mRNA_Ecto-sp13_S_contig6765.17686.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6765.17686.1 vs. uniprot
Match: D7G3P0_ECTSI (Integrins alpha chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P0_ECTSI) HSP 1 Score: 552 bits (1423), Expect = 1.630e-197 Identity = 289/311 (92.93%), Postives = 299/311 (96.14%), Query Frame = 1
Query: 1 MTLLVVCLARRGVIEAGFFLSALLYPLAAAAGTFQPNVNASSSPRIYNASEINEDWLGYSCASVGDVNGDSLMDVIVGAYGSSHLSEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSIKMELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDGFGDILVGSPTAGAVSQGHTYLVFGGAGLPGRVNLTESDDVTGGNEGVVVFKGALTGEVYESGFSVSGGFDMNGDGLSDFMIGAPEGGTIGEFDGEAYVVFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIGVRL 933
MTL VVC ARRGVIEAGFFLSALL PLAAAAGTFQ NVNASSSPRIYNASE+NEDWLGYSCAS+GDVNGDSLMDV+VG+YGSSHLSEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSI++ELYAKL+SDTLDRQLSLQYTGNPLSSAGDVNGDG+GDILVGSPTAGAV QGHTYLVFGGAGLP RVNLTESDDVTGGNEGVVVFKGALT E SGFSVSGGFDMNGDGLSDF+IGAPEGGT GEFDGEAYV+FGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIG RL
Sbjct: 1 MTLFVVCPARRGVIEAGFFLSALLCPLAAAAGTFQSNVNASSSPRIYNASEMNEDWLGYSCASIGDVNGDSLMDVMVGSYGSSHLSEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSIEIELYAKLISDTLDRQLSLQYTGNPLSSAGDVNGDGYGDILVGSPTAGAVYQGHTYLVFGGAGLPSRVNLTESDDVTGGNEGVVVFKGALTDE---SGFSVSGGFDMNGDGLSDFIIGAPEGGTTGEFDGEAYVIFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIGRRL 308
BLAST of mRNA_Ecto-sp13_S_contig6765.17686.1 vs. uniprot
Match: D7G550_ECTSI (Integrin alpha chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G550_ECTSI) HSP 1 Score: 549 bits (1414), Expect = 4.080e-192 Identity = 286/308 (92.86%), Postives = 297/308 (96.43%), Query Frame = 1
Query: 1 MTLLVVCLARRGVIEAGFFLSALLYPLAAAAGTFQPNVNASSSPRIYNASEINEDWLGYSCASVGDVNGDSLMDVIVGAYGSSHLSEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSIKMELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDGFGDILVGSPTAGAVSQGHTYLVFGGAGLPGRVNLTESDDVTGGNEGVVVFKGALTGEVYESGFSVSGGFDMNGDGLSDFMIGAPEGGTIGEFDGEAYVVFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIG 924
MTL VVC ARRGV+EAGFFLSALL PLAAAAGTFQ NVNASSSPRIYNASE+NEDWLGYSCAS+GDVNGDSLMDV+VG+YGSSHLSEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSI++ELYAKL+SDTLDRQLSLQYTGNPLSSAGDVNGDG+GDILVGSPTAGAV QGHTYLVFGGAGLP RVNLTESDDVTGGNEGVVVFKGALT E SGFSVSGGFDMNGDGLSDF+IGAPEGGT GEFDGEAYV+FGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIG
Sbjct: 1 MTLFVVCPARRGVVEAGFFLSALLCPLAAAAGTFQSNVNASSSPRIYNASEMNEDWLGYSCASIGDVNGDSLMDVMVGSYGSSHLSEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSIEIELYAKLISDTLDRQLSLQYTGNPLSSAGDVNGDGYGDILVGSPTAGAVYQGHTYLVFGGAGLPSRVNLTESDDVTGGNEGVVVFKGALTDE---SGFSVSGGFDMNGDGLSDFIIGAPEGGTTGEFDGEAYVIFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIG 305
BLAST of mRNA_Ecto-sp13_S_contig6765.17686.1 vs. uniprot
Match: A0A6H5L9N8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9N8_9PHAE) HSP 1 Score: 531 bits (1369), Expect = 6.950e-188 Identity = 297/397 (74.81%), Postives = 306/397 (77.08%), Query Frame = 1
Query: 1 MTLLVVCLARRGVIEAGFFLSALLYPLAAAAGTFQPNVNASSSPRIYNASEINEDWLGYSCASVGD-------------------------------------------------------------------------VNGDSLMDVIVGAYGSSHLSEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSIKMELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDGFGDILVGSPTAGAVSQGHTYLVFGGAGLPGRVNLTESDDVTGGNEGVVVFKGALTGE------------VYESGFSVSGGFDMNGDGLSDFMIGAPEGGTIGEFDGEAYVVFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIGVRLF 936
MT LVVCLARRGVIEAGFFLSALL PLAAAAGTF+ NVNASSSPRIYNASEINEDWLGYSCAS+GD VNGDSLMDV+VGAYGSSHLSEGAAHVVYGTNTSAAYD+SFLDLGAG GGGLDGVDGFTLSGMSI++ELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDG+GDILVGSPTAGAVSQGHTYLVFGGAGLPGRVNLTESDDV GGNEGVVVFKGALTGE + ESGFSVSGGFDMNGDGLSDF+IGAPEGGTIGEFDGEAYVVFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIGVRLF
Sbjct: 1 MTFLVVCLARRGVIEAGFFLSALLCPLAAAAGTFRSNVNASSSPRIYNASEINEDWLGYSCASIGDFNGDGVGDIVIGAPGASDGVGRAYVVYGNSSGIDEDFDVSALEDRDSAGLVMTGRQGGTFSHSIGYAVAAAGDVNGDSLMDVMVGAYGSSHLSEGAAHVVYGTNTSAAYDSSFLDLGAGDGGGLDGVDGFTLSGMSIEIELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDGYGDILVGSPTAGAVSQGHTYLVFGGAGLPGRVNLTESDDVAGGNEGVVVFKGALTGEFVIICGFHDLCSIDESGFSVSGGFDMNGDGLSDFIIGAPEGGTIGEFDGEAYVVFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIGVRLF 397
BLAST of mRNA_Ecto-sp13_S_contig6765.17686.1 vs. uniprot
Match: A0A2R8C5B0_9RHOB (Uncharacterized protein n=2 Tax=Falsiruegeria TaxID=2854184 RepID=A0A2R8C5B0_9RHOB) HSP 1 Score: 129 bits (325), Expect = 7.110e-30 Identity = 99/259 (38.22%), Postives = 146/259 (56.37%), Query Frame = 1
Query: 163 DWLGYSCASVGDVNGDSLMDVIVGAYGSSH---LSEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSIKMELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDGFGDILVGSPTAGAVSQGHTYLVFGG-AGLPGRVNLTESDDVTGGNEGVVVFKGALTGEVYESGFSVSGGFDMNGDGLSDFMIGAPEGGTIGEFD-GEAYVVFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIG 924
D+ G S +S GDVNGD + D+I+GAYG++ G ++VV+G+ A + A+ L L + L+G +GF + G++ S ++G +SSAGDVNGDG GD+++G+ AG+ +G +Y+VFG AG + L++ V G E +G L G SG SVS D+NGDG+ D +IGAPE G+ + GE+YVVFG + TV+ + LDG+ GF I G + D AG+SV+ G
Sbjct: 62 DYSGGSVSSAGDVNGDGIDDLIIGAYGAAGGATSQAGESYVVFGST--AGFGAT-LPLSS-----LNGANGFVVQGIA------------------SYDFSGGSVSSAGDVNGDGIGDLIIGASGAGSSREGESYVVFGSTAGFGATLPLSDLWQVRNGFE----IQGQLNGN---SGASVSSAGDVNGDGIDDLIIGAPEAEVGGQREVGESYVVFGSTSAFP--TVLYASSLDGSNGFVIEGANSDDTAGNSVSSAG 285
BLAST of mRNA_Ecto-sp13_S_contig6765.17686.1 vs. uniprot
Match: A0A6J4PLY3_9RHOB (RTX toxins and related Ca2+-binding proteins (Fragment) n=1 Tax=uncultured Rubellimicrobium sp. TaxID=543078 RepID=A0A6J4PLY3_9RHOB) HSP 1 Score: 124 bits (310), Expect = 9.050e-29 Identity = 106/260 (40.77%), Postives = 142/260 (54.62%), Query Frame = 1
Query: 163 DWLGYSCASVGDVNGDSLMDVIVGAYGS--SHLSEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSIKMELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDGFGDILVGSPTAG--AVSQGHTYLVFGGAGLPGR-VNLTESDDVTGGNEGVVVFKGALTGEVYESGFSVSGGFDMNGDGLSDFMIGAPEGGTIGEFDGEAYVVFGQENLADSDTVMLD-TDLDGTVGFSILGPSDDAYAGSSVAGIG 924
D G S AS GDVNGD D+I+GA G+ + G+A+VV+G + + AS L LG+ LDG++GF L G++ DT G +SSAGDVNGDGF D++VG+P+AG + G TY+VFG AG G ++L D TG F+ G ++GF+V+ D+NGD L D MI AP G G F G AYVVFG+ AD T +L+ T L+GT GF + G G+S+A G
Sbjct: 27 DAAGRSVASAGDVNGDGFDDMIIGAPGADPNGSQSGSAYVVFGK--AGGFGAS-LSLGS-----LDGMNGFRLDGVAA---------GDT---------AGQSVSSAGDVNGDGFDDLMVGAPSAGPNGSALGTTYVVFGKAGGFGASLDLGSLDGTTG-------FRLNGLGAYEQAGFTVAPAGDVNGDDLDDMMIAAPGSGLAGYFFGSAYVVFGK---ADGFTAILNPTSLNGTNGFRLDGALGFESLGTSLASAG 250
BLAST of mRNA_Ecto-sp13_S_contig6765.17686.1 vs. uniprot
Match: UPI001F3C3DBB (hypothetical protein n=1 Tax=Algimonas arctica TaxID=1479486 RepID=UPI001F3C3DBB) HSP 1 Score: 125 bits (314), Expect = 3.040e-28 Identity = 98/262 (37.40%), Postives = 139/262 (53.05%), Query Frame = 1
Query: 160 EDWLGYSCASVGDVNGDSLMDVIVGA-YG--SSHLSEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSIKMELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDGFGDILVGSPTA---GAVSQGHTYLVFGGAGLPGRVNLTESDDVTGGNEGVVVFKGALTGEVYESGFSVSGGFDMNGDGLSDFMIGAPEGGTIGEFD-GEAYVVFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIG 924
+D+ GYS +S GDVNGD D+I+GA Y + + + G+++VV+G TS + F DL LDG +GF L G+ Y+G ++SAGDVNGDGF D+++G+ AV+ G TY+VFGGA PG + + + G N V G + + ESGFSVS D+NGDG D +IGAP + G + G +YVVFG + + + LDGT GF + G Y+G+SV+ G
Sbjct: 622 QDYSGYSVSSAGDVNGDGFDDLIIGARYADPNENNTAGSSYVVFGGATSPGSNGIF-DLST-----LDGSNGFRLDGLDAN------------------DYSGGTVASAGDVNGDGFDDLIIGARAGDPNSAVNSGETYVVFGGATAPGVDGVFDLSTLDGTNGFQV--NGVIATD--ESGFSVSSAGDVNGDGYDDLIIGAPLADSNGNPNTGVSYVVFGGATAPGASGMFDLSTLDGTNGFRLNGVDASDYSGASVSSAG 855
BLAST of mRNA_Ecto-sp13_S_contig6765.17686.1 vs. uniprot
Match: UPI001989DBF6 (FG-GAP repeat protein n=1 Tax=Sphingomonadaceae bacterium TaxID=1930536 RepID=UPI001989DBF6) HSP 1 Score: 125 bits (313), Expect = 3.850e-28 Identity = 94/262 (35.88%), Postives = 140/262 (53.44%), Query Frame = 1
Query: 163 DWLGYSCASVGDVNGDSLMDVIVGAY---GSSHLSEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSIKMELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDGFGDILVGSPTA---GAVSQGHTYLVFGGA-GLPGRVNLTESDDVTGGNEGVVVFKGALTGEVYESGFSVSGGFDMNGDGLSDFMIGAPEGGTIG-EFDGEAYVVFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIG 924
D G+S +S GDVNGD D+++GA GS+ G ++VV+G +DA LGA L+G +GF ++G+ I +G+ ++ AGDVNGDGFGDI++G+P+A G + G +Y+VFG A G + L + D G F+ +SGFSVS D+NGDG D ++G+PE G GEAYVVFG+ + D+ ++ + LDG GF ++GP+ + G SV+ +G
Sbjct: 217 DQAGWSVSSAGDVNGDGFDDMVIGAPAADGSASTQAGESYVVFGMADG--FDAQMY-LGA-----LNGANGFRINGIDIS------------------DLSGSSVADAGDVNGDGFGDIIIGAPSANPGGRNNAGESYVVFGKASGFAASLELAQLDGSNG-------FRLDGISANDQSGFSVSAAGDVNGDGFGDILVGSPEADAGGFSLAGEAYVVFGKSSAFDASLIL--SALDGINGFRVIGPARNDVRGCSVSSVG 443
BLAST of mRNA_Ecto-sp13_S_contig6765.17686.1 vs. uniprot
Match: A0A2W1JGC4_9CYAN (Bifunctional hemolysin/adenylate cyclase n=1 Tax=Acaryochloris thomasi RCC1774 TaxID=1764569 RepID=A0A2W1JGC4_9CYAN) HSP 1 Score: 124 bits (312), Expect = 5.250e-28 Identity = 102/283 (36.04%), Postives = 148/283 (52.30%), Query Frame = 1
Query: 109 NVNASSSPRIYNASEINEDWLGYSCASVGDVNGDSLMDVIVGAYGSSHL----SEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSIKMELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDGFGDILVGSPTAGAVS---QGHTYLVFGGAGLPGRVNLTESDDVTGGN----EGVVVFKGALTGEVYESGFSVSGGFDMNGDGLSDFMIGAPEGGTIGEFDGEAYVVFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIG 924
++N S+ I S +E G+S +S GDVNGD L D+I+GA L E ++VV+G ++ S L+L L+G +GFT++G+S+ GN +SSAGDVNGDG DI++G+P A G +Y+VFG + +NL+ D+ G N G+ F ESGFSVS D+NGDG+ D ++GAP +GE+ GE+YV+FG + TV L +DL+G+ GF+I G S +G SV+ G
Sbjct: 84 DLNGSNGFTINGISPFDES--GFSVSSAGDVNGDGLDDIIIGAPRRRPLRPIPKEAESYVVFGHSSF----GSILNLSD-----LNGSNGFTINGISVYDNF------------------GNSVSSAGDVNGDGLDDIIIGAPNADPNEIRLAGESYVVFGRSSFESNLNLS---DLNGSNGFTINGISPFD--------ESGFSVSSAGDVNGDGIDDIIVGAPHPTNVGEYSGESYVIFGSTSF--ESTVNL-SDLNGSNGFTINGISPFDESGFSVSSAG 323
BLAST of mRNA_Ecto-sp13_S_contig6765.17686.1 vs. uniprot
Match: UPI001867AB2B (FG-GAP repeat protein n=1 Tax=Fluviibacterium sp. MJW13 TaxID=2720031 RepID=UPI001867AB2B) HSP 1 Score: 124 bits (310), Expect = 7.580e-28 Identity = 101/267 (37.83%), Postives = 147/267 (55.06%), Query Frame = 1
Query: 163 DWLGYSCASVGDVNGDSLMDVIVGAYGSSH---LSEGAAHVVYGTNTSAAYD-ASFLDLGAGGGGGLDGVDGFTLSGMSIKMELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDGFGDILVGSPTA---GAVSQGHTYLVFG-GAGLPGRVNLTESDDVTGGNEGVVVFKGALTG-EVYE-SGFSVSGGFDMNGDGLSDFMIGAPEGGTIGEFD-GEAYVVFGQENLADSD-TVMLD-TDLDGTVGFSILGPSDDAYAGSSVAGIG 924
D+ G+S AS GDVNGD + D+++GA+G+ + G A++V+G +T+ D A+ +DL + L+G +GF L+G+ D D YTG +++AGD+NGDG DIL+GS +A G +S G TY+VFG + G N S D+ G LTG + Y+ SG SV+ D+NGDG D +IGA G T G + GE YVVFG++ D +D +LDG++GF + G + +G SVA G
Sbjct: 303 DYSGWSVASAGDVNGDGIDDILIGAFGADQAGTFNAGGAYIVFGKDTAVEGDFAASMDLAS-----LNGSNGFALTGI------------DAFD------YTGYSVAAAGDINGDGIDDILIGSTSADRPGTLSSGETYVVFGKDTAVAG--NFAASIDLASFAAGDGSTGFVLTGIDSYDYSGVSVAAAGDVNGDGFDDIVIGAYGGDTAGTQNVGETYVVFGKDTSVTGDFAASIDLANLDGSMGFVLTGVDAEDESGISVASAG 544
BLAST of mRNA_Ecto-sp13_S_contig6765.17686.1 vs. uniprot
Match: UPI000FD7EDD0 (VCBS domain-containing protein n=1 Tax=Rhodobacterales TaxID=204455 RepID=UPI000FD7EDD0) HSP 1 Score: 124 bits (310), Expect = 9.470e-28 Identity = 96/268 (35.82%), Postives = 142/268 (52.99%), Query Frame = 1
Query: 163 DWLGYSCASVGDVNGDSLMDVIVGA-YGSSHLSE-GAAHVVYGTNTSAAYD-ASFLDLGAGGGGGLDGVDGFTLSGMSIKMELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDGFGDILVGSPTA---GAVSQGHTYLVFG-----GAGLPGRVNLTESDDVTGGNEGVVVFKGALTGEVYESGFSVSGGFDMNGDGLSDFMIGAPEGGTIGEFDGEAYVVFGQENLADSD---TVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIG 924
D GYS ++ GDVNGD + D+++GA +G + S G A++VYG +T + D + LDL A LDG +GF L ++ + + + G +++AGD+N DG GDI++GS A G G +++VFG P V+L + D G V G + SGFSV+ D+NGDG+ D +IGAP+G G GE Y++FG++ +D D TV LD LDG GF GP+ A++G +V+ G
Sbjct: 622 DQSGYSVSAAGDVNGDGIDDLLIGAPFGDTGASSTGEAYIVYGRDTEVSGDFGAALDLSA-----LDGTNGFAL--------VFGEASA----------FAGFSVAAAGDINNDGIGDIIIGSYGANPDGVNDAGQSFVVFGRDAATDGDFPASVDLGDLDGTDG-----FVLNGIDADD--RSGFSVASAGDVNGDGIDDLLIGAPQGDAGGGSSGETYLIFGRDTDSDGDFAATVDLDA-LDGATGFVFAGPASGAFSGHAVSAAG 858 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6765.17686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6765.17686.1 >prot_Ecto-sp13_S_contig6765.17686.1 ID=prot_Ecto-sp13_S_contig6765.17686.1|Name=mRNA_Ecto-sp13_S_contig6765.17686.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=318bp MTLLVVCLARRGVIEAGFFLSALLYPLAAAAGTFQPNVNASSSPRIYNASback to top mRNA from alignment at Ecto-sp13_S_contig6765:51..3911- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6765.17686.1 ID=mRNA_Ecto-sp13_S_contig6765.17686.1|Name=mRNA_Ecto-sp13_S_contig6765.17686.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3861bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6765:51..3911- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6765:51..3911- >mRNA_Ecto-sp13_S_contig6765.17686.1 ID=mRNA_Ecto-sp13_S_contig6765.17686.1|Name=mRNA_Ecto-sp13_S_contig6765.17686.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=954bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6765:51..3911- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |