prot_Ecto-sp13_S_contig6780.17705.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6780.17705.1
Unique Nameprot_Ecto-sp13_S_contig6780.17705.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length667
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6780.17705.1 vs. uniprot
Match: A0A6H5KNL2_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNL2_9PHAE)

HSP 1 Score: 783 bits (2022), Expect = 1.440e-277
Identity = 567/641 (88.46%), Postives = 590/641 (92.04%), Query Frame = 0 
Query:    1 MKQRPQLGVSGCQAVTAIRDRKQRGRRGALHGSRATQQPAREGGRTAVTPXXXXXXXXXVLSPELCSGFTSGLSAVATRSCWAPSRRGVSVPSSQQHGREWHRCTGRGVDRSRSESGRSRRLQALAAETDSPNTNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP-QPPRGVSPSSGGRSVGVATAPRTQSAAPFSIESIASTLESGQSQTSTARGNXXXXXDQQQQQVWRDNSFDQRGRGDAAAVGLRSRNTEERGGKGADQEPGYDDGRNGFPGSRAGAASSARDPGVVGGGDTVGEEKSKGNPNKLSLRKRRAREXXRETPEEKQLQNEVALALKADSAEETLRSFNTAMEVGVALRANLLRGVLNQCAKAGLMDDCMRVVMEMKERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEQYVNYLCGLSIAGELWDYARSGKLDEKLLEMSYHARNLTMGQVEQLEEHFNAVPVAATPSIPINGDAGALGNTNAFAITEAVKSSVPLARRVKVAGGHEIDDDSWTREWSSRKPTRAERPDSCPACGGALRAVGLTDAERARIRETLFGLAGLQVKKHARSRRARVPCENSE 640
            M+QRPQLGVSGCQAVTAIR+RKQRGRRGALHGSRATQQ AREGGR+ VTPXXXXXXXXXVLSPELCSGFT+GLSAV TRSCWAPSRRGVS+PSSQQHGREWH CTGRGVDRSRSESGRSRRLQ +AAE+DSPN+N XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  QPP+GVSPSS GRSVG A APRTQSAAP SIESIAS LE GQSQTSTAR  XXXXX    QQVWRD+SFD+RGRGDAAA GLRSRNTEERG  GADQEPGY  GRNGFPG RAGAA++ RDPGVVGGGDTVGEEKSKGNPNKLSLRKRRAR XX ETPEEKQLQNE+ALALKADSAEE LRSFNTAME+GVALRANLLRGVLNQCAKAGL              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEQYVNYLCGLS+AGELWD ARSGKLDEKLL+MSYHARNLTMGQVEQLEEHFNAVP+AA PSIPINGDAGA+G+TNA AITE   SSVPLARRVKVAGGHEIDDDSWTREWSSRKPTRAERPDSCPACGGALRAVGLTD ERARIRETLFGLAGLQVKKHARSRRAR+PC++SE
Sbjct:    1 MEQRPQLGVSGCQAVTAIRERKQRGRRGALHGSRATQQSAREGGRS-VTPXXXXXXXXXVLSPELCSGFTTGLSAVTTRSCWAPSRRGVSMPSSQQHGREWHGCTGRGVDRSRSESGRSRRLQTVAAESDSPNSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVQPPQGVSPSSSGRSVGAAVAPRTQSAAPISIESIASLLERGQSQTSTARXXXXXXXXXXXQQVWRDDSFDKRGRGDAAAAGLRSRNTEERGAGGADQEPGYHGGRNGFPGGRAGAANAVRDPGVVGGGDTVGEEKSKGNPNKLSLRKRRARXXXXETPEEKQLQNEIALALKADSAEEALRSFNTAMEMGVALRANLLRGVLNQCAKAGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEQYVNYLCGLSVAGELWDNARSGKLDEKLLDMSYHARNLTMGQVEQLEEHFNAVPLAAAPSIPINGDAGAVGDTNACAITEI--SSVPLARRVKVAGGHEIDDDSWTREWSSRKPTRAERPDSCPACGGALRAVGLTDGERARIRETLFGLAGLQVKKHARSRRARIPCDSSE 638
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BLAST of mRNA_Ecto-sp13_S_contig6780.17705.1 vs. uniprot
Match: D8LN58_ECTSI (Ribonuclease P n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN58_ECTSI)

HSP 1 Score: 694 bits (1792), Expect = 1.530e-236
Identity = 497/555 (89.55%), Postives = 516/555 (92.97%), Query Frame = 0 
Query:   91 VPSSQQHGREWHRCTGRGVDRSRSESGRSRRLQALAAETDSPNTNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----PQPPRGVSPSSGGRSVGVATAPRTQSAAPFSIESIASTLESGQSQTSTARGNXXXXXDQQQQQVWRDNSFDQRGRGDAAAVGLRSRNTEERGGKGADQEPGYDDGRNGFPGSRAGAASSARDPGVVGGGDTVGEEKSKGNPNKLSLRKRRAREXXRETPEEKQLQNEVALALKADSAEETLRSFNTAMEVGVALRANLLRGVLNQCAKAGLMDDCMRVVMEMKERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEQYVNYLCGLSIAGELWDYARSGKLDEKLLEMSYHARNLTMGQVEQLEEHFNAVPVAATPSIPINGDAGALGNTNAFAITEAVKSSVPLARRVKVAGGHEIDDDSWTREWSSRKPTRAERPDSCPACGGALRAVGLTDAERARIRETLFGLAGLQVKKHARSRRARVPCENSER 641
            +PSSQQHGREWHRCTG GVDRSRS+SGRSRRLQA+A E+DSPNT  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    PQPP+GVSPSSGGRSVG A APRTQSAAP SIESIASTLESGQSQTS+AR N     DQQQQQVWRD+SFDQRGRGDAAA GLRSRNTEE G  G DQEPGYDDGRNGFPG RAG A++ARDPGVV GGD VGEE+SKGNPNKLSLRKRRARE  RETPEEKQLQNEVALALKADSAEETLRSFNTAME+GVALRANLLRGVLNQCAKAGLMDDCMRVVMEMK  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEQYVNYLCGLS+AGELWD ARSGKLDEKLLEMSYHARNLTMGQVEQLEEHFNAVP+AATPSIPINGDAGA+G+TNAFAITEAVKSSVPLARRVKVAGGHEIDDDSWTREWSSRKPTRAERP SCPACGGALRAVGLTD ERARIRETLFGLAGLQVKKHARSR  ++   + +R
Sbjct:    1 MPSSQQHGREWHRCTGCGVDRSRSDSGRSRRLQAVAEESDSPNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQPPQGVSPSSGGRSVGAAVAPRTQSAAPISIESIASTLESGQSQTSSARSNGNNPSDQQQQQVWRDSSFDQRGRGDAAAAGLRSRNTEEPGWVGDDQEPGYDDGRNGFPGGRAGVANAARDPGVVEGGDIVGEEQSKGNPNKLSLRKRRARERKRETPEEKQLQNEVALALKADSAEETLRSFNTAMEMGVALRANLLRGVLNQCAKAGLMDDCMRVVMEMKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEQYVNYLCGLSVAGELWDNARSGKLDEKLLEMSYHARNLTMGQVEQLEEHFNAVPLAATPSIPINGDAGAVGDTNAFAITEAVKSSVPLARRVKVAGGHEIDDDSWTREWSSRKPTRAERPHSCPACGGALRAVGLTDGERARIRETLFGLAGLQVKKHARSRHTKMLARSRQR 555
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6780.17705.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KNL2_9PHAE1.440e-27788.46PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
D8LN58_ECTSI1.530e-23689.55Ribonuclease P n=1 Tax=Ectocarpus siliculosus TaxI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 318..474
e-value: 1.8E-21
score: 76.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 399..430
e-value: 6.1E-5
score: 20.9
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 396..430
score: 9.997
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 361..395
score: 7.761
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 431..465
score: 9.416
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 326..526
e-value: 4.2E-25
score: 90.7
IPR033495Mitochondrial ribonuclease P catalytic subunitPANTHERPTHR13547:SF1MITOCHONDRIAL RIBONUCLEASE P CATALYTIC SUBUNITcoord: 302..628
NoneNo IPR availablePANTHERPTHR13547UNCHARACTERIZEDcoord: 302..628

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6780contigEcto-sp13_S_contig6780:928..7667 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6780.17705.1mRNA_Ecto-sp13_S_contig6780.17705.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6780 388..7667 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6780.17705.1 ID=prot_Ecto-sp13_S_contig6780.17705.1|Name=mRNA_Ecto-sp13_S_contig6780.17705.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=667bp
MKQRPQLGVSGCQAVTAIRDRKQRGRRGALHGSRATQQPAREGGRTAVTP
PPLLLLLLLVLSPELCSGFTSGLSAVATRSCWAPSRRGVSVPSSQQHGRE
WHRCTGRGVDRSRSESGRSRRLQALAAETDSPNTNRRRATQQQGQQRQPQ
QREPPMQQQQQQQRRQPQPPRGVSPSSGGRSVGVATAPRTQSAAPFSIES
IASTLESGQSQTSTARGNGNNPSDQQQQQVWRDNSFDQRGRGDAAAVGLR
SRNTEERGGKGADQEPGYDDGRNGFPGSRAGAASSARDPGVVGGGDTVGE
EKSKGNPNKLSLRKRRARERKRETPEEKQLQNEVALALKADSAEETLRSF
NTAMEVGVALRANLLRGVLNQCAKAGLMDDCMRVVMEMKERGMVIEENTY
VPLIRGMVSHGNCHDAFDLIKDMVNQGVQPRLRCYEPVIAEMCREGGTDA
AREVWEHMEQQGVIPREEQYVNYLCGLSIAGELWDYARSGKLDEKLLEMS
YHARNLTMGQVEQLEEHFNAVPVAATPSIPINGDAGALGNTNAFAITEAV
KSSVPLARRVKVAGGHEIDDDSWTREWSSRKPTRAERPDSCPACGGALRA
VGLTDAERARIRETLFGLAGLQVKKHARSRRARVPCENSERRYETRGSRQ
KIALISQTDESHPRST*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033443PPR_long
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
IPR033495MRPP3