mRNA_Ecto-sp13_S_contig679.17718.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig679.17718.1 vs. uniprot
Match: A0A6H5KF19_9PHAE (Mitochondrial import inner membrane translocase subunit TIM22 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KF19_9PHAE) HSP 1 Score: 242 bits (618), Expect = 4.310e-80 Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1
Query: 1 GAGMGFVFGLFLGAMGDMQPLQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLMGH 366
GAGMGFVFGLFLGAMGDMQPLQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLMGH
Sbjct: 71 GAGMGFVFGLFLGAMGDMQPLQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLMGH 192
BLAST of mRNA_Ecto-sp13_S_contig679.17718.1 vs. uniprot
Match: A0A836C710_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C710_9STRA) HSP 1 Score: 177 bits (450), Expect = 1.950e-54 Identity = 89/122 (72.95%), Postives = 100/122 (81.97%), Query Frame = 1
Query: 1 GAGMGFVFGLFLGAMGDMQPLQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLMGH 366
G GMG +FG+FLGAMGDMQP+Q+INGREVPQAP EQAR AY T RSL M +NFASFSAIFM SECVIEKMRGK DMMNSVY GC TG AFG+K GP+ A GC+GMA FSA++D +MGH
Sbjct: 78 GFGMGLLFGMFLGAMGDMQPIQVINGREVPQAPLGEQARAAYLGTKSRSLGMAKNFASFSAIFMASECVIEKMRGKHDMMNSVYGGCITGMAFGIKAGPKEAVGGCLGMAAFSAVIDAVMGH 199
BLAST of mRNA_Ecto-sp13_S_contig679.17718.1 vs. uniprot
Match: A0A7S2P255_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P255_9STRA) HSP 1 Score: 134 bits (337), Expect = 4.660e-37 Identity = 67/123 (54.47%), Postives = 86/123 (69.92%), Query Frame = 1
Query: 1 GAGMGFVFGLFLGAMGDMQP-LQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLMGH 366
GA MG + G+FLGAM DM P + +ING+EVPQAP +EQAR + T ++ + RNFA + +F GSEC++EK RGK D+ N V +GC TGAA KQGPQAA GC G A FS ++D +MGH
Sbjct: 98 GAAMGLLMGVFLGAMSDMTPPVTVINGKEVPQAPLKEQARTVMRATGEKCVYWSRNFAFITGVFAGSECLVEKARGKHDVWNQVLSGCVTGAAIQAKQGPQAAALGCGGFAAFSLVIDAVMGH 220
BLAST of mRNA_Ecto-sp13_S_contig679.17718.1 vs. uniprot
Match: A0A7S1TYW7_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYW7_9STRA) HSP 1 Score: 129 bits (325), Expect = 1.360e-35 Identity = 64/123 (52.03%), Postives = 81/123 (65.85%), Query Frame = 1
Query: 1 GAGMGFVFGLFLGAMGDMQP-LQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLMGH 366
G MG V G+FLGAMGD+ P + + G+E PQ P EQAR AY+ TA+RS+ R+F + +A+F G+ECVIEK RG+ D N V +GCA GA GP AAC GC G A FSA + +MGH
Sbjct: 69 GGAMGLVLGVFLGAMGDLNPPIYFVKGKEAPQPPLAEQARTAYRTTAERSIGFARSFFALTALFSGTECVIEKFRGRHDGWNPVLSGCAAGAMMSASGGPTAACMGCAGFAAFSAAAEAVMGH 191
BLAST of mRNA_Ecto-sp13_S_contig679.17718.1 vs. uniprot
Match: A0A7S3VGZ9_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VGZ9_9STRA) HSP 1 Score: 128 bits (321), Expect = 1.870e-34 Identity = 65/118 (55.08%), Postives = 83/118 (70.34%), Query Frame = 1
Query: 13 GFVFGLFLGAMGDMQP-LQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLMG 363
G V G+FLGAM DM P + +ING+EVPQAP REQ R + T ++SL RNFA + +F G++C++EK RG D+ NSV +GC TGAA KQGPQAA GC G A FS ++DK+MG
Sbjct: 118 GLVMGVFLGAMSDMTPPVTIINGKEVPQAPLREQMRTTLRATGEKSLYWARNFAFITGVFGGTDCLVEKYRGTHDVWNSVISGCVTGAAMQAKQGPQAAAIGCGGFAAFSLVIDKVMG 235
BLAST of mRNA_Ecto-sp13_S_contig679.17718.1 vs. uniprot
Match: A0A1Z5K7I7_FISSO (Mitochondrial import inner membrane translocase subunit TIM22 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7I7_FISSO) HSP 1 Score: 128 bits (322), Expect = 2.520e-34 Identity = 66/123 (53.66%), Postives = 84/123 (68.29%), Query Frame = 1
Query: 1 GAGMGFVFGLFLGAMGDMQP-LQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLMGH 366
GAGMG + GLFLGA+ D P +Q+I GR+VPQAP REQ R+ + TA++S NFA + +F GSEC++EK RGK D+ NSV +GC TGAA K GPQ+A GC G A FS ++D M H
Sbjct: 141 GAGMGALMGLFLGALSDTTPPVQVIGGRDVPQAPLREQMRVVMRATAEKSRYWAGNFAFITGVFAGSECLVEKYRGKNDLWNSVASGCITGAAMQAKAGPQSAALGCGGFAAFSLVIDSFMHH 263
BLAST of mRNA_Ecto-sp13_S_contig679.17718.1 vs. uniprot
Match: A0A448Z601_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z601_9STRA) HSP 1 Score: 128 bits (321), Expect = 4.410e-34 Identity = 65/123 (52.85%), Postives = 86/123 (69.92%), Query Frame = 1
Query: 1 GAGMGFVFGLFLGAMGDMQP-LQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLMGH 366
G MG + G+FLGA+ D QP +Q+ G++VPQAPF+EQAR + TA++S+ RNFA + +F GSEC++EK RGK DM N V +GC TGAA GPQAA GC G A FS ++DK+MG+
Sbjct: 148 GGVMGLLMGVFLGALSDSQPPIQVAGGKDVPQAPFKEQARYTMRATAEKSMYWCRNFAFITGVFGGSECLVEKFRGKHDMWNPVVSGCITGAALQAHAGPQAAAVGCGGFAAFSIVIDKIMGN 270
BLAST of mRNA_Ecto-sp13_S_contig679.17718.1 vs. uniprot
Match: B7FQ85_PHATC (Mitochondrial import inner membrane translocase subunit TIM22 (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQ85_PHATC) HSP 1 Score: 123 bits (309), Expect = 7.410e-34 Identity = 66/121 (54.55%), Postives = 82/121 (67.77%), Query Frame = 1
Query: 1 GAGMGFVFGLFLGAMGDMQP-LQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLM 360
G MG + G+FLGAM D P +Q+I GREVPQAP REQ ++ + T D+SL RNFA + +F GSEC++EK RGK D+ NSV +GC TGAA K GPQAA GC G A FS ++D M
Sbjct: 16 GGVMGLLMGVFLGAMSDATPPVQVIAGREVPQAPLREQIKVTMRATGDKSLYWCRNFAFITGVFGGSECLVEKYRGKHDVWNSVASGCITGAALQAKSGPQAAAVGCGGFAAFSLVIDTFM 136
BLAST of mRNA_Ecto-sp13_S_contig679.17718.1 vs. uniprot
Match: A0A1E7EXB6_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EXB6_9STRA) HSP 1 Score: 123 bits (308), Expect = 9.910e-34 Identity = 62/118 (52.54%), Postives = 80/118 (67.80%), Query Frame = 1
Query: 10 MGFVFGLFLGAMGDMQP-LQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLM 360
MG + G+FLGA+ D P +Q + GR+VPQAPF+EQ R + TA++S+ RNFA + +F GSEC++EK RGK DM N V +GC TGAA K GPQAA GC G A FS ++D M
Sbjct: 17 MGLLMGVFLGALSDSSPPIQAVGGRDVPQAPFKEQVRFTMRATAEKSMYWCRNFAFITGVFGGSECLVEKFRGKHDMWNPVVSGCITGAALQAKAGPQAAAVGCGGFAAFSIVIDSFM 134
BLAST of mRNA_Ecto-sp13_S_contig679.17718.1 vs. uniprot
Match: K0TBX0_THAOC (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TBX0_THAOC) HSP 1 Score: 125 bits (314), Expect = 2.640e-33 Identity = 66/122 (54.10%), Postives = 83/122 (68.03%), Query Frame = 1
Query: 1 GAGMGFVFGLFLGAMGDMQP-LQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLMG 363
G MG V G+FLGA+ DM P + +I G+EVPQAP +EQ R + TAD+SL R FA + +F GSEC++EK RGK D+ NSV +GC TGAA KQGPQA+ GC G A FS ++D MG
Sbjct: 122 GGAMGLVMGVFLGALTDMTPPVTIIEGKEVPQAPLKEQMRTTLRATADKSLYWCRQFAFITGVFGGSECLVEKYRGKHDVWNSVVSGCITGAAMQAKQGPQASAAGCGGFAVFSLVIDSFMG 243 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig679.17718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig679.17718.1 >prot_Ecto-sp13_S_contig679.17718.1 ID=prot_Ecto-sp13_S_contig679.17718.1|Name=mRNA_Ecto-sp13_S_contig679.17718.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=120bp MGFVFGLFLGAMGDMQPLQMINGREVPQAPFREQARLAYKQTADRSLSMGback to top mRNA from alignment at Ecto-sp13_S_contig679:2336..3517+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig679.17718.1 ID=mRNA_Ecto-sp13_S_contig679.17718.1|Name=mRNA_Ecto-sp13_S_contig679.17718.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1182bp|location=Sequence derived from alignment at Ecto-sp13_S_contig679:2336..3517+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig679:2336..3517+ >mRNA_Ecto-sp13_S_contig679.17718.1 ID=mRNA_Ecto-sp13_S_contig679.17718.1|Name=mRNA_Ecto-sp13_S_contig679.17718.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=360bp|location=Sequence derived from alignment at Ecto-sp13_S_contig679:2336..3517+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |