mRNA_Ecto-sp13_S_contig67708.17694.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig67708.17694.1
Unique NamemRNA_Ecto-sp13_S_contig67708.17694.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig67708.17694.1 vs. uniprot
Match: D7G4J4_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4J4_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 1.270e-40
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 
Query:    1 EGGEVGFVAAPRAEGLTGDDFQCNICWEMLARPVTLACGHTACESCMAKYLRAQAQAQAQIGNLRANRISCP 216
            EGGEVGFVAAPRAEGLTGDDFQCNICWEMLARPVTLACGHTACESCMAKYLRAQAQAQAQIGNLRANRISCP
Sbjct:  167 EGGEVGFVAAPRAEGLTGDDFQCNICWEMLARPVTLACGHTACESCMAKYLRAQAQAQAQIGNLRANRISCP 238
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BLAST of mRNA_Ecto-sp13_S_contig67708.17694.1 vs. uniprot
Match: A0A6H5JAA6_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAA6_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 3.290e-40
Identity = 71/72 (98.61%), Postives = 72/72 (100.00%), Query Frame = 1 
Query:    1 EGGEVGFVAAPRAEGLTGDDFQCNICWEMLARPVTLACGHTACESCMAKYLRAQAQAQAQIGNLRANRISCP 216
            EGGEVGFVAAPRAEGLTGDDFQCNICWEMLARPVTLACGHTACESCMAKYLRAQAQAQAQIGN+RANRISCP
Sbjct:  422 EGGEVGFVAAPRAEGLTGDDFQCNICWEMLARPVTLACGHTACESCMAKYLRAQAQAQAQIGNVRANRISCP 493
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig67708.17694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4J4_ECTSI1.270e-40100.00RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JAA6_9PHAE3.290e-4098.61RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig67708contigEcto-sp13_S_contig67708:410..625 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size216
Hectar predicted targeting categoryother localisation
Exons1
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463930.8642428-CDS-Ecto-sp13_S_contig67708:409..6251681463930.8642428-CDS-Ecto-sp13_S_contig67708:409..625Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig67708 410..625 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig67708.17694.1prot_Ecto-sp13_S_contig67708.17694.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig67708 410..625 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig67708.17694.1

>prot_Ecto-sp13_S_contig67708.17694.1 ID=prot_Ecto-sp13_S_contig67708.17694.1|Name=mRNA_Ecto-sp13_S_contig67708.17694.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp
EGGEVGFVAAPRAEGLTGDDFQCNICWEMLARPVTLACGHTACESCMAKY
LRAQAQAQAQIGNLRANRISCP
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mRNA from alignment at Ecto-sp13_S_contig67708:410..625-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig67708.17694.1 ID=mRNA_Ecto-sp13_S_contig67708.17694.1|Name=mRNA_Ecto-sp13_S_contig67708.17694.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67708:410..625- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGGCGGTGAGGTCGGGTTCGTCGCGGCCCCGCGGGCGGAAGGCCTGAC
TGGGGACGACTTCCAGTGCAACATTTGCTGGGAGATGCTGGCGAGGCCTG
TCACTCTGGCGTGCGGGCACACCGCGTGCGAGTCGTGCATGGCGAAGTAC
CTGCGGGCACAGGCTCAGGCCCAGGCTCAGATCGGGAACCTCCGCGCCAA
CCGCATTTCGTGCCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig67708:410..625-

>mRNA_Ecto-sp13_S_contig67708.17694.1 ID=mRNA_Ecto-sp13_S_contig67708.17694.1|Name=mRNA_Ecto-sp13_S_contig67708.17694.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67708:410..625- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGGCGGTGAGGTCGGGTTCGTCGCGGCCCCGCGGGCGGAAGGCCTGAC
TGGGGACGACTTCCAGTGCAACATTTGCTGGGAGATGCTGGCGAGGCCTG
TCACTCTGGCGTGCGGGCACACCGCGTGCGAGTCGTGCATGGCGAAGTAC
CTGCGGGCACAGGCTCAGGCCCAGGCTCAGATCGGGAACCTCCGCGCCAA
CCGCATTTCGTGCCCC
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