mRNA_Ecto-sp13_S_contig6779.17701.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6779.17701.1
Unique NamemRNA_Ecto-sp13_S_contig6779.17701.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6779.17701.1 vs. uniprot
Match: A0A6H5JUA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA4_9PHAE)

HSP 1 Score: 506 bits (1304), Expect = 2.210e-180
Identity = 249/257 (96.89%), Postives = 252/257 (98.05%), Query Frame = 1
Query:    1 TLSLYRGLLSPVVGYGAMFAVSFSAYGYAGRFLLRRREAKPTDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACIVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRASTAVPEPMLLALAGGLAGCAMWLPPTYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLGVRPRSSCSPTSVNTSLVKQVLE 771
            TLSLYRGLLSPVVGYGAMFAVSFS+YGYAGRFLLRRREAK TD+LTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGAC+VDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDY LPPDR STAVPEPMLLALAGGLAGC MWLPPTYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLG RPRSSCSPTSVNTSLVKQVLE
Sbjct:   56 TLSLYRGLLSPVVGYGAMFAVSFSSYGYAGRFLLRRREAKATDELTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYLLPPDRTSTAVPEPMLLALAGGLAGCVMWLPPTYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLGARPRSSCSPTSVNTSLVKQVLE 312          
BLAST of mRNA_Ecto-sp13_S_contig6779.17701.1 vs. uniprot
Match: D7FM07_ECTSI (Carnitine/acylcarnitine carrier protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM07_ECTSI)

HSP 1 Score: 447 bits (1149), Expect = 6.040e-158
Identity = 218/226 (96.46%), Postives = 221/226 (97.79%), Query Frame = 1
Query:   94 FLLRRREAKPTDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACIVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRASTAVPEPMLLALAGGLAGCAMWLPPTYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLGVRPRSSCSPTSVNTSLVKQVLE 771
            FLLRRREAK TDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGAC+VDLVRREG+AMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDR STAVPEP+LLALAGGLAGC MWLPP YCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLG RPRSSCSPTSVNTSLVKQVLE
Sbjct:   12 FLLRRREAKATDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGIAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRTSTAVPEPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLGARPRSSCSPTSVNTSLVKQVLE 237          
BLAST of mRNA_Ecto-sp13_S_contig6779.17701.1 vs. uniprot
Match: D7FLY9_ECTSI (Carnitine/acylcarnitine carrier protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLY9_ECTSI)

HSP 1 Score: 301 bits (772), Expect = 3.150e-100
Identity = 163/254 (64.17%), Postives = 185/254 (72.83%), Query Frame = 1
Query:    4 LSLYRGLLSPVVGYGAMFAVSFSAYGYAGRFLLRRREAKP----TDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACIVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRASTA----VPEPMLLALAGGLAGCAMWLPPTYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLGVRPRSSCSPTSV 741
            +S YRGLLSPV GYGAMFAVSFS+YG A RFL R          + ++ L EK  AG +AG MN+P R VF+RVK VMQVR G    +PYSWSGAC  DLVRREGV  GL RG+ +TMLRE LQ  IYYPSYE+ KD      R ST+    VPEP L  LAGG+AGCA WLPP YCLDVIKTR+Q+AEPGVY G  DCL KT+R+EG PVLFRGLG +MLRAFPMHGLVF+GYETTI LL  R   +C PT+V
Sbjct:    8 MSWYRGLLSPVAGYGAMFAVSFSSYGMASRFLQRXXXXXXXXXXSGEVFLWEKSAAGFFAGAMNSPFRTVFDRVKTVMQVRVGNGRAAPYSWSGACAADLVRREGVMSGLFRGIESTMLREMLQCAIYYPSYEVTKDLLA---RRSTSGKSSVPEPALQMLAGGIAGCATWLPPVYCLDVIKTRLQSAEPGVYGGTWDCLRKTVRSEGTPVLFRGLGLSMLRAFPMHGLVFVGYETTIGLLTTR--ENC-PTAV 255          
BLAST of mRNA_Ecto-sp13_S_contig6779.17701.1 vs. uniprot
Match: A0A836C8G7_9STRA (Carnitine/acylcarnitine carrier protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8G7_9STRA)

HSP 1 Score: 255 bits (651), Expect = 5.200e-82
Identity = 126/229 (55.02%), Postives = 160/229 (69.87%), Query Frame = 1
Query:    7 SLYRGLLSPVVGYGAMFAVSFSAYGYAGRFLLRRREAKPTDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACIVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRASTAVPEPMLLALAGGLAGCAMWLPPTYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTI 693
            SLYRGL SPV+GYG +FA+SFSA G A R+L  R         ++ E  +AGAWAG + AP RQVFERVKGVMQVR G   ++PYSWSGAC+VDLVR EGV MGL RGMG+  +RE  QF +YYP+Y++AK   LP D   +    P+ + LAGG+AG   WLPP Y +DV+KT++QTA PG Y+ + D   KT+  EG   LFRGLG +++RAFP+H  +F GYE T+
Sbjct:   20 SLYRGLASPVLGYGVLFAMSFSANGQALRYLRNRDGRAANAPASVAEMTLAGAWAGAVQAPARQVFERVKGVMQVRNGAGGKAPYSWSGACLVDLVRTEGVQMGLFRGMGSQFIREVPQFALYYPAYDVAKRAILPADGHIS----PIHMLLAGGIAGTVQWLPPIYNIDVLKTKIQTAAPGTYKSIADAARKTVATEGTKGLFRGLGPSLVRAFPLHATIFAGYELTM 244          
BLAST of mRNA_Ecto-sp13_S_contig6779.17701.1 vs. uniprot
Match: W7TE76_9STRA (Mitochondrial carrier family n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TE76_9STRA)

HSP 1 Score: 229 bits (584), Expect = 1.470e-71
Identity = 126/254 (49.61%), Postives = 160/254 (62.99%), Query Frame = 1
Query:    7 SLYRGLLSPVVGYGAMFAVSFSAYGYAGRFLLRRREAKPTDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQ--GKKLQSPYSWSGACIVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEI---AKDYFLPPDRAS-----------------TAVPEPMLLALAGGLAGCAMWLPPTYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLL 702
            SLYRGLLSP  G+G  FA+SF+ YG   RF    R+     +LTL E   +GAWAG++ +P RQ+FER+K VMQVR+  G   + PY WSG C+V LVR+EG+  GL RG+ AT LRE  QF +YYP YE+   A    +    AS                 T +P P LL LAGG+AG   WLPP YCLDV+K+RMQ+A PGVY  V DC  K+ + EG+ V FRGL  A++RAFP++  +FLGYETT+  L
Sbjct:    9 SLYRGLLSPQAGFGVTFAISFAGYGQGTRFF---RKGDNKRELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSXNESNIVHRKPSSSTPLP-PHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAAL 258          
BLAST of mRNA_Ecto-sp13_S_contig6779.17701.1 vs. uniprot
Match: K8Z8A3_NANGC (Mitochondrial carrier family n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z8A3_NANGC)

HSP 1 Score: 188 bits (478), Expect = 2.250e-55
Identity = 108/235 (45.96%), Postives = 142/235 (60.43%), Query Frame = 1
Query:    7 SLYRGLLSPVVGYGAMFAVSFSAYGYAGRFLLRRREAKPTDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQ--GKKLQSPYSWSGACIVDL-VRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRASTAVPEPMLLALAGGLAGCAMWLPPTYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLL 702
            SLYRGLLSP  G+G  FA+SF+ YG   RF    R+     +LTL E   +GAWAG++ +P RQ+FER+K VMQVR+  G   + PY WSG C+ ++ VR     M      G++     +      PS             +ST +P P LL LAGG+AG   WLPP YCLDV+K+RMQ+A PGVY  V DC  K+ + EG+ V FRGL  A++RAFP++  +FLGYETT+  L
Sbjct:   59 SLYRGLLSPQAGFGVTFAISFAGYGQGTRFF---RKGDNKRELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLYEMNVRALQKMMAASNASGSSSNESNIVHR--KPS-------------SSTPLP-PHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAAL 274          
BLAST of mRNA_Ecto-sp13_S_contig6779.17701.1 vs. uniprot
Match: A0A482SEK8_9ARCH (MC/SLC25 family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEK8_9ARCH)

HSP 1 Score: 161 bits (408), Expect = 7.370e-46
Identity = 85/187 (45.45%), Postives = 111/187 (59.36%), Query Frame = 1
Query:   67 FSAYGYAGRFLLRRREAKPTDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACIVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLP--PDRASTAVPEPMLLALAGGLAGCAMWLPPTYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFR 621
            FS YG+  R +   R+   T+ L   +  +AGA+ GV+ +P RQ+ ER+K VMQ+ +    +SPYSWSGAC   LV+ EGV +GL +G  + +LRE  QF +YYP YE AK  +    PD   T      +  LAGG AG   WLPP YC DVIK+RMQTA  G Y G+ DC  +  +A G  V FR
Sbjct:   23 FSGYGHGCRSIAEHRQIDITE-LGYADLSMAGAYTGVLQSPARQLVERIKSVMQIHERSGGKSPYSWSGACAYHLVKTEGVRVGLFQGFSSVLLREIPQFSVYYPCYEFAKSIYTEKIPDNPKT------VNFLAGGTAGVVQWLPPIYCFDVIKSRMQTAPKGAYSGLMDCARQLYQAHGSSVFFR 202          
BLAST of mRNA_Ecto-sp13_S_contig6779.17701.1 vs. uniprot
Match: A0A4D9D591_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D591_9STRA)

HSP 1 Score: 159 bits (402), Expect = 3.870e-45
Identity = 88/182 (48.35%), Postives = 113/182 (62.09%), Query Frame = 1
Query:  223 MQVRQ--GKKLQSPYSWSGACIVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEI--------------------AKDYFLPPDRASTAVPEPMLLALAGGLAGCAMWLPPTYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLL 702
            MQVR+  G   ++PY WSG C+V LVR+EG+  GL RG+ AT LRE  QF +YYP YE+                     K+       +ST +P P LL LAGG+AG   WLPP YCLDV+K+RMQ+A PGVY  V DC  K+ + EG+ V FRGL  A++RAFP++  +FLGYETT+  L
Sbjct:    1 MQVRKAAGGVDKAPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSSHEKNRVNRKPSSSTPLP-PHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAAL 181          
BLAST of mRNA_Ecto-sp13_S_contig6779.17701.1 vs. uniprot
Match: A0A7S1G657_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G657_9STRA)

HSP 1 Score: 154 bits (388), Expect = 2.820e-41
Identity = 96/249 (38.55%), Postives = 139/249 (55.82%), Query Frame = 1
Query:    7 SLYRGLLSPVVGYGAMFAVSFSAYGYAGRFLLRRREAKPTD----KLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACIVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRASTAVPEPMLLALAGGLAGCAMWLPPTYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYE------TTIDLLGVRPRSS 723
            +LYRG+ +P+ GYGA+ ++  S YG     +LRRR A+       +L++ E   AGA AGV++  +R   ERVK VMQVR+       +  S  C+V  +R EG+      G  AT+LRE  Q   Y+P++EI K    P   +S  +    LL +AGG+AG   WLPP YC+DV+K+RM+    G   GV   L  ++  EG  VL RG+G AM+RAFPMH  +    E      + ++++ V P +S
Sbjct:  102 ALYRGMSAPIAGYGAINSLLLSTYGMTA-VVLRRRNAEAAGGVDRELSMEESMAAGAVAGVVSTVLRAPVERVKAVMQVRRNPDGTKVFRNSWRCLVGTMRTEGLLSPFAAGR-ATLLRELFQGVAYFPAFEITKRALTPAGGSSNDLDFWRLL-IAGGVAGITQWLPPMYCIDVVKSRMEVPPAGSTPGVLGVLRASVAKEGGMVLLRGMGPAMVRAFPMHATILTTNELMTAWLSKLEVVDVAPAAS 347          
BLAST of mRNA_Ecto-sp13_S_contig6779.17701.1 vs. uniprot
Match: A0A0D2VZ19_CAPO3 (Solute carrier family 25 n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VZ19_CAPO3)

HSP 1 Score: 152 bits (384), Expect = 2.510e-40
Identity = 101/254 (39.76%), Postives = 141/254 (55.51%), Query Frame = 1
Query:    4 LSLYRGLLSPVVGYGAMFAVSFSAYGYAGRFLLRRREA------KPTD-----KLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACIVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRASTAVPEPMLLALAGGLAGCAMWLPPTYCLDVIKTRMQTAEPGV-------------YRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTI 693
            L+LY G+LSPVVG   + AV F +YG   ++LL R++       +P       KL+  E  +A   AG++   +    ERVK  MQ   GK  +S       C++ LVR  G++ GL +G   T+LRE   +G Y+ SY++AK  F  P +  + +  P LLALAGG+AG   W+P  Y +DVIK+R+Q A+P               Y GV DC +++ RAEG+ V FRGL   + RAFP H  VFLGYE T+
Sbjct:  131 LALYSGMLSPVVGVAGVKAVVFGSYGGISQWLLARKQGVVAGSEQPQQQQQPVKLSGFENALASCSAGLVATIVVTPVERVKVSMQASGGKAFKSTLD----CVLSLVRTAGISGGLFKGFVPTVLREVPSYGAYFISYDMAKRAFCQPGQDVSTL-SPGLLALAGGIAGVMAWVP-IYPIDVIKSRIQ-AQPSSALVAASSGSSSRPYSGVVDCAVRSYRAEGLGVFFRGLTPTIARAFPCHAAVFLGYELTL 377          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6779.17701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUA4_9PHAE2.210e-18096.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FM07_ECTSI6.040e-15896.46Carnitine/acylcarnitine carrier protein n=1 Tax=Ec... [more]
D7FLY9_ECTSI3.150e-10064.17Carnitine/acylcarnitine carrier protein n=1 Tax=Ec... [more]
A0A836C8G7_9STRA5.200e-8255.02Carnitine/acylcarnitine carrier protein n=1 Tax=Tr... [more]
W7TE76_9STRA1.470e-7149.61Mitochondrial carrier family n=1 Tax=Nannochlorops... [more]
K8Z8A3_NANGC2.250e-5545.96Mitochondrial carrier family n=1 Tax=Nannochlorops... [more]
A0A482SEK8_9ARCH7.370e-4645.45MC/SLC25 family protein n=1 Tax=archaeon TaxID=190... [more]
A0A4D9D591_9STRA3.870e-4548.35Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S1G657_9STRA2.820e-4138.55Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A0D2VZ19_CAPO32.510e-4039.76Solute carrier family 25 n=2 Tax=Capsaspora owczar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6779contigEcto-sp13_S_contig6779:4854..7940 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score450.3
Seed ortholog evalue6.1e-124
Seed eggNOG ortholog2880.D7FM07
Model size774
KEGG koko:K15109
KEGG TC2.A.29.8
KEGG Pathwayko04714,map04714
Hectar predicted targeting categorysignal peptide
Exons6
EggNOG free text desc.mitochondrial transport
EggNOG OGsKOG0758@1,KOG0758@2759
Ec32 ortholog descriptioncarnitine/acylcarnitine carrier protein
Ec32 orthologEc-22_000440.1
Cds size774
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6779.17701.1prot_Ecto-sp13_S_contig6779.17701.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6779 4854..7940 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463931.418447-CDS-Ecto-sp13_S_contig6779:4853..50341681463931.418447-CDS-Ecto-sp13_S_contig6779:4853..5034Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6779 4854..5034 -
1681463931.432394-CDS-Ecto-sp13_S_contig6779:5465..56741681463931.432394-CDS-Ecto-sp13_S_contig6779:5465..5674Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6779 5466..5674 -
1681463931.4414842-CDS-Ecto-sp13_S_contig6779:6413..64981681463931.4414842-CDS-Ecto-sp13_S_contig6779:6413..6498Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6779 6414..6498 -
1681463931.4506733-CDS-Ecto-sp13_S_contig6779:6943..70141681463931.4506733-CDS-Ecto-sp13_S_contig6779:6943..7014Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6779 6944..7014 -
1681463931.4644246-CDS-Ecto-sp13_S_contig6779:7441..75651681463931.4644246-CDS-Ecto-sp13_S_contig6779:7441..7565Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6779 7442..7565 -
1681463931.4849772-CDS-Ecto-sp13_S_contig6779:7836..79401681463931.4849772-CDS-Ecto-sp13_S_contig6779:7836..7940Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6779 7837..7940 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6779.17701.1

>prot_Ecto-sp13_S_contig6779.17701.1 ID=prot_Ecto-sp13_S_contig6779.17701.1|Name=mRNA_Ecto-sp13_S_contig6779.17701.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=258bp
TLSLYRGLLSPVVGYGAMFAVSFSAYGYAGRFLLRRREAKPTDKLTLPEK
GIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACIVDLVRR
EGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRASTAVPEPM
LLALAGGLAGCAMWLPPTYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAE
GMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLGVRPRSSCSPTSVNTS
LVKQVLE*
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mRNA from alignment at Ecto-sp13_S_contig6779:4854..7940-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6779.17701.1 ID=mRNA_Ecto-sp13_S_contig6779.17701.1|Name=mRNA_Ecto-sp13_S_contig6779.17701.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3087bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6779:4854..7940- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGCTGTCCCTATACCGGGGCCTTCTCTCTCCGGTCGTCGGCTACGGAGC TATGTTCGCTGTGTCATTTTCCGCCTACGGCTACGCCGGCAGGTTTCTTC TACGGTGAGCATTCATTAAGGTTGCCTACAGTACCTCTACTGGAGTTTTA TCACGATCGTCAAACATCAAATTAAACAGACGTACAGGCCCTCAGGACAA GTACCGTCATTTTTGATATTATTTTCTTCTTTTGGTGAGATATTTTCAAA CAAAGAGTCGCAGAGCAGAGGTGAGAACCGATTGCTCGATAGTCGATACC AACAGAGGAGCGACCTCTAACTTTTGGTGGTATGTGGGCGCGTACTGGGC ATTTCGTTCCCAATGGTTTGGTCAGGCGGAGAGAGGCGAAACCAACCGAC AAGCTGACCCTCCCCGAGAAGGGAATCGCTGGGGCGTGGGCTGGCGTAAT GAACGCTCCTATGCGACAGGTGTTCGAGAGGGTCAAGGGAGTCATGCAGG TGAAAACAGAGACCGAAGCAAGCGTCGAACGCACTAGGTTGTCGGGCCTC TCAGTAAGGCTGTGTTTGCTATGACAGGAGCCTCGCCCGTAAGCCGAACA CGAAACCGGAGGTGCATCCTTCACCAAACCGCAGAAGCTCACGCACTACA GTTAGGTACATACTCCGAGTTAGTTGGACCAGCGGATATTGAGAAGGTAC GGAGTAGAGATCGGAAAGATTTTTCAATATCAAGACAAAACAACAACAAC AACAACAACAACAACAACAACAACAAAGACAAAACACTAGCAGAGCAAAG CTCTTCCCGACAAACCCGAGAAACGCGCTCCGTGAGCGTGCCTCTCTCGA CTCGAGCGATTCTTCTGTACAACCTGACGAAGAATGCCTACGAAAGTGAT GTGTCTGCTCCGGTGGGCGGCGGCAGGTGCGGCAAGGAAAGAAGCTGCAA TCGCCGTACTCCTGGAGCGGGGCTTGCATTGTAGACCTTGTGCGAAGGTG AGAGGCCGCAACCATTGCTTCCCAGCCGGGCGGGGGAAGGGAGGGAGACC ACAATTCATACCTTCCGCGTCTCCGACGGCAATACTCCGCGGAGAGATCA CTGCTAGTGCTTCTTGCACGGCGGTAGTAGTACCGCATGGTGGCCTGTGA CCCAATACGGGACGAGGGCTGCGGGCTCAACAGGAACGCCGAGGGTACGC AGCTGCTCTGCCGAGTGCGGCGTCTGCGGCTGCGATTATCGGGAAGGTGT ATTAAATAGGGCTACTGGAGGCGGGTAGCGGAAGGGAGTGGCCGACTTCC CTACGGGCTACCGATCCCGTGCATGTTGGTTTTGTGCGGAGAAGCGTGGA CGGGCTGTATACCTCCGAAGAACCATGTATTCCTTCACTCCTGACGTCTC CGCACGGTGTTTTTTCATTCATTCACGGCCGTGTTATTACAGGGAGGGTG TTGCCATGGGGCTATGTCGGGGCATGGGAGCGACCATGCTCAGGGAGCCC CTTCAGTTCGGCATCTACTACCCATCGGTGCGACTAAAATTGAATGCAGT GGTGATCTATGTATTCGGCCGCATAATGCTTAAGGGAGTTGGCCGCTTTA TACCGAGTACCCGGCACCATCAAGTGTATGAGACGACTTGAATATTTCAT CTGGGTGAAACAAGTTCACCGGCCTTAGCTATGCGGCCTTCTACGGGAAC AACTCCAGTGTGGCCCAAACCAGGTTTCCTGACGTTGGAGTAGGATGGAG AGGTGAAGCGCCTGTGGTACTGAGCGGGGATGGGGGGACCTAGCCCAATG GCTGGACGAAGAAACAAGAAACGAAATTTTAAGCAAGACATGCAGTAACA ATAATCTTCCCCCGACGGAAACGTCGTCTTCTCTCGTAGAGGTACAATTC CCGCTCGGAATCACACTGCCGCCGAAACACGTCCACGGCACTTTCGCCCG TGGGGGTAGCTCCGAGAGAAATATCCCCCCTTCTGTTCTACCGCATGTAC GACGACATAAAAATGACCGTGAGTATTTTGCGAGTGCCCCCTACCTGCCG AACGTGAATCGTTTGATTAGCCGGGATGCCCAATCAATCAATGACATACA TACCTGGTTCATCCTTACGATGCGTAGCCTGGGCCACGAAAACCCGGCAT ATCGCTCCGTCCCAGCATGGCAGGAATGCTTTAGGTTAATGGTGCAACGA CTACGGCTCGAGCTGCAGACCCCCCCGCTTTCCCCCTCTTTCCCCCTCTT TCATGCAAACCTATAGTACGAGATTGCCAAGGACTACTTTTTGCCTCCGG ACCGGGCAAGCACGGCGGTGCCCGAGCCGATGCTCCTGGCCCTGGCGGGG GGGCTAGCGGGATGCGCAATGTGGCTCCCACCGACCTACTGCCTGGACGT GATCAAGACGAGGATGCAGACGGCAGAGCCTGGGGTGTACCGAGGAGTGC GGGACTGCTTGATGAAGACCCTGAGGTGTGGGGAACTATTTTGCACCAAG CGGGGTGGTGGTTGCCGTATTTAGTGGTGGAATGTACGACGATTACTACT ATTGCGTGTTGGTCTGTTAGACGGAAATCACGGGTCTTTTGCAGTTGATG ACAAAAGCGTTTGTCGGCTACTTTGTGTTCCGTCGATATGGTGCGGCGGC GGCTCCAGGGTCCCACCCGACCTGGGCGTACATCGCGCCAAAGTCTTGGG GGGCCGCGTTACCTCATCAGGCATATTCTAGTCCCTGATCACGCTAGGGT ATTTTTCAGTCCTATCCTTGCGATATAGCACGAACGCTCTGGTGGAGGGG CACCGAACAGAACATCGGGACGGCTTCTTGGTATAAGAGAAGAAAATCCT CCGACCAAGTAAATTCTAACCCCGATACCCATTGTGGTGACTTTCTGATA CCGCAGGGCGGAGGGCATGCCAGTGCTGTTCAGGGGGCTGGGAGCGGCCA TGCTGCGCGCGTTCCCGATGCACGGCCTCGTGTTCCTCGGCTACGAGACC ACCATCGACCTGTTGGGTGTCCGGCCGCGCTCCTCCTGCAGCCCAACGAG CGTCAACACGTCATTAGTTAAGCAGGTCCTGGAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6779:4854..7940-

>mRNA_Ecto-sp13_S_contig6779.17701.1 ID=mRNA_Ecto-sp13_S_contig6779.17701.1|Name=mRNA_Ecto-sp13_S_contig6779.17701.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=774bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6779:4854..7940- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGCTGTCCCTATACCGGGGCCTTCTCTCTCCGGTCGTCGGCTACGGAGC
TATGTTCGCTGTGTCATTTTCCGCCTACGGCTACGCCGGCAGGTTTCTTC
TACGGCGGAGAGAGGCGAAACCAACCGACAAGCTGACCCTCCCCGAGAAG
GGAATCGCTGGGGCGTGGGCTGGCGTAATGAACGCTCCTATGCGACAGGT
GTTCGAGAGGGTCAAGGGAGTCATGCAGGTGCGGCAAGGAAAGAAGCTGC
AATCGCCGTACTCCTGGAGCGGGGCTTGCATTGTAGACCTTGTGCGAAGG
GAGGGTGTTGCCATGGGGCTATGTCGGGGCATGGGAGCGACCATGCTCAG
GGAGCCCCTTCAGTTCGGCATCTACTACCCATCGTACGAGATTGCCAAGG
ACTACTTTTTGCCTCCGGACCGGGCAAGCACGGCGGTGCCCGAGCCGATG
CTCCTGGCCCTGGCGGGGGGGCTAGCGGGATGCGCAATGTGGCTCCCACC
GACCTACTGCCTGGACGTGATCAAGACGAGGATGCAGACGGCAGAGCCTG
GGGTGTACCGAGGAGTGCGGGACTGCTTGATGAAGACCCTGAGGGCGGAG
GGCATGCCAGTGCTGTTCAGGGGGCTGGGAGCGGCCATGCTGCGCGCGTT
CCCGATGCACGGCCTCGTGTTCCTCGGCTACGAGACCACCATCGACCTGT
TGGGTGTCCGGCCGCGCTCCTCCTGCAGCCCAACGAGCGTCAACACGTCA
TTAGTTAAGCAGGTCCTGGAGTAG
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