mRNA_Ecto-sp13_S_contig679.17718.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig679.17718.1
Unique NamemRNA_Ecto-sp13_S_contig679.17718.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig679.17718.1 vs. uniprot
Match: A0A6H5KF19_9PHAE (Mitochondrial import inner membrane translocase subunit TIM22 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KF19_9PHAE)

HSP 1 Score: 242 bits (618), Expect = 4.310e-80
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1
Query:    1 GAGMGFVFGLFLGAMGDMQPLQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLMGH 366
            GAGMGFVFGLFLGAMGDMQPLQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLMGH
Sbjct:   71 GAGMGFVFGLFLGAMGDMQPLQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLMGH 192          
BLAST of mRNA_Ecto-sp13_S_contig679.17718.1 vs. uniprot
Match: A0A836C710_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C710_9STRA)

HSP 1 Score: 177 bits (450), Expect = 1.950e-54
Identity = 89/122 (72.95%), Postives = 100/122 (81.97%), Query Frame = 1
Query:    1 GAGMGFVFGLFLGAMGDMQPLQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLMGH 366
            G GMG +FG+FLGAMGDMQP+Q+INGREVPQAP  EQAR AY  T  RSL M +NFASFSAIFM SECVIEKMRGK DMMNSVY GC TG AFG+K GP+ A  GC+GMA FSA++D +MGH
Sbjct:   78 GFGMGLLFGMFLGAMGDMQPIQVINGREVPQAPLGEQARAAYLGTKSRSLGMAKNFASFSAIFMASECVIEKMRGKHDMMNSVYGGCITGMAFGIKAGPKEAVGGCLGMAAFSAVIDAVMGH 199          
BLAST of mRNA_Ecto-sp13_S_contig679.17718.1 vs. uniprot
Match: A0A7S2P255_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P255_9STRA)

HSP 1 Score: 134 bits (337), Expect = 4.660e-37
Identity = 67/123 (54.47%), Postives = 86/123 (69.92%), Query Frame = 1
Query:    1 GAGMGFVFGLFLGAMGDMQP-LQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLMGH 366
            GA MG + G+FLGAM DM P + +ING+EVPQAP +EQAR   + T ++ +   RNFA  + +F GSEC++EK RGK D+ N V +GC TGAA   KQGPQAA  GC G A FS ++D +MGH
Sbjct:   98 GAAMGLLMGVFLGAMSDMTPPVTVINGKEVPQAPLKEQARTVMRATGEKCVYWSRNFAFITGVFAGSECLVEKARGKHDVWNQVLSGCVTGAAIQAKQGPQAAALGCGGFAAFSLVIDAVMGH 220          
BLAST of mRNA_Ecto-sp13_S_contig679.17718.1 vs. uniprot
Match: A0A7S1TYW7_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYW7_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.360e-35
Identity = 64/123 (52.03%), Postives = 81/123 (65.85%), Query Frame = 1
Query:    1 GAGMGFVFGLFLGAMGDMQP-LQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLMGH 366
            G  MG V G+FLGAMGD+ P +  + G+E PQ P  EQAR AY+ TA+RS+   R+F + +A+F G+ECVIEK RG+ D  N V +GCA GA      GP AAC GC G A FSA  + +MGH
Sbjct:   69 GGAMGLVLGVFLGAMGDLNPPIYFVKGKEAPQPPLAEQARTAYRTTAERSIGFARSFFALTALFSGTECVIEKFRGRHDGWNPVLSGCAAGAMMSASGGPTAACMGCAGFAAFSAAAEAVMGH 191          
BLAST of mRNA_Ecto-sp13_S_contig679.17718.1 vs. uniprot
Match: A0A7S3VGZ9_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VGZ9_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.870e-34
Identity = 65/118 (55.08%), Postives = 83/118 (70.34%), Query Frame = 1
Query:   13 GFVFGLFLGAMGDMQP-LQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLMG 363
            G V G+FLGAM DM P + +ING+EVPQAP REQ R   + T ++SL   RNFA  + +F G++C++EK RG  D+ NSV +GC TGAA   KQGPQAA  GC G A FS ++DK+MG
Sbjct:  118 GLVMGVFLGAMSDMTPPVTIINGKEVPQAPLREQMRTTLRATGEKSLYWARNFAFITGVFGGTDCLVEKYRGTHDVWNSVISGCVTGAAMQAKQGPQAAAIGCGGFAAFSLVIDKVMG 235          
BLAST of mRNA_Ecto-sp13_S_contig679.17718.1 vs. uniprot
Match: A0A1Z5K7I7_FISSO (Mitochondrial import inner membrane translocase subunit TIM22 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7I7_FISSO)

HSP 1 Score: 128 bits (322), Expect = 2.520e-34
Identity = 66/123 (53.66%), Postives = 84/123 (68.29%), Query Frame = 1
Query:    1 GAGMGFVFGLFLGAMGDMQP-LQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLMGH 366
            GAGMG + GLFLGA+ D  P +Q+I GR+VPQAP REQ R+  + TA++S     NFA  + +F GSEC++EK RGK D+ NSV +GC TGAA   K GPQ+A  GC G A FS ++D  M H
Sbjct:  141 GAGMGALMGLFLGALSDTTPPVQVIGGRDVPQAPLREQMRVVMRATAEKSRYWAGNFAFITGVFAGSECLVEKYRGKNDLWNSVASGCITGAAMQAKAGPQSAALGCGGFAAFSLVIDSFMHH 263          
BLAST of mRNA_Ecto-sp13_S_contig679.17718.1 vs. uniprot
Match: A0A448Z601_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z601_9STRA)

HSP 1 Score: 128 bits (321), Expect = 4.410e-34
Identity = 65/123 (52.85%), Postives = 86/123 (69.92%), Query Frame = 1
Query:    1 GAGMGFVFGLFLGAMGDMQP-LQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLMGH 366
            G  MG + G+FLGA+ D QP +Q+  G++VPQAPF+EQAR   + TA++S+   RNFA  + +F GSEC++EK RGK DM N V +GC TGAA     GPQAA  GC G A FS ++DK+MG+
Sbjct:  148 GGVMGLLMGVFLGALSDSQPPIQVAGGKDVPQAPFKEQARYTMRATAEKSMYWCRNFAFITGVFGGSECLVEKFRGKHDMWNPVVSGCITGAALQAHAGPQAAAVGCGGFAAFSIVIDKIMGN 270          
BLAST of mRNA_Ecto-sp13_S_contig679.17718.1 vs. uniprot
Match: B7FQ85_PHATC (Mitochondrial import inner membrane translocase subunit TIM22 (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQ85_PHATC)

HSP 1 Score: 123 bits (309), Expect = 7.410e-34
Identity = 66/121 (54.55%), Postives = 82/121 (67.77%), Query Frame = 1
Query:    1 GAGMGFVFGLFLGAMGDMQP-LQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLM 360
            G  MG + G+FLGAM D  P +Q+I GREVPQAP REQ ++  + T D+SL   RNFA  + +F GSEC++EK RGK D+ NSV +GC TGAA   K GPQAA  GC G A FS ++D  M
Sbjct:   16 GGVMGLLMGVFLGAMSDATPPVQVIAGREVPQAPLREQIKVTMRATGDKSLYWCRNFAFITGVFGGSECLVEKYRGKHDVWNSVASGCITGAALQAKSGPQAAAVGCGGFAAFSLVIDTFM 136          
BLAST of mRNA_Ecto-sp13_S_contig679.17718.1 vs. uniprot
Match: A0A1E7EXB6_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EXB6_9STRA)

HSP 1 Score: 123 bits (308), Expect = 9.910e-34
Identity = 62/118 (52.54%), Postives = 80/118 (67.80%), Query Frame = 1
Query:   10 MGFVFGLFLGAMGDMQP-LQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLM 360
            MG + G+FLGA+ D  P +Q + GR+VPQAPF+EQ R   + TA++S+   RNFA  + +F GSEC++EK RGK DM N V +GC TGAA   K GPQAA  GC G A FS ++D  M
Sbjct:   17 MGLLMGVFLGALSDSSPPIQAVGGRDVPQAPFKEQVRFTMRATAEKSMYWCRNFAFITGVFGGSECLVEKFRGKHDMWNPVVSGCITGAALQAKAGPQAAAVGCGGFAAFSIVIDSFM 134          
BLAST of mRNA_Ecto-sp13_S_contig679.17718.1 vs. uniprot
Match: K0TBX0_THAOC (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TBX0_THAOC)

HSP 1 Score: 125 bits (314), Expect = 2.640e-33
Identity = 66/122 (54.10%), Postives = 83/122 (68.03%), Query Frame = 1
Query:    1 GAGMGFVFGLFLGAMGDMQP-LQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLMG 363
            G  MG V G+FLGA+ DM P + +I G+EVPQAP +EQ R   + TAD+SL   R FA  + +F GSEC++EK RGK D+ NSV +GC TGAA   KQGPQA+  GC G A FS ++D  MG
Sbjct:  122 GGAMGLVMGVFLGALTDMTPPVTIIEGKEVPQAPLKEQMRTTLRATADKSLYWCRQFAFITGVFGGSECLVEKYRGKHDVWNSVVSGCITGAAMQAKQGPQASAAGCGGFAVFSLVIDSFMG 243          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig679.17718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KF19_9PHAE4.310e-80100.00Mitochondrial import inner membrane translocase su... [more]
A0A836C710_9STRA1.950e-5472.95Mitochondrial import inner membrane translocase su... [more]
A0A7S2P255_9STRA4.660e-3754.47Mitochondrial import inner membrane translocase su... [more]
A0A7S1TYW7_9STRA1.360e-3552.03Mitochondrial import inner membrane translocase su... [more]
A0A7S3VGZ9_9STRA1.870e-3455.08Mitochondrial import inner membrane translocase su... [more]
A0A1Z5K7I7_FISSO2.520e-3453.66Mitochondrial import inner membrane translocase su... [more]
A0A448Z601_9STRA4.410e-3452.85Mitochondrial import inner membrane translocase su... [more]
B7FQ85_PHATC7.410e-3454.55Mitochondrial import inner membrane translocase su... [more]
A0A1E7EXB6_9STRA9.910e-3452.54Mitochondrial import inner membrane translocase su... [more]
K0TBX0_THAOC2.640e-3354.10Mitochondrial import inner membrane translocase su... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig679contigEcto-sp13_S_contig679:2336..3517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score241.5
Seed ortholog evalue2e-61
Seed eggNOG ortholog2880.D7G569
Preferred nameTIMM22
Model size369
KEGG rclassRC00017
KEGG koko:K01094,ko:K17790
KEGG TC3.A.8.1
KEGG ReactionR02029
KEGG Pathwayko00564,ko01100,map00564,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005886,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009987,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019866,GO:0022804,GO:0022857,GO:0022884,GO:0030943,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0042277,GO:0042721,GO:0042886,GO:0042887,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072655,GO:0072657,GO:0090150,GO:0090151,GO:0098796,GO:0098798,GO:0098800,GO:1904680,GO:1990542
Exons3
EggNOG free text desc.Mitochondrial import inner membrane translocase subunit
EggNOG OGsCOG5596@1,KOG3225@2759
EC3.1.3.27
Cds size360
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463932.8164709-UTR-Ecto-sp13_S_contig679:2335..23441681463932.8164709-UTR-Ecto-sp13_S_contig679:2335..2344Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig679 2336..2344 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463932.8304222-CDS-Ecto-sp13_S_contig679:2344..24461681463932.8304222-CDS-Ecto-sp13_S_contig679:2344..2446Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig679 2345..2446 +
1681463932.8426082-CDS-Ecto-sp13_S_contig679:2637..27071681463932.8426082-CDS-Ecto-sp13_S_contig679:2637..2707Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig679 2638..2707 +
1681463932.8627458-CDS-Ecto-sp13_S_contig679:3329..35171681463932.8627458-CDS-Ecto-sp13_S_contig679:3329..3517Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig679 3330..3517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig679.17718.1prot_Ecto-sp13_S_contig679.17718.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig679 2345..3517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig679.17718.1

>prot_Ecto-sp13_S_contig679.17718.1 ID=prot_Ecto-sp13_S_contig679.17718.1|Name=mRNA_Ecto-sp13_S_contig679.17718.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=120bp
MGFVFGLFLGAMGDMQPLQMINGREVPQAPFREQARLAYKQTADRSLSMG
RNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAAC
FGCVGMATFSALMDKLMGH*
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mRNA from alignment at Ecto-sp13_S_contig679:2336..3517+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig679.17718.1 ID=mRNA_Ecto-sp13_S_contig679.17718.1|Name=mRNA_Ecto-sp13_S_contig679.17718.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1182bp|location=Sequence derived from alignment at Ecto-sp13_S_contig679:2336..3517+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGCAGGAATGGGCTTCGTGTTCGGTTTGTTCCTCGGGGCGATGGGCGA TATGCAGCCGTTACAGATGATCAACGGACGGGAGGTCCCTCAGGCACCGT TCAGAGAACAGGTAGAAACACCCCACCATTTGTATATATGCATTGTTGCG GCAGGAAGCGCTTGGTCGACTGCAACCATCCCGCACGCATGCATACGTGC TGGATACGTAGTGCCGCTTTCGTGCATTGGGACGAACTTCCACGCCCGCG CTCTCCCCTCCCCCGCCTGACGAACTTGCGATGTTGGCTTTGGCTGTGTC AGGCGCGACTGGCGTACAAGCAAACCGCGGACCGATCGCTTAGCATGGGG AGAAATTTTGCATCGTTTTCAGGTGTGTATTGTTTTCCCCATTCACATCT TGCACGCGACCAGATGTATTTACACGCAAGTACGCAGGTACAGCTGTAGT AGGATGACGCTTTCGTTGTGCTGCACTGATGCTATGGGAGATCGTACCGG CCCAGCGATCTATTCTGCACGTCGAGGTTATCGCCTCCAGAAGTCGGGGT GGTGGTCTCTTAGAAACCTACTGTAGTTGAGACGCGGCCCGTTTCACGGC GCTGACGACAGCGCTGCGCGAGCCTACTTTACTGCCGTTGTGAATGTGTG CCCCCCTTAGTGCTCTAGAGGAAGATTTACGTACTGTTGTAGCAGAGCTG TGCGCCGCTGGAGTTCCATGATTGGCTCAGGAAATAAGGCGATGCACTCC TTGCACCACATGAAGTGCGTGGTGGAGCTTCCTCCAGTGCACGGCATGCA GTGGCCGAGAATCGGCGCCGACCTCGAACAAGTAGCCGAAAGCAATAGCT GCCGAAACCACTCTTCGGCTTAAACAATCTTAACCCATTGAATCCAGCTT CTTGCTGCGCGTCGACGATGTCTGCCGTTGCTGTGTCTACCGTTTCTTTC GTGTTGATCATGCTTTTCACTCATGTGGGCCTGCCCCCCAAAAGCTATTT TTATGGGGTCGGAATGCGTCATCGAGAAAATGCGCGGCAAGACTGACATG ATGAACTCCGTCTACGCGGGGTGCGCGACAGGGGCGGCATTCGGCATGAA GCAAGGCCCGCAGGCGGCATGTTTCGGCTGCGTAGGGATGGCCACATTCT CTGCGCTCATGGATAAACTCATGGGGCACTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig679:2336..3517+

>mRNA_Ecto-sp13_S_contig679.17718.1 ID=mRNA_Ecto-sp13_S_contig679.17718.1|Name=mRNA_Ecto-sp13_S_contig679.17718.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=360bp|location=Sequence derived from alignment at Ecto-sp13_S_contig679:2336..3517+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCTTCGTGTTCGGTTTGTTCCTCGGGGCGATGGGCGATATGCAGCC
GTTACAGATGATCAACGGACGGGAGGTCCCTCAGGCACCGTTCAGAGAAC
AGGCGCGACTGGCGTACAAGCAAACCGCGGACCGATCGCTTAGCATGGGG
AGAAATTTTGCATCGTTTTCAGCTATTTTTATGGGGTCGGAATGCGTCAT
CGAGAAAATGCGCGGCAAGACTGACATGATGAACTCCGTCTACGCGGGGT
GCGCGACAGGGGCGGCATTCGGCATGAAGCAAGGCCCGCAGGCGGCATGT
TTCGGCTGCGTAGGGATGGCCACATTCTCTGCGCTCATGGATAAACTCAT
GGGGCACTAA
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