mRNA_Ecto-sp13_S_contig67837.17711.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig67837.17711.1
Unique NamemRNA_Ecto-sp13_S_contig67837.17711.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig67837.17711.1 vs. uniprot
Match: A0A6H5K1R5_9PHAE (PNPLA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R5_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 6.610e-25
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 1
Query:   16 MASGTLREWLGEGPFSLALSSSWLGLWCHAGVVCALVESGLSPAKVSGSS 165
            MASGTLREWLG+GPFSLALSSSWLGLWCHAGVVCALVESGLSPAKVSGSS
Sbjct:    1 MASGTLREWLGKGPFSLALSSSWLGLWCHAGVVCALVESGLSPAKVSGSS 50          
BLAST of mRNA_Ecto-sp13_S_contig67837.17711.1 vs. uniprot
Match: A0A4Q6EC83_9PROT (Patatin (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4Q6EC83_9PROT)

HSP 1 Score: 67.8 bits (164), Expect = 2.430e-13
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 1
Query:   22 SGTLREWLGEGPFSLALSSSWLGLWCHAGVVCALVESGLSPAKVSGSS 165
            SG LR+WLGEGPF+LALSSS+ G + H G+  AL E+GL PAKVSG+S
Sbjct:    9 SGHLRDWLGEGPFTLALSSSFFGFYAHCGIAAALFEAGLVPAKVSGAS 56          
BLAST of mRNA_Ecto-sp13_S_contig67837.17711.1 vs. uniprot
Match: A0A813I6K8_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813I6K8_POLGL)

HSP 1 Score: 59.3 bits (142), Expect = 6.280e-9
Identity = 29/54 (53.70%), Postives = 42/54 (77.78%), Query Frame = 1
Query:    4 SKTGMASGTLREWLGEGPFSLALSSSWLGLWCHAGVVCALVESGLSPAKVSGSS 165
            S++  A  TL+EWL EGPF+L LSSS+ G + HAG++ AL+E+G+ P+ V+GSS
Sbjct:   29 SESTSAERTLQEWLLEGPFTLVLSSSFFGFYAHAGLLTALLEAGVVPSAVAGSS 82          
BLAST of mRNA_Ecto-sp13_S_contig67837.17711.1 vs. uniprot
Match: A0A7S3XKZ4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKZ4_HETAK)

HSP 1 Score: 58.2 bits (139), Expect = 1.640e-8
Identity = 26/46 (56.52%), Postives = 36/46 (78.26%), Query Frame = 1
Query:   28 TLREWLGEGPFSLALSSSWLGLWCHAGVVCALVESGLSPAKVSGSS 165
            TLR+WL E PF+L LSSS+ G + H G++ AL+E GL P+K++GSS
Sbjct:   15 TLRQWLSEKPFTLTLSSSFFGFYAHTGLLRALIEEGLEPSKLTGSS 60          
BLAST of mRNA_Ecto-sp13_S_contig67837.17711.1 vs. uniprot
Match: A0A521TXX2_9DELT (Patatin n=1 Tax=Myxococcaceae bacterium TaxID=2484252 RepID=A0A521TXX2_9DELT)

HSP 1 Score: 57.8 bits (138), Expect = 1.690e-8
Identity = 27/50 (54.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:   16 MASGTLREWLGEGPFSLALSSSWLGLWCHAGVVCALVESGLSPAKVSGSS 165
            M++ TLR WL EGPF+LA+SS + G + HAG + ALV++G SP   +GSS
Sbjct:    1 MSTPTLRAWLHEGPFTLAMSSGFFGFYVHAGALTALVDAGFSPEAATGSS 50          
BLAST of mRNA_Ecto-sp13_S_contig67837.17711.1 vs. uniprot
Match: A0A0F6SGK1_9DELT (PNPLA domain-containing protein n=2 Tax=Sandaracinus amylolyticus TaxID=927083 RepID=A0A0F6SGK1_9DELT)

HSP 1 Score: 56.6 bits (135), Expect = 4.580e-8
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 1
Query:   28 TLREWLGEGPFSLALSSSWLGLWCHAGVVCALVESGLSPAKVSGSS 165
            TLREWL EGPF+LA+SS + G + H GV+  L + GL P++ SGSS
Sbjct:    7 TLREWLHEGPFALAMSSGFFGFFAHTGVLSVLEDEGLVPSRASGSS 52          
BLAST of mRNA_Ecto-sp13_S_contig67837.17711.1 vs. uniprot
Match: A0A2D5QR51_9DELT (Patatin n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2D5QR51_9DELT)

HSP 1 Score: 55.8 bits (133), Expect = 9.720e-8
Identity = 29/55 (52.73%), Postives = 37/55 (67.27%), Query Frame = 1
Query:    1 LSKTGMASGTLREWLGEGPFSLALSSSWLGLWCHAGVVCALVESGLSPAKVSGSS 165
            LS+   ++ TLR WL + PFSLALSS + G + HAGVV AL   GL P ++ GSS
Sbjct:   14 LSEAHSSNLTLRTWLNQAPFSLALSSGFFGFFAHAGVVSALEMEGLKPQRLMGSS 68          
BLAST of mRNA_Ecto-sp13_S_contig67837.17711.1 vs. uniprot
Match: B5JSH1_9GAMM (Phospholipase, patatin family n=1 Tax=gamma proteobacterium HTCC5015 TaxID=391615 RepID=B5JSH1_9GAMM)

HSP 1 Score: 54.3 bits (129), Expect = 3.220e-7
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   22 SGTLREWLGEGPFSLALSSSWLGLWCHAGVVCALVESGLSPAKVSGSS 165
            S TL++WL E PF+L LSS +   + H G+  AL ESGL PAK+SGSS
Sbjct:    2 SQTLQQWLSEKPFTLCLSSGFFSFYAHLGLWAALEESGLKPAKLSGSS 49          
BLAST of mRNA_Ecto-sp13_S_contig67837.17711.1 vs. uniprot
Match: UPI001FEB32FD (patatin-like phospholipase family protein n=1 Tax=Pleionea sediminis TaxID=2569479 RepID=UPI001FEB32FD)

HSP 1 Score: 53.1 bits (126), Expect = 8.340e-7
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 1
Query:   28 TLREWLGEGPFSLALSSSWLGLWCHAGVVCALVESGLSPAKVSGSS 165
            TL  WL E PF+L +SS + G + HAGV+ AL E  L PAKV+GSS
Sbjct:    2 TLHNWLQEKPFTLTMSSGFFGFFAHAGVLSALAEHNLFPAKVTGSS 47          
BLAST of mRNA_Ecto-sp13_S_contig67837.17711.1 vs. uniprot
Match: A0A2N8LY58_9GAMM (PNPLA domain-containing protein n=5 Tax=Alcanivoracaceae TaxID=224372 RepID=A0A2N8LY58_9GAMM)

HSP 1 Score: 51.6 bits (122), Expect = 3.040e-6
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   22 SGTLREWLGEGPFSLALSSSWLGLWCHAGVVCALVESGLSPAKVSGSS 165
            S TL +WL   PF+LA+SS + G + H GVV AL E GL+PA++ GSS
Sbjct:    5 SQTLADWLAAKPFTLAMSSGFFGFFAHFGVVKALQEHGLTPARLCGSS 52          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig67837.17711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5K1R5_9PHAE6.610e-2598.00PNPLA domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A4Q6EC83_9PROT2.430e-1366.67Patatin (Fragment) n=1 Tax=Proteobacteria bacteriu... [more]
A0A813I6K8_POLGL6.280e-953.70Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S3XKZ4_HETAK1.640e-856.52Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A521TXX2_9DELT1.690e-854.00Patatin n=1 Tax=Myxococcaceae bacterium TaxID=2484... [more]
A0A0F6SGK1_9DELT4.580e-856.52PNPLA domain-containing protein n=2 Tax=Sandaracin... [more]
A0A2D5QR51_9DELT9.720e-852.73Patatin n=1 Tax=Myxococcales bacterium TaxID=20267... [more]
B5JSH1_9GAMM3.220e-756.25Phospholipase, patatin family n=1 Tax=gamma proteo... [more]
UPI001FEB32FD8.340e-756.52patatin-like phospholipase family protein n=1 Tax=... [more]
A0A2N8LY58_9GAMM3.040e-654.17PNPLA domain-containing protein n=5 Tax=Alcanivora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig67837contigEcto-sp13_S_contig67837:36..200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start1
Seed ortholog score62.8
Seed ortholog evalue5.3e-08
Seed eggNOG ortholog404589.Anae109_4233
Model size165
KEGG koko:K07001
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG free text desc.Patatin-like phospholipase
EggNOG OGs1RCDG@1224,2X4CS@28221,2YYRY@29,43963@68525,COG1752@1,COG1752@2
Cds size150
COG Functional cat.S
Best tax levelMyxococcales
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463932.3432713-CDS-Ecto-sp13_S_contig67837:35..1851681463932.3432713-CDS-Ecto-sp13_S_contig67837:35..185Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig67837 36..185 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463932.3574355-UTR-Ecto-sp13_S_contig67837:185..2001681463932.3574355-UTR-Ecto-sp13_S_contig67837:185..200Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig67837 186..200 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig67837.17711.1prot_Ecto-sp13_S_contig67837.17711.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig67837 36..185 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig67837.17711.1

>prot_Ecto-sp13_S_contig67837.17711.1 ID=prot_Ecto-sp13_S_contig67837.17711.1|Name=mRNA_Ecto-sp13_S_contig67837.17711.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
MASGTLREWLGEGPFSLALSSSWLGLWCHAGVVCALVESGLSPAKVSGSS
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mRNA from alignment at Ecto-sp13_S_contig67837:36..200-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig67837.17711.1 ID=mRNA_Ecto-sp13_S_contig67837.17711.1|Name=mRNA_Ecto-sp13_S_contig67837.17711.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67837:36..200- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTTCCAAAACAGGCATGGCATCAGGGACCCTGAGGGAGTGGCTAGGCGA GGGGCCATTTAGCCTTGCCCTGAGCTCAAGCTGGCTTGGGCTATGGTGCC ACGCTGGCGTTGTGTGCGCTTTGGTCGAGAGTGGGCTATCTCCCGCAAAA GTTTCGGGGAGCTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig67837:36..200-

>mRNA_Ecto-sp13_S_contig67837.17711.1 ID=mRNA_Ecto-sp13_S_contig67837.17711.1|Name=mRNA_Ecto-sp13_S_contig67837.17711.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67837:36..200- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCATCAGGGACCCTGAGGGAGTGGCTAGGCGAGGGGCCATTTAGCCT
TGCCCTGAGCTCAAGCTGGCTTGGGCTATGGTGCCACGCTGGCGTTGTGT
GCGCTTTGGTCGAGAGTGGGCTATCTCCCGCAAAAGTTTCGGGGAGCTCC
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