prot_Ecto-sp13_S_contig67708.17694.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig67708.17694.1
Unique Nameprot_Ecto-sp13_S_contig67708.17694.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length72
Homology
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BLAST of mRNA_Ecto-sp13_S_contig67708.17694.1 vs. uniprot
Match: D7G4J4_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4J4_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 1.270e-40
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 
Query:    1 EGGEVGFVAAPRAEGLTGDDFQCNICWEMLARPVTLACGHTACESCMAKYLRAQAQAQAQIGNLRANRISCP 72
            EGGEVGFVAAPRAEGLTGDDFQCNICWEMLARPVTLACGHTACESCMAKYLRAQAQAQAQIGNLRANRISCP
Sbjct:  167 EGGEVGFVAAPRAEGLTGDDFQCNICWEMLARPVTLACGHTACESCMAKYLRAQAQAQAQIGNLRANRISCP 238
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BLAST of mRNA_Ecto-sp13_S_contig67708.17694.1 vs. uniprot
Match: A0A6H5JAA6_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAA6_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 3.290e-40
Identity = 71/72 (98.61%), Postives = 72/72 (100.00%), Query Frame = 0 
Query:    1 EGGEVGFVAAPRAEGLTGDDFQCNICWEMLARPVTLACGHTACESCMAKYLRAQAQAQAQIGNLRANRISCP 72
            EGGEVGFVAAPRAEGLTGDDFQCNICWEMLARPVTLACGHTACESCMAKYLRAQAQAQAQIGN+RANRISCP
Sbjct:  422 EGGEVGFVAAPRAEGLTGDDFQCNICWEMLARPVTLACGHTACESCMAKYLRAQAQAQAQIGNVRANRISCP 493
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig67708.17694.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4J4_ECTSI1.270e-40100.00RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JAA6_9PHAE3.290e-4098.61RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 10..72
e-value: 1.1E-13
score: 52.4
NoneNo IPR availablePFAMPF15227zf-C3HC4_4coord: 23..58
e-value: 2.0E-9
score: 37.4
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 17..54
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 23..72
score: 10.335

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig67708contigEcto-sp13_S_contig67708:410..625 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig67708.17694.1mRNA_Ecto-sp13_S_contig67708.17694.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig67708 410..625 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig67708.17694.1 ID=prot_Ecto-sp13_S_contig67708.17694.1|Name=mRNA_Ecto-sp13_S_contig67708.17694.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp
EGGEVGFVAAPRAEGLTGDDFQCNICWEMLARPVTLACGHTACESCMAKY
LRAQAQAQAQIGNLRANRISCP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING