_Ecto-sp13_S_contig679.17719.1 vs. uniprot
Match: A0A7I8J173_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8J173_SPIIN) HSP 1 Score: 94.7 bits (234), Expect = 2.160e-21 Identity = 41/82 (50.00%), Postives = 61/82 (74.39%), Query Frame = 1
Query: 106 VIRMRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEMAR 351
++++RGLP+ AS+++++ FF G +PE+ V RADG+ TGEA+V F + E+AK + KDR IGSRY+ELF S+PEE +R
Sbjct: 131 ILKLRGLPFSASRADIVDFFAGFDLPEDKVHIALRADGKATGEAFVEFPSSEEAKRAMNKDRMTIGSRYVELFPSTPEEASR 212
BLAST of mRNA_Ecto-sp13_S_contig679.17719.1 vs. uniprot
Match: A0A5K1CJV8_9MAGN (RRM domain-containing protein (Fragment) n=2 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1CJV8_9MAGN) HSP 1 Score: 95.1 bits (235), Expect = 2.520e-21 Identity = 42/88 (47.73%), Postives = 63/88 (71.59%), Query Frame = 1
Query: 106 VIRMRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEMARYANSKR 369
++++RGLPY +KSE++ FFK + E + +R DG+ TGEA+V FA+ D+K + KD+ MIGSRY+ELF S+PEE++R A+ R
Sbjct: 155 ILKLRGLPYSVTKSEIIDFFKDFELTEANIHIASRYDGKATGEAFVEFASASDSKKAMCKDKMMIGSRYVELFPSTPEELSRAASRSR 242
BLAST of mRNA_Ecto-sp13_S_contig679.17719.1 vs. uniprot
Match: A0A6U4CVK5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CVK5_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 2.570e-21 Identity = 43/82 (52.44%), Postives = 60/82 (73.17%), Query Frame = 1
Query: 103 TVIRMRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEMA 348
TV+RMRGLP+ AS+S+V+ FF+ + E+ + F TR+DGRVTGEAYV F + A L++DR +G+RY+ELF SS +E A
Sbjct: 15 TVLRMRGLPFSASRSDVVGFFRDLEVIEDSIKFATRSDGRVTGEAYVEFDSPATAAEALKRDRCTMGNRYVELFMSSRQEAA 96 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig679.17719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig679.17719.1 >prot_Ecto-sp13_S_contig679.17719.1 ID=prot_Ecto-sp13_S_contig679.17719.1|Name=mRNA_Ecto-sp13_S_contig679.17719.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp MRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDback to top mRNA from alignment at Ecto-sp13_S_contig679:5392..6369- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig679.17719.1 ID=mRNA_Ecto-sp13_S_contig679.17719.1|Name=mRNA_Ecto-sp13_S_contig679.17719.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=978bp|location=Sequence derived from alignment at Ecto-sp13_S_contig679:5392..6369- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig679:5392..6369- >mRNA_Ecto-sp13_S_contig679.17719.1 ID=mRNA_Ecto-sp13_S_contig679.17719.1|Name=mRNA_Ecto-sp13_S_contig679.17719.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig679:5392..6369- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |