mRNA_Ecto-sp13_S_contig6779.17701.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6779.17701.1 vs. uniprot
Match: A0A6H5JUA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA4_9PHAE) HSP 1 Score: 506 bits (1304), Expect = 2.210e-180 Identity = 249/257 (96.89%), Postives = 252/257 (98.05%), Query Frame = 1
Query: 1 TLSLYRGLLSPVVGYGAMFAVSFSAYGYAGRFLLRRREAKPTDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACIVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRASTAVPEPMLLALAGGLAGCAMWLPPTYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLGVRPRSSCSPTSVNTSLVKQVLE 771
TLSLYRGLLSPVVGYGAMFAVSFS+YGYAGRFLLRRREAK TD+LTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGAC+VDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDY LPPDR STAVPEPMLLALAGGLAGC MWLPPTYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLG RPRSSCSPTSVNTSLVKQVLE
Sbjct: 56 TLSLYRGLLSPVVGYGAMFAVSFSSYGYAGRFLLRRREAKATDELTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYLLPPDRTSTAVPEPMLLALAGGLAGCVMWLPPTYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLGARPRSSCSPTSVNTSLVKQVLE 312
BLAST of mRNA_Ecto-sp13_S_contig6779.17701.1 vs. uniprot
Match: D7FM07_ECTSI (Carnitine/acylcarnitine carrier protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM07_ECTSI) HSP 1 Score: 447 bits (1149), Expect = 6.040e-158 Identity = 218/226 (96.46%), Postives = 221/226 (97.79%), Query Frame = 1
Query: 94 FLLRRREAKPTDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACIVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRASTAVPEPMLLALAGGLAGCAMWLPPTYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLGVRPRSSCSPTSVNTSLVKQVLE 771
FLLRRREAK TDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGAC+VDLVRREG+AMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDR STAVPEP+LLALAGGLAGC MWLPP YCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLG RPRSSCSPTSVNTSLVKQVLE
Sbjct: 12 FLLRRREAKATDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGIAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRTSTAVPEPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLGARPRSSCSPTSVNTSLVKQVLE 237
BLAST of mRNA_Ecto-sp13_S_contig6779.17701.1 vs. uniprot
Match: D7FLY9_ECTSI (Carnitine/acylcarnitine carrier protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLY9_ECTSI) HSP 1 Score: 301 bits (772), Expect = 3.150e-100 Identity = 163/254 (64.17%), Postives = 185/254 (72.83%), Query Frame = 1
Query: 4 LSLYRGLLSPVVGYGAMFAVSFSAYGYAGRFLLRRREAKP----TDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACIVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRASTA----VPEPMLLALAGGLAGCAMWLPPTYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLGVRPRSSCSPTSV 741
+S YRGLLSPV GYGAMFAVSFS+YG A RFL R + ++ L EK AG +AG MN+P R VF+RVK VMQVR G +PYSWSGAC DLVRREGV GL RG+ +TMLRE LQ IYYPSYE+ KD R ST+ VPEP L LAGG+AGCA WLPP YCLDVIKTR+Q+AEPGVY G DCL KT+R+EG PVLFRGLG +MLRAFPMHGLVF+GYETTI LL R +C PT+V
Sbjct: 8 MSWYRGLLSPVAGYGAMFAVSFSSYGMASRFLQRXXXXXXXXXXSGEVFLWEKSAAGFFAGAMNSPFRTVFDRVKTVMQVRVGNGRAAPYSWSGACAADLVRREGVMSGLFRGIESTMLREMLQCAIYYPSYEVTKDLLA---RRSTSGKSSVPEPALQMLAGGIAGCATWLPPVYCLDVIKTRLQSAEPGVYGGTWDCLRKTVRSEGTPVLFRGLGLSMLRAFPMHGLVFVGYETTIGLLTTR--ENC-PTAV 255
BLAST of mRNA_Ecto-sp13_S_contig6779.17701.1 vs. uniprot
Match: A0A836C8G7_9STRA (Carnitine/acylcarnitine carrier protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8G7_9STRA) HSP 1 Score: 255 bits (651), Expect = 5.200e-82 Identity = 126/229 (55.02%), Postives = 160/229 (69.87%), Query Frame = 1
Query: 7 SLYRGLLSPVVGYGAMFAVSFSAYGYAGRFLLRRREAKPTDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACIVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRASTAVPEPMLLALAGGLAGCAMWLPPTYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTI 693
SLYRGL SPV+GYG +FA+SFSA G A R+L R ++ E +AGAWAG + AP RQVFERVKGVMQVR G ++PYSWSGAC+VDLVR EGV MGL RGMG+ +RE QF +YYP+Y++AK LP D + P+ + LAGG+AG WLPP Y +DV+KT++QTA PG Y+ + D KT+ EG LFRGLG +++RAFP+H +F GYE T+
Sbjct: 20 SLYRGLASPVLGYGVLFAMSFSANGQALRYLRNRDGRAANAPASVAEMTLAGAWAGAVQAPARQVFERVKGVMQVRNGAGGKAPYSWSGACLVDLVRTEGVQMGLFRGMGSQFIREVPQFALYYPAYDVAKRAILPADGHIS----PIHMLLAGGIAGTVQWLPPIYNIDVLKTKIQTAAPGTYKSIADAARKTVATEGTKGLFRGLGPSLVRAFPLHATIFAGYELTM 244
BLAST of mRNA_Ecto-sp13_S_contig6779.17701.1 vs. uniprot
Match: W7TE76_9STRA (Mitochondrial carrier family n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TE76_9STRA) HSP 1 Score: 229 bits (584), Expect = 1.470e-71 Identity = 126/254 (49.61%), Postives = 160/254 (62.99%), Query Frame = 1
Query: 7 SLYRGLLSPVVGYGAMFAVSFSAYGYAGRFLLRRREAKPTDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQ--GKKLQSPYSWSGACIVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEI---AKDYFLPPDRAS-----------------TAVPEPMLLALAGGLAGCAMWLPPTYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLL 702
SLYRGLLSP G+G FA+SF+ YG RF R+ +LTL E +GAWAG++ +P RQ+FER+K VMQVR+ G + PY WSG C+V LVR+EG+ GL RG+ AT LRE QF +YYP YE+ A + AS T +P P LL LAGG+AG WLPP YCLDV+K+RMQ+A PGVY V DC K+ + EG+ V FRGL A++RAFP++ +FLGYETT+ L
Sbjct: 9 SLYRGLLSPQAGFGVTFAISFAGYGQGTRFF---RKGDNKRELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSXNESNIVHRKPSSSTPLP-PHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAAL 258
BLAST of mRNA_Ecto-sp13_S_contig6779.17701.1 vs. uniprot
Match: K8Z8A3_NANGC (Mitochondrial carrier family n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z8A3_NANGC) HSP 1 Score: 188 bits (478), Expect = 2.250e-55 Identity = 108/235 (45.96%), Postives = 142/235 (60.43%), Query Frame = 1
Query: 7 SLYRGLLSPVVGYGAMFAVSFSAYGYAGRFLLRRREAKPTDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQ--GKKLQSPYSWSGACIVDL-VRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRASTAVPEPMLLALAGGLAGCAMWLPPTYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLL 702
SLYRGLLSP G+G FA+SF+ YG RF R+ +LTL E +GAWAG++ +P RQ+FER+K VMQVR+ G + PY WSG C+ ++ VR M G++ + PS +ST +P P LL LAGG+AG WLPP YCLDV+K+RMQ+A PGVY V DC K+ + EG+ V FRGL A++RAFP++ +FLGYETT+ L
Sbjct: 59 SLYRGLLSPQAGFGVTFAISFAGYGQGTRFF---RKGDNKRELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLYEMNVRALQKMMAASNASGSSSNESNIVHR--KPS-------------SSTPLP-PHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAAL 274
BLAST of mRNA_Ecto-sp13_S_contig6779.17701.1 vs. uniprot
Match: A0A482SEK8_9ARCH (MC/SLC25 family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEK8_9ARCH) HSP 1 Score: 161 bits (408), Expect = 7.370e-46 Identity = 85/187 (45.45%), Postives = 111/187 (59.36%), Query Frame = 1
Query: 67 FSAYGYAGRFLLRRREAKPTDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACIVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLP--PDRASTAVPEPMLLALAGGLAGCAMWLPPTYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFR 621
FS YG+ R + R+ T+ L + +AGA+ GV+ +P RQ+ ER+K VMQ+ + +SPYSWSGAC LV+ EGV +GL +G + +LRE QF +YYP YE AK + PD T + LAGG AG WLPP YC DVIK+RMQTA G Y G+ DC + +A G V FR
Sbjct: 23 FSGYGHGCRSIAEHRQIDITE-LGYADLSMAGAYTGVLQSPARQLVERIKSVMQIHERSGGKSPYSWSGACAYHLVKTEGVRVGLFQGFSSVLLREIPQFSVYYPCYEFAKSIYTEKIPDNPKT------VNFLAGGTAGVVQWLPPIYCFDVIKSRMQTAPKGAYSGLMDCARQLYQAHGSSVFFR 202
BLAST of mRNA_Ecto-sp13_S_contig6779.17701.1 vs. uniprot
Match: A0A4D9D591_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D591_9STRA) HSP 1 Score: 159 bits (402), Expect = 3.870e-45 Identity = 88/182 (48.35%), Postives = 113/182 (62.09%), Query Frame = 1
Query: 223 MQVRQ--GKKLQSPYSWSGACIVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEI--------------------AKDYFLPPDRASTAVPEPMLLALAGGLAGCAMWLPPTYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLL 702
MQVR+ G ++PY WSG C+V LVR+EG+ GL RG+ AT LRE QF +YYP YE+ K+ +ST +P P LL LAGG+AG WLPP YCLDV+K+RMQ+A PGVY V DC K+ + EG+ V FRGL A++RAFP++ +FLGYETT+ L
Sbjct: 1 MQVRKAAGGVDKAPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSSHEKNRVNRKPSSSTPLP-PHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAAL 181
BLAST of mRNA_Ecto-sp13_S_contig6779.17701.1 vs. uniprot
Match: A0A7S1G657_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G657_9STRA) HSP 1 Score: 154 bits (388), Expect = 2.820e-41 Identity = 96/249 (38.55%), Postives = 139/249 (55.82%), Query Frame = 1
Query: 7 SLYRGLLSPVVGYGAMFAVSFSAYGYAGRFLLRRREAKPTD----KLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACIVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRASTAVPEPMLLALAGGLAGCAMWLPPTYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYE------TTIDLLGVRPRSS 723
+LYRG+ +P+ GYGA+ ++ S YG +LRRR A+ +L++ E AGA AGV++ +R ERVK VMQVR+ + S C+V +R EG+ G AT+LRE Q Y+P++EI K P +S + LL +AGG+AG WLPP YC+DV+K+RM+ G GV L ++ EG VL RG+G AM+RAFPMH + E + ++++ V P +S
Sbjct: 102 ALYRGMSAPIAGYGAINSLLLSTYGMTA-VVLRRRNAEAAGGVDRELSMEESMAAGAVAGVVSTVLRAPVERVKAVMQVRRNPDGTKVFRNSWRCLVGTMRTEGLLSPFAAGR-ATLLRELFQGVAYFPAFEITKRALTPAGGSSNDLDFWRLL-IAGGVAGITQWLPPMYCIDVVKSRMEVPPAGSTPGVLGVLRASVAKEGGMVLLRGMGPAMVRAFPMHATILTTNELMTAWLSKLEVVDVAPAAS 347
BLAST of mRNA_Ecto-sp13_S_contig6779.17701.1 vs. uniprot
Match: A0A0D2VZ19_CAPO3 (Solute carrier family 25 n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VZ19_CAPO3) HSP 1 Score: 152 bits (384), Expect = 2.510e-40 Identity = 101/254 (39.76%), Postives = 141/254 (55.51%), Query Frame = 1
Query: 4 LSLYRGLLSPVVGYGAMFAVSFSAYGYAGRFLLRRREA------KPTD-----KLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACIVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRASTAVPEPMLLALAGGLAGCAMWLPPTYCLDVIKTRMQTAEPGV-------------YRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTI 693
L+LY G+LSPVVG + AV F +YG ++LL R++ +P KL+ E +A AG++ + ERVK MQ GK +S C++ LVR G++ GL +G T+LRE +G Y+ SY++AK F P + + + P LLALAGG+AG W+P Y +DVIK+R+Q A+P Y GV DC +++ RAEG+ V FRGL + RAFP H VFLGYE T+
Sbjct: 131 LALYSGMLSPVVGVAGVKAVVFGSYGGISQWLLARKQGVVAGSEQPQQQQQPVKLSGFENALASCSAGLVATIVVTPVERVKVSMQASGGKAFKSTLD----CVLSLVRTAGISGGLFKGFVPTVLREVPSYGAYFISYDMAKRAFCQPGQDVSTL-SPGLLALAGGIAGVMAWVP-IYPIDVIKSRIQ-AQPSSALVAASSGSSSRPYSGVVDCAVRSYRAEGLGVFFRGLTPTIARAFPCHAAVFLGYELTL 377 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6779.17701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6779.17701.1 >prot_Ecto-sp13_S_contig6779.17701.1 ID=prot_Ecto-sp13_S_contig6779.17701.1|Name=mRNA_Ecto-sp13_S_contig6779.17701.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=258bp TLSLYRGLLSPVVGYGAMFAVSFSAYGYAGRFLLRRREAKPTDKLTLPEKback to top mRNA from alignment at Ecto-sp13_S_contig6779:4854..7940- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6779.17701.1 ID=mRNA_Ecto-sp13_S_contig6779.17701.1|Name=mRNA_Ecto-sp13_S_contig6779.17701.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3087bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6779:4854..7940- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6779:4854..7940- >mRNA_Ecto-sp13_S_contig6779.17701.1 ID=mRNA_Ecto-sp13_S_contig6779.17701.1|Name=mRNA_Ecto-sp13_S_contig6779.17701.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=774bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6779:4854..7940- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |