mRNA_Ecto-sp13_S_contig6765.17686.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6765.17686.1
Unique NamemRNA_Ecto-sp13_S_contig6765.17686.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6765.17686.1 vs. uniprot
Match: D7G3P0_ECTSI (Integrins alpha chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P0_ECTSI)

HSP 1 Score: 552 bits (1423), Expect = 1.630e-197
Identity = 289/311 (92.93%), Postives = 299/311 (96.14%), Query Frame = 1
Query:    1 MTLLVVCLARRGVIEAGFFLSALLYPLAAAAGTFQPNVNASSSPRIYNASEINEDWLGYSCASVGDVNGDSLMDVIVGAYGSSHLSEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSIKMELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDGFGDILVGSPTAGAVSQGHTYLVFGGAGLPGRVNLTESDDVTGGNEGVVVFKGALTGEVYESGFSVSGGFDMNGDGLSDFMIGAPEGGTIGEFDGEAYVVFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIGVRL 933
            MTL VVC ARRGVIEAGFFLSALL PLAAAAGTFQ NVNASSSPRIYNASE+NEDWLGYSCAS+GDVNGDSLMDV+VG+YGSSHLSEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSI++ELYAKL+SDTLDRQLSLQYTGNPLSSAGDVNGDG+GDILVGSPTAGAV QGHTYLVFGGAGLP RVNLTESDDVTGGNEGVVVFKGALT E   SGFSVSGGFDMNGDGLSDF+IGAPEGGT GEFDGEAYV+FGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIG RL
Sbjct:    1 MTLFVVCPARRGVIEAGFFLSALLCPLAAAAGTFQSNVNASSSPRIYNASEMNEDWLGYSCASIGDVNGDSLMDVMVGSYGSSHLSEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSIEIELYAKLISDTLDRQLSLQYTGNPLSSAGDVNGDGYGDILVGSPTAGAVYQGHTYLVFGGAGLPSRVNLTESDDVTGGNEGVVVFKGALTDE---SGFSVSGGFDMNGDGLSDFIIGAPEGGTTGEFDGEAYVIFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIGRRL 308          
BLAST of mRNA_Ecto-sp13_S_contig6765.17686.1 vs. uniprot
Match: D7G550_ECTSI (Integrin alpha chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G550_ECTSI)

HSP 1 Score: 549 bits (1414), Expect = 4.080e-192
Identity = 286/308 (92.86%), Postives = 297/308 (96.43%), Query Frame = 1
Query:    1 MTLLVVCLARRGVIEAGFFLSALLYPLAAAAGTFQPNVNASSSPRIYNASEINEDWLGYSCASVGDVNGDSLMDVIVGAYGSSHLSEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSIKMELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDGFGDILVGSPTAGAVSQGHTYLVFGGAGLPGRVNLTESDDVTGGNEGVVVFKGALTGEVYESGFSVSGGFDMNGDGLSDFMIGAPEGGTIGEFDGEAYVVFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIG 924
            MTL VVC ARRGV+EAGFFLSALL PLAAAAGTFQ NVNASSSPRIYNASE+NEDWLGYSCAS+GDVNGDSLMDV+VG+YGSSHLSEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSI++ELYAKL+SDTLDRQLSLQYTGNPLSSAGDVNGDG+GDILVGSPTAGAV QGHTYLVFGGAGLP RVNLTESDDVTGGNEGVVVFKGALT E   SGFSVSGGFDMNGDGLSDF+IGAPEGGT GEFDGEAYV+FGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIG
Sbjct:    1 MTLFVVCPARRGVVEAGFFLSALLCPLAAAAGTFQSNVNASSSPRIYNASEMNEDWLGYSCASIGDVNGDSLMDVMVGSYGSSHLSEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSIEIELYAKLISDTLDRQLSLQYTGNPLSSAGDVNGDGYGDILVGSPTAGAVYQGHTYLVFGGAGLPSRVNLTESDDVTGGNEGVVVFKGALTDE---SGFSVSGGFDMNGDGLSDFIIGAPEGGTTGEFDGEAYVIFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIG 305          
BLAST of mRNA_Ecto-sp13_S_contig6765.17686.1 vs. uniprot
Match: A0A6H5L9N8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9N8_9PHAE)

HSP 1 Score: 531 bits (1369), Expect = 6.950e-188
Identity = 297/397 (74.81%), Postives = 306/397 (77.08%), Query Frame = 1
Query:    1 MTLLVVCLARRGVIEAGFFLSALLYPLAAAAGTFQPNVNASSSPRIYNASEINEDWLGYSCASVGD-------------------------------------------------------------------------VNGDSLMDVIVGAYGSSHLSEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSIKMELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDGFGDILVGSPTAGAVSQGHTYLVFGGAGLPGRVNLTESDDVTGGNEGVVVFKGALTGE------------VYESGFSVSGGFDMNGDGLSDFMIGAPEGGTIGEFDGEAYVVFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIGVRLF 936
            MT LVVCLARRGVIEAGFFLSALL PLAAAAGTF+ NVNASSSPRIYNASEINEDWLGYSCAS+GD                                                                         VNGDSLMDV+VGAYGSSHLSEGAAHVVYGTNTSAAYD+SFLDLGAG GGGLDGVDGFTLSGMSI++ELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDG+GDILVGSPTAGAVSQGHTYLVFGGAGLPGRVNLTESDDV GGNEGVVVFKGALTGE            + ESGFSVSGGFDMNGDGLSDF+IGAPEGGTIGEFDGEAYVVFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIGVRLF
Sbjct:    1 MTFLVVCLARRGVIEAGFFLSALLCPLAAAAGTFRSNVNASSSPRIYNASEINEDWLGYSCASIGDFNGDGVGDIVIGAPGASDGVGRAYVVYGNSSGIDEDFDVSALEDRDSAGLVMTGRQGGTFSHSIGYAVAAAGDVNGDSLMDVMVGAYGSSHLSEGAAHVVYGTNTSAAYDSSFLDLGAGDGGGLDGVDGFTLSGMSIEIELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDGYGDILVGSPTAGAVSQGHTYLVFGGAGLPGRVNLTESDDVAGGNEGVVVFKGALTGEFVIICGFHDLCSIDESGFSVSGGFDMNGDGLSDFIIGAPEGGTIGEFDGEAYVVFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIGVRLF 397          
BLAST of mRNA_Ecto-sp13_S_contig6765.17686.1 vs. uniprot
Match: A0A2R8C5B0_9RHOB (Uncharacterized protein n=2 Tax=Falsiruegeria TaxID=2854184 RepID=A0A2R8C5B0_9RHOB)

HSP 1 Score: 129 bits (325), Expect = 7.110e-30
Identity = 99/259 (38.22%), Postives = 146/259 (56.37%), Query Frame = 1
Query:  163 DWLGYSCASVGDVNGDSLMDVIVGAYGSSH---LSEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSIKMELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDGFGDILVGSPTAGAVSQGHTYLVFGG-AGLPGRVNLTESDDVTGGNEGVVVFKGALTGEVYESGFSVSGGFDMNGDGLSDFMIGAPEGGTIGEFD-GEAYVVFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIG 924
            D+ G S +S GDVNGD + D+I+GAYG++       G ++VV+G+   A + A+ L L +     L+G +GF + G++                  S  ++G  +SSAGDVNGDG GD+++G+  AG+  +G +Y+VFG  AG    + L++   V  G E     +G L G    SG SVS   D+NGDG+ D +IGAPE    G+ + GE+YVVFG  +     TV+  + LDG+ GF I G + D  AG+SV+  G
Sbjct:   62 DYSGGSVSSAGDVNGDGIDDLIIGAYGAAGGATSQAGESYVVFGST--AGFGAT-LPLSS-----LNGANGFVVQGIA------------------SYDFSGGSVSSAGDVNGDGIGDLIIGASGAGSSREGESYVVFGSTAGFGATLPLSDLWQVRNGFE----IQGQLNGN---SGASVSSAGDVNGDGIDDLIIGAPEAEVGGQREVGESYVVFGSTSAFP--TVLYASSLDGSNGFVIEGANSDDTAGNSVSSAG 285          
BLAST of mRNA_Ecto-sp13_S_contig6765.17686.1 vs. uniprot
Match: A0A6J4PLY3_9RHOB (RTX toxins and related Ca2+-binding proteins (Fragment) n=1 Tax=uncultured Rubellimicrobium sp. TaxID=543078 RepID=A0A6J4PLY3_9RHOB)

HSP 1 Score: 124 bits (310), Expect = 9.050e-29
Identity = 106/260 (40.77%), Postives = 142/260 (54.62%), Query Frame = 1
Query:  163 DWLGYSCASVGDVNGDSLMDVIVGAYGS--SHLSEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSIKMELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDGFGDILVGSPTAG--AVSQGHTYLVFGGAGLPGR-VNLTESDDVTGGNEGVVVFKGALTGEVYESGFSVSGGFDMNGDGLSDFMIGAPEGGTIGEFDGEAYVVFGQENLADSDTVMLD-TDLDGTVGFSILGPSDDAYAGSSVAGIG 924
            D  G S AS GDVNGD   D+I+GA G+  +    G+A+VV+G   +  + AS L LG+     LDG++GF L G++           DT          G  +SSAGDVNGDGF D++VG+P+AG    + G TY+VFG AG  G  ++L   D  TG       F+    G   ++GF+V+   D+NGD L D MI AP  G  G F G AYVVFG+   AD  T +L+ T L+GT GF + G       G+S+A  G
Sbjct:   27 DAAGRSVASAGDVNGDGFDDMIIGAPGADPNGSQSGSAYVVFGK--AGGFGAS-LSLGS-----LDGMNGFRLDGVAA---------GDT---------AGQSVSSAGDVNGDGFDDLMVGAPSAGPNGSALGTTYVVFGKAGGFGASLDLGSLDGTTG-------FRLNGLGAYEQAGFTVAPAGDVNGDDLDDMMIAAPGSGLAGYFFGSAYVVFGK---ADGFTAILNPTSLNGTNGFRLDGALGFESLGTSLASAG 250          
BLAST of mRNA_Ecto-sp13_S_contig6765.17686.1 vs. uniprot
Match: UPI001F3C3DBB (hypothetical protein n=1 Tax=Algimonas arctica TaxID=1479486 RepID=UPI001F3C3DBB)

HSP 1 Score: 125 bits (314), Expect = 3.040e-28
Identity = 98/262 (37.40%), Postives = 139/262 (53.05%), Query Frame = 1
Query:  160 EDWLGYSCASVGDVNGDSLMDVIVGA-YG--SSHLSEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSIKMELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDGFGDILVGSPTA---GAVSQGHTYLVFGGAGLPGRVNLTESDDVTGGNEGVVVFKGALTGEVYESGFSVSGGFDMNGDGLSDFMIGAPEGGTIGEFD-GEAYVVFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIG 924
            +D+ GYS +S GDVNGD   D+I+GA Y   + + + G+++VV+G  TS   +  F DL       LDG +GF L G+                      Y+G  ++SAGDVNGDGF D+++G+       AV+ G TY+VFGGA  PG   + +   + G N   V   G +  +  ESGFSVS   D+NGDG  D +IGAP   + G  + G +YVVFG      +  +   + LDGT GF + G     Y+G+SV+  G
Sbjct:  622 QDYSGYSVSSAGDVNGDGFDDLIIGARYADPNENNTAGSSYVVFGGATSPGSNGIF-DLST-----LDGSNGFRLDGLDAN------------------DYSGGTVASAGDVNGDGFDDLIIGARAGDPNSAVNSGETYVVFGGATAPGVDGVFDLSTLDGTNGFQV--NGVIATD--ESGFSVSSAGDVNGDGYDDLIIGAPLADSNGNPNTGVSYVVFGGATAPGASGMFDLSTLDGTNGFRLNGVDASDYSGASVSSAG 855          
BLAST of mRNA_Ecto-sp13_S_contig6765.17686.1 vs. uniprot
Match: UPI001989DBF6 (FG-GAP repeat protein n=1 Tax=Sphingomonadaceae bacterium TaxID=1930536 RepID=UPI001989DBF6)

HSP 1 Score: 125 bits (313), Expect = 3.850e-28
Identity = 94/262 (35.88%), Postives = 140/262 (53.44%), Query Frame = 1
Query:  163 DWLGYSCASVGDVNGDSLMDVIVGAY---GSSHLSEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSIKMELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDGFGDILVGSPTA---GAVSQGHTYLVFGGA-GLPGRVNLTESDDVTGGNEGVVVFKGALTGEVYESGFSVSGGFDMNGDGLSDFMIGAPEGGTIG-EFDGEAYVVFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIG 924
            D  G+S +S GDVNGD   D+++GA    GS+    G ++VV+G      +DA    LGA     L+G +GF ++G+ I                     +G+ ++ AGDVNGDGFGDI++G+P+A   G  + G +Y+VFG A G    + L + D   G       F+        +SGFSVS   D+NGDG  D ++G+PE    G    GEAYVVFG+ +  D+  ++  + LDG  GF ++GP+ +   G SV+ +G
Sbjct:  217 DQAGWSVSSAGDVNGDGFDDMVIGAPAADGSASTQAGESYVVFGMADG--FDAQMY-LGA-----LNGANGFRINGIDIS------------------DLSGSSVADAGDVNGDGFGDIIIGAPSANPGGRNNAGESYVVFGKASGFAASLELAQLDGSNG-------FRLDGISANDQSGFSVSAAGDVNGDGFGDILVGSPEADAGGFSLAGEAYVVFGKSSAFDASLIL--SALDGINGFRVIGPARNDVRGCSVSSVG 443          
BLAST of mRNA_Ecto-sp13_S_contig6765.17686.1 vs. uniprot
Match: A0A2W1JGC4_9CYAN (Bifunctional hemolysin/adenylate cyclase n=1 Tax=Acaryochloris thomasi RCC1774 TaxID=1764569 RepID=A0A2W1JGC4_9CYAN)

HSP 1 Score: 124 bits (312), Expect = 5.250e-28
Identity = 102/283 (36.04%), Postives = 148/283 (52.30%), Query Frame = 1
Query:  109 NVNASSSPRIYNASEINEDWLGYSCASVGDVNGDSLMDVIVGAYGSSHL----SEGAAHVVYGTNTSAAYDASFLDLGAGGGGGLDGVDGFTLSGMSIKMELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDGFGDILVGSPTAGAVS---QGHTYLVFGGAGLPGRVNLTESDDVTGGN----EGVVVFKGALTGEVYESGFSVSGGFDMNGDGLSDFMIGAPEGGTIGEFDGEAYVVFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIG 924
            ++N S+   I   S  +E   G+S +S GDVNGD L D+I+GA     L     E  ++VV+G ++      S L+L       L+G +GFT++G+S+                      GN +SSAGDVNGDG  DI++G+P A        G +Y+VFG +     +NL+   D+ G N     G+  F         ESGFSVS   D+NGDG+ D ++GAP    +GE+ GE+YV+FG  +     TV L +DL+G+ GF+I G S    +G SV+  G
Sbjct:   84 DLNGSNGFTINGISPFDES--GFSVSSAGDVNGDGLDDIIIGAPRRRPLRPIPKEAESYVVFGHSSF----GSILNLSD-----LNGSNGFTINGISVYDNF------------------GNSVSSAGDVNGDGLDDIIIGAPNADPNEIRLAGESYVVFGRSSFESNLNLS---DLNGSNGFTINGISPFD--------ESGFSVSSAGDVNGDGIDDIIVGAPHPTNVGEYSGESYVIFGSTSF--ESTVNL-SDLNGSNGFTINGISPFDESGFSVSSAG 323          
BLAST of mRNA_Ecto-sp13_S_contig6765.17686.1 vs. uniprot
Match: UPI001867AB2B (FG-GAP repeat protein n=1 Tax=Fluviibacterium sp. MJW13 TaxID=2720031 RepID=UPI001867AB2B)

HSP 1 Score: 124 bits (310), Expect = 7.580e-28
Identity = 101/267 (37.83%), Postives = 147/267 (55.06%), Query Frame = 1
Query:  163 DWLGYSCASVGDVNGDSLMDVIVGAYGSSH---LSEGAAHVVYGTNTSAAYD-ASFLDLGAGGGGGLDGVDGFTLSGMSIKMELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDGFGDILVGSPTA---GAVSQGHTYLVFG-GAGLPGRVNLTESDDVTGGNEGVVVFKGALTG-EVYE-SGFSVSGGFDMNGDGLSDFMIGAPEGGTIGEFD-GEAYVVFGQENLADSD-TVMLD-TDLDGTVGFSILGPSDDAYAGSSVAGIG 924
            D+ G+S AS GDVNGD + D+++GA+G+      + G A++V+G +T+   D A+ +DL +     L+G +GF L+G+            D  D      YTG  +++AGD+NGDG  DIL+GS +A   G +S G TY+VFG    + G  N   S D+     G       LTG + Y+ SG SV+   D+NGDG  D +IGA  G T G  + GE YVVFG++     D    +D  +LDG++GF + G   +  +G SVA  G
Sbjct:  303 DYSGWSVASAGDVNGDGIDDILIGAFGADQAGTFNAGGAYIVFGKDTAVEGDFAASMDLAS-----LNGSNGFALTGI------------DAFD------YTGYSVAAAGDINGDGIDDILIGSTSADRPGTLSSGETYVVFGKDTAVAG--NFAASIDLASFAAGDGSTGFVLTGIDSYDYSGVSVAAAGDVNGDGFDDIVIGAYGGDTAGTQNVGETYVVFGKDTSVTGDFAASIDLANLDGSMGFVLTGVDAEDESGISVASAG 544          
BLAST of mRNA_Ecto-sp13_S_contig6765.17686.1 vs. uniprot
Match: UPI000FD7EDD0 (VCBS domain-containing protein n=1 Tax=Rhodobacterales TaxID=204455 RepID=UPI000FD7EDD0)

HSP 1 Score: 124 bits (310), Expect = 9.470e-28
Identity = 96/268 (35.82%), Postives = 142/268 (52.99%), Query Frame = 1
Query:  163 DWLGYSCASVGDVNGDSLMDVIVGA-YGSSHLSE-GAAHVVYGTNTSAAYD-ASFLDLGAGGGGGLDGVDGFTLSGMSIKMELYAKLLSDTLDRQLSLQYTGNPLSSAGDVNGDGFGDILVGSPTA---GAVSQGHTYLVFG-----GAGLPGRVNLTESDDVTGGNEGVVVFKGALTGEVYESGFSVSGGFDMNGDGLSDFMIGAPEGGTIGEFDGEAYVVFGQENLADSD---TVMLDTDLDGTVGFSILGPSDDAYAGSSVAGIG 924
            D  GYS ++ GDVNGD + D+++GA +G +  S  G A++VYG +T  + D  + LDL A     LDG +GF L        ++ +  +          + G  +++AGD+N DG GDI++GS  A   G    G +++VFG         P  V+L + D   G      V  G    +   SGFSV+   D+NGDG+ D +IGAP+G   G   GE Y++FG++  +D D   TV LD  LDG  GF   GP+  A++G +V+  G
Sbjct:  622 DQSGYSVSAAGDVNGDGIDDLLIGAPFGDTGASSTGEAYIVYGRDTEVSGDFGAALDLSA-----LDGTNGFAL--------VFGEASA----------FAGFSVAAAGDINNDGIGDIIIGSYGANPDGVNDAGQSFVVFGRDAATDGDFPASVDLGDLDGTDG-----FVLNGIDADD--RSGFSVASAGDVNGDGIDDLLIGAPQGDAGGGSSGETYLIFGRDTDSDGDFAATVDLDA-LDGATGFVFAGPASGAFSGHAVSAAG 858          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6765.17686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3P0_ECTSI1.630e-19792.93Integrins alpha chain n=1 Tax=Ectocarpus siliculos... [more]
D7G550_ECTSI4.080e-19292.86Integrin alpha chain n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5L9N8_9PHAE6.950e-18874.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2R8C5B0_9RHOB7.110e-3038.22Uncharacterized protein n=2 Tax=Falsiruegeria TaxI... [more]
A0A6J4PLY3_9RHOB9.050e-2940.77RTX toxins and related Ca2+-binding proteins (Frag... [more]
UPI001F3C3DBB3.040e-2837.40hypothetical protein n=1 Tax=Algimonas arctica Tax... [more]
UPI001989DBF63.850e-2835.88FG-GAP repeat protein n=1 Tax=Sphingomonadaceae ba... [more]
A0A2W1JGC4_9CYAN5.250e-2836.04Bifunctional hemolysin/adenylate cyclase n=1 Tax=A... [more]
UPI001867AB2B7.580e-2837.83FG-GAP repeat protein n=1 Tax=Fluviibacterium sp. ... [more]
UPI000FD7EDD09.470e-2835.82VCBS domain-containing protein n=1 Tax=Rhodobacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6765contigEcto-sp13_S_contig6765:51..3911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score556.2
Seed ortholog evalue9.8e-156
Seed eggNOG ortholog2880.D7G3P0
Model size954
KEGG koko:K06484
KEGG Pathwayko04145,ko04151,ko04510,ko04512,ko04640,ko04810,ko05100,ko05131,ko05133,ko05165,ko05205,ko05206,ko05410,ko05412,ko05414,map04145,map04151,map04510,map04512,map04640,map04810,map05100,map05131,map05133,map05165,map05205,map05206,map05410,map05412,map05414
Hectar predicted targeting categorysignal peptide
Exons5
EggNOG free text desc.integrin-mediated signaling pathway
EggNOG OGsKOG3637@1,KOG3637@2759
Ec32 ortholog descriptionIntegrin alpha beta-propellor domain protein
Ec32 orthologEc-00_006680.1
Cds size954
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04090,ko04147,ko04516
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463930.2167342-CDS-Ecto-sp13_S_contig6765:50..2001681463930.2167342-CDS-Ecto-sp13_S_contig6765:50..200Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6765 51..200 -
1681463930.2631536-CDS-Ecto-sp13_S_contig6765:593..7241681463930.2631536-CDS-Ecto-sp13_S_contig6765:593..724Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6765 594..724 -
1681463930.2730365-CDS-Ecto-sp13_S_contig6765:1237..14961681463930.2730365-CDS-Ecto-sp13_S_contig6765:1237..1496Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6765 1238..1496 -
1681463930.2821326-CDS-Ecto-sp13_S_contig6765:2102..23201681463930.2821326-CDS-Ecto-sp13_S_contig6765:2102..2320Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6765 2103..2320 -
1681463930.3061216-CDS-Ecto-sp13_S_contig6765:3715..39111681463930.3061216-CDS-Ecto-sp13_S_contig6765:3715..3911Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6765 3716..3911 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6765.17686.1prot_Ecto-sp13_S_contig6765.17686.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6765 51..3911 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6765.17686.1

>prot_Ecto-sp13_S_contig6765.17686.1 ID=prot_Ecto-sp13_S_contig6765.17686.1|Name=mRNA_Ecto-sp13_S_contig6765.17686.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=318bp
MTLLVVCLARRGVIEAGFFLSALLYPLAAAAGTFQPNVNASSSPRIYNAS
EINEDWLGYSCASVGDVNGDSLMDVIVGAYGSSHLSEGAAHVVYGTNTSA
AYDASFLDLGAGGGGGLDGVDGFTLSGMSIKMELYAKLLSDTLDRQLSLQ
YTGNPLSSAGDVNGDGFGDILVGSPTAGAVSQGHTYLVFGGAGLPGRVNL
TESDDVTGGNEGVVVFKGALTGEVYESGFSVSGGFDMNGDGLSDFMIGAP
EGGTIGEFDGEAYVVFGQENLADSDTVMLDTDLDGTVGFSILGPSDDAYA
GSSVAGIGVRLFCWYSR*
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mRNA from alignment at Ecto-sp13_S_contig6765:51..3911-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6765.17686.1 ID=mRNA_Ecto-sp13_S_contig6765.17686.1|Name=mRNA_Ecto-sp13_S_contig6765.17686.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3861bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6765:51..3911- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCCTTCTCGTCGTGTGCCTGGCACGCCGCGGGGTCATCGAAGCAGG CTTCTTTTTGTCGGCACTGCTATATCCACTGGCGGCCGCAGCCGGAACCT TCCAACCAAATGTGAATGCGTCGAGCTCCCCTCGGATCTACAACGCTAGC GAGATCAACGAAGATTGGCTGGGATACTCATGCGCCTCCGTAGGCGGTAA GGGAACATAAGTCAGTGTGTATCGTAACGAAAACATGCACCAACGTACAG CGGACAGCGGTACTACGTCTGGGTGGTCGAATTTCTTGTCAACAGCTACA GGTGCACTGCATGTGCAATGGCGTAGCATTTTGCCGGGAGTAAGGCTCTA ACTTAACTGCGCTGTTTGCTGTGTGCTCCGTCCCTGCTGTCCGAACGATC CCTCCACAGAGAATCTTGTTGTGTGTTCATGGTTGAAGTCGTCTACAGTC TACAGTCGACACGTTCCATCCAATAAACGCCAAAAAAGCAGCGTACATTG ATCCGTTTCATGCAGGTGAACACATGGGTTTTCTTTGGAGAATTGATGCA AGTATAGGTTGGGTACACGCTTAGCCCAGAGGAAGGTCTGCTTCGCGCTT GGTCGCACACAAGTACCGCCCGCGATTAATAACAAAGGTTTAGATTCTGG CGATAACGAAAGAGATATGGACTAAGAAACACACCTCAACAGTGGGTCCT ACACTACATTACCTACTCCGTTTATATAGTGATATGCTTGACGGTGGTGG CGGAATAAAACTTAAGCCTCAAGCATGCACTGACGTTTCTTAAACGCGGG TGTTAACTGTACTACTGTACGCAGACGCACCCATGCCTCACATTCCCTGG ACAGGGTTTTGTTGTGCAAGTTGTCCAATCGATCGCCGGCGGGGGAATAC AAGTCGCACACTGACGATGCAGCATTCTTCCCGGTACAGAGCTGCCCAAT CACTGCTCGCTTTGTCGATTCTGAATGCGTTTGAGGATGCCCACGTCACA AAGCCATGGGCAAATCGTAGGCATGCTGTAACGTTCTCCAACATGACGCG CTCCTACAGATTTCAACGGCGACGGCGTGGGAGACATTGCTGTTGGAGCG CCAGGCGCCAGCGATGGCGTAGGCCGGGCCTACGTAGTGTACGGGAACTC TTCGGGAATCGACGAGAATTTCGACGTGTCGGCTCTGGAAGATCGCGACA GAGCCGGTCTTGTCATGACAGGCAGGCAGGGAGGAACGTTTTCGCACAGC ATTGGGTTCGCCGTGGCTGCAGCAGGGTACGCAAGGGACACGCGGGAAGA TCTCAGAACAAATCAGAACAAACGCCAAACGGTCGTAAGAGGCAACACAC GAACGTATGGTTGGACGAAAACTTTCGATTAAACGAGACACACACGTCTT CCTTCTTATGACTCCCCACATAGGTAGACACTCTTCACGCCACTTGTCTG GGTGCCGCGCAATCATGACTAAGCGTATGACCAAACGTGGAAATGTAGAC ATGCCTCCTAATAGTATGGAAACCTCGGTCTGTTGATACCCTATGTGCCG CAACAAGTCGCTCTTTCTGATTCGCCATACCCTCGACAGAGACGTCAACG GAGATTCCCTGATGGATGTCATTGTGGGCGCCTACGGAAGCTCTCACTTG AGCGAAGGCGCGGCCCATGTCGTGTATGGCACTAATACATCCGCGGCGTA CGACGCTTCTTTCCTCGATCTCGGCGCCGGGGGTGGTGGAGGGCTCGACG GGGTCGACGGCTTCACTCTCTCGGGGATGTCGATAAAAATGGAGCTCTAC GCGAAGCTGGTAAGATGGACCTCTGATGTGGGTCGCTGGTCCTCAGTCGG CCGTGTACGCGAGGGGCATCATCTGTACGGCGGTGATATGGAGAACGGAT GTTCTTGATTTAAAAAGACGAAGAAATGTTCCTCTAGCGCATAAACTGTG ACTTTCTTCAACGGATCTTGTGGTGCCATGTTCTCGTCCCGCCCCCCGGC TCACAGCGTATTTCGTACCAACTCTGTAACATGCTTGAGAGCCGAGGTTT AATACAGCACACACGCCATGCTTGCGGGTTTGTCGGCCAAAGCCGGGCCG GGGGTTCCGTACTACCTTTTTGACAGCGCCCCGTGGGAAGAAAAAATCTC TTTTCGTGAAAAGAACACCCCGCGGCGTTGTCAAAGGTAGGGGGGGAAAG AACCAAACGACCCCCCCCCGCATGATAACCCTGGGCCGTTCTGACCACCG ATGGTTTCTCTTGGGGAAAGAAAGAGGGGCATTGGCATGGCGGGGGGCAT TCTCAAACGAATCGTTAGGCCAATCATATTTTGACACGAACAACCCACAC GACACCGCGTTTGCCGTGATTTCCGCACCCACCCACCCACCCACCCACCC ACCCCGACAATACAGCTCTCCGACACGCTTGACAGGCAACTGTCGTTGCA GTACACCGGGAACCCGCTGTCCTCGGCGGGAGACGTCAACGGGGACGGTT TTGGCGACATCCTTGTCGGTAGCCCGACGGCCGGAGCAGTGTCTCAGGGG CACACCTACCTGGTGTTCGGTGGTGCCGGTCTGCCGGGTAGAGTGAACCT GACGGAATCGGACGACGTGACTGGAGGGAACGAGGGCGTGGTGGTGTTCA AGGGGGCTTTGACAGGCGAAGTTTGTGATTATTTGCGGGTTTTTTTATCT TTGCTCGATTGGTTCTTCCGAGAAAGAGGCCTTTGGGATGATAGAGACGG TCGTGCCGTTTGAAGCCGTGGAATTTCGCCAACTTCTCATAAATGGTCGA CTTTCATATCATGGTAGAATACATGTTTGGAGTTTTTGACGGCGCGGACA CAACCTGACGTCGACTACCAACCGACAGATTTGACGCGCGTGGAAACACA ATGCGACTACGTCTGAACTAAAGCGTCGCAGCCCCGCATTGTGCGGCGTC ATACAGACGCCTCTCTTCCACATACTATCTCGCACAGGGAGGATCCTCAC CCAAGAAGACGGAGCAAAACGTAGAGAGATGTTGCTGTTGGGATTATGGG TCTCGTCTCATACGCCTAGCCGCTGTCAGAAGTATAACTAACCCTCTTGG TGTCCATGCGAACGATGACTTTCCACCCCCCCGCCCCCCCTCATCTCCCA TGTTCGTCGAAATACGCGTCCGCCGCCCCCGGCGCAGACGAATCCGGGTT CTCCGTGTCCGGGGGGTTCGACATGAACGGCGATGGATTGAGTGATTTTA TGATCGGAGCACCGGAAGGGGGAACCATCGGGGAGTTCGACGGGGAGGCG TATGTCGTATTCGGGCAGGTGCGGGGAAAAAATGTGTTTCGGGCTCCCGG CAGGCGCGTAGCACGTGTTGGGTAGGATACCGATCATCAGCTTTCACGTC TGGGCCCACGATCACAAGAAGACTTCAAACATTGTTTAGAGGGCTTGTAT AAACTCGTTTCAGGGTGGTGAATAGTCGTTCCTGTCCAAGACTTCCAGAC ACAGTTTGTACTTGTAGGAACCATGTGCGCGGCGGGAGATCTCTCAAGGT GAGCAACTTCGCCGAACGTTTACACCCACAGTGGCCTAGATATACAGGGA GATGTCCGGTGTACTGGACGATGCACGTTTTAGCGAGAACGGCGCCAATG AGCACGTGCTTAGCCACACACTACGCGGTGACAAATGTATGTTCTCAATT CCGATCGATAGGAAAATCTGGCCGATTCTGACACGGTGATGCTTGACACC GATCTAGATGGGACAGTCGGTTTCAGCATCCTTGGGCCTTCGGATGACGC TTACGCCGGCAGCTCCGTTGCGGGAATCGGGGTGAGGCTGTTTTGTTGGT ATAGTAGATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6765:51..3911-

>mRNA_Ecto-sp13_S_contig6765.17686.1 ID=mRNA_Ecto-sp13_S_contig6765.17686.1|Name=mRNA_Ecto-sp13_S_contig6765.17686.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=954bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6765:51..3911- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCCTTCTCGTCGTGTGCCTGGCACGCCGCGGGGTCATCGAAGCAGG
CTTCTTTTTGTCGGCACTGCTATATCCACTGGCGGCCGCAGCCGGAACCT
TCCAACCAAATGTGAATGCGTCGAGCTCCCCTCGGATCTACAACGCTAGC
GAGATCAACGAAGATTGGCTGGGATACTCATGCGCCTCCGTAGGCGACGT
CAACGGAGATTCCCTGATGGATGTCATTGTGGGCGCCTACGGAAGCTCTC
ACTTGAGCGAAGGCGCGGCCCATGTCGTGTATGGCACTAATACATCCGCG
GCGTACGACGCTTCTTTCCTCGATCTCGGCGCCGGGGGTGGTGGAGGGCT
CGACGGGGTCGACGGCTTCACTCTCTCGGGGATGTCGATAAAAATGGAGC
TCTACGCGAAGCTGCTCTCCGACACGCTTGACAGGCAACTGTCGTTGCAG
TACACCGGGAACCCGCTGTCCTCGGCGGGAGACGTCAACGGGGACGGTTT
TGGCGACATCCTTGTCGGTAGCCCGACGGCCGGAGCAGTGTCTCAGGGGC
ACACCTACCTGGTGTTCGGTGGTGCCGGTCTGCCGGGTAGAGTGAACCTG
ACGGAATCGGACGACGTGACTGGAGGGAACGAGGGCGTGGTGGTGTTCAA
GGGGGCTTTGACAGGCGAAGTTTACGAATCCGGGTTCTCCGTGTCCGGGG
GGTTCGACATGAACGGCGATGGATTGAGTGATTTTATGATCGGAGCACCG
GAAGGGGGAACCATCGGGGAGTTCGACGGGGAGGCGTATGTCGTATTCGG
GCAGGAAAATCTGGCCGATTCTGACACGGTGATGCTTGACACCGATCTAG
ATGGGACAGTCGGTTTCAGCATCCTTGGGCCTTCGGATGACGCTTACGCC
GGCAGCTCCGTTGCGGGAATCGGGGTGAGGCTGTTTTGTTGGTATAGTAG
ATAA
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