mRNA_Ecto-sp13_S_contig67555.17674.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig67555.17674.1
Unique NamemRNA_Ecto-sp13_S_contig67555.17674.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig67555.17674.1 vs. uniprot
Match: D7FJS4_ECTSI (PPM-type phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJS4_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 2.900e-23
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 1
Query:    1 QPTRSFGDAYLKYPEFNGKEGTHRSAGRFLPPPYTPPYITAEPEV 135
            QPTRSFGDAYLKYPEFNGKEGTHRSAGRFLPPPYTPPYITAEPE+
Sbjct:  299 QPTRSFGDAYLKYPEFNGKEGTHRSAGRFLPPPYTPPYITAEPEI 343          
BLAST of mRNA_Ecto-sp13_S_contig67555.17674.1 vs. uniprot
Match: A0A835YJE2_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJE2_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 3.940e-17
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 1
Query:    1 QPTRSFGDAYLKYPEFNGKEGTHRSAGRFLPPPYTPPYITAEPEVR 138
            QPTRS GDAYLKY EFN + G HRSAGR LPPPYTPPYITA+PEV+
Sbjct:  235 QPTRSLGDAYLKYSEFNREAGAHRSAGRHLPPPYTPPYITADPEVQ 280          
BLAST of mRNA_Ecto-sp13_S_contig67555.17674.1 vs. uniprot
Match: A0A7S2V900_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V900_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 9.590e-15
Identity = 36/51 (70.59%), Postives = 38/51 (74.51%), Query Frame = 1
Query:    1 QPTRSFGDAYLKYPEFNGKEGT------HRSAGRFLPPPYTPPYITAEPEV 135
            QPTRS GDAYLKYPEFNG  G       H+S GR +PPPYTPPYITA PEV
Sbjct:  280 QPTRSIGDAYLKYPEFNGPPGQPAGVERHKSRGRHIPPPYTPPYITARPEV 330          
BLAST of mRNA_Ecto-sp13_S_contig67555.17674.1 vs. uniprot
Match: W7TS31_9STRA (Protein phosphatase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TS31_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 4.470e-14
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 1
Query:    1 QPTRSFGDAYLKYPEFNGKEG-THRSAGRFLPPPYTPPYITAEPEVR 138
            QPTR+ GDAYLKY EFNG+   +  SAGR++PPPYTPPYITA PEVR
Sbjct:  147 QPTRALGDAYLKYSEFNGRPNRSDSSAGRYIPPPYTPPYITATPEVR 193          
BLAST of mRNA_Ecto-sp13_S_contig67555.17674.1 vs. uniprot
Match: A0A4D9D382_9STRA (PPM-type phosphatase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D382_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 6.650e-14
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 1
Query:    1 QPTRSFGDAYLKYPEFNGKEG-THRSAGRFLPPPYTPPYITAEPEVR 138
            QPTR+ GDAYLKY EFNG+   +  SAGR++PPPYTPPYITA PEVR
Sbjct:  563 QPTRALGDAYLKYSEFNGRPNRSDSSAGRYIPPPYTPPYITATPEVR 609          
BLAST of mRNA_Ecto-sp13_S_contig67555.17674.1 vs. uniprot
Match: A0A2R5GGL4_9STRA (Protein phosphatase 2C 29 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GGL4_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.510e-11
Identity = 31/48 (64.58%), Postives = 36/48 (75.00%), Query Frame = 1
Query:    1 QPTRSFGDAYLKYPEFNGKEGTHRSAGRFLPPPYTPPYITAEPEVRPR 144
            QPTR+FGD YLKY EF        +AGR++PPPYTPPYITA PEV+ R
Sbjct:  362 QPTRAFGDFYLKYAEFMRGAEEDAAAGRYVPPPYTPPYITATPEVQVR 409          
BLAST of mRNA_Ecto-sp13_S_contig67555.17674.1 vs. uniprot
Match: A0A835YMD2_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMD2_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.510e-11
Identity = 32/46 (69.57%), Postives = 33/46 (71.74%), Query Frame = 1
Query:    1 QPTRSFGDAYLKYPEFNGKEGTHRSAGRFLPPPYTPPYITAEPEVR 138
            QPTRS GDAYLKY EFNG  G   S GRFL PP T PYI  EP+VR
Sbjct:  231 QPTRSLGDAYLKYGEFNGTRGQPASRGRFLDPPCTYPYILTEPQVR 276          
BLAST of mRNA_Ecto-sp13_S_contig67555.17674.1 vs. uniprot
Match: A0A482STI6_9ARCH (Protein serine/threonine phosphatase 2C family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482STI6_9ARCH)

HSP 1 Score: 62.8 bits (151), Expect = 2.560e-10
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 1
Query:    1 QPTRSFGDAYLKYPEFNGKEGTHRSAGRFLPPPYTPPYITAEPEV 135
            Q TRS GDAYLKY EFNG    ++  GR +P PYTPPY++ EPE+
Sbjct:  222 QLTRSLGDAYLKYSEFNGSSDANKPVGRHIPEPYTPPYVSHEPEL 266          
BLAST of mRNA_Ecto-sp13_S_contig67555.17674.1 vs. uniprot
Match: A0A024GCJ0_9STRA (PPM-type phosphatase domain-containing protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GCJ0_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.000e-10
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 1
Query:    1 QPTRSFGDAYLKYPEFNGKEGTH--RSAGRFLPPPYTPPYITAEPEV 135
            QPTR+FGD  LK  EFNG    +  RSAGR +PPPYTPPYIT++PEV
Sbjct:  256 QPTRAFGDFTLKLSEFNGPPYVNGDRSAGRHIPPPYTPPYITSKPEV 302          
BLAST of mRNA_Ecto-sp13_S_contig67555.17674.1 vs. uniprot
Match: A0A7S3MDA6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MDA6_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.090e-10
Identity = 26/45 (57.78%), Postives = 35/45 (77.78%), Query Frame = 1
Query:    1 QPTRSFGDAYLKYPEFNGKEGTHRSAGRFLPPPYTPPYITAEPEV 135
            Q TRS GD YLK  EFNG +  HRS+GR++P PYTPPY++ +P++
Sbjct:  228 QLTRSIGDEYLKSQEFNGSKDKHRSSGRYIPHPYTPPYVSHQPDL 272          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig67555.17674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJS4_ECTSI2.900e-2397.78PPM-type phosphatase domain-containing protein n=2... [more]
A0A835YJE2_9STRA3.940e-1780.43Phosphatase 2C-like domain-containing protein n=1 ... [more]
A0A7S2V900_9STRA9.590e-1570.59Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7TS31_9STRA4.470e-1472.34Protein phosphatase n=1 Tax=Nannochloropsis gadita... [more]
A0A4D9D382_9STRA6.650e-1472.34PPM-type phosphatase domain-containing protein n=2... [more]
A0A2R5GGL4_9STRA2.510e-1164.58Protein phosphatase 2C 29 n=1 Tax=Hondaea fermenta... [more]
A0A835YMD2_9STRA2.510e-1169.57Phosphatase 2C-like domain-containing protein n=1 ... [more]
A0A482STI6_9ARCH2.560e-1060.00Protein serine/threonine phosphatase 2C family pro... [more]
A0A024GCJ0_9STRA3.000e-1065.96PPM-type phosphatase domain-containing protein n=2... [more]
A0A7S3MDA6_9STRA4.090e-1057.78Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig67555contigEcto-sp13_S_contig67555:96..239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score99.0
Seed ortholog evalue6.5e-19
Seed eggNOG ortholog2880.D7FJS4
Model size144
KEGG koko:K01102
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0700@2759
EC3.1.3.43
Cds size144
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463928.713711-CDS-Ecto-sp13_S_contig67555:95..2391681463928.713711-CDS-Ecto-sp13_S_contig67555:95..239Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig67555 96..239 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig67555.17674.1prot_Ecto-sp13_S_contig67555.17674.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig67555 96..239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig67555.17674.1

>prot_Ecto-sp13_S_contig67555.17674.1 ID=prot_Ecto-sp13_S_contig67555.17674.1|Name=mRNA_Ecto-sp13_S_contig67555.17674.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
QPTRSFGDAYLKYPEFNGKEGTHRSAGRFLPPPYTPPYITAEPEVRPR
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mRNA from alignment at Ecto-sp13_S_contig67555:96..239+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig67555.17674.1 ID=mRNA_Ecto-sp13_S_contig67555.17674.1|Name=mRNA_Ecto-sp13_S_contig67555.17674.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67555:96..239+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCCCACCCGTTCCTTCGGGGACGCGTACCTTAAGTACCCGGAGTTCAA TGGGAAGGAGGGCACGCACAGATCGGCGGGGAGATTCCTACCGCCTCCTT ACACCCCACCCTACATCACGGCTGAGCCGGAGGTGAGGCCGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig67555:96..239+

>mRNA_Ecto-sp13_S_contig67555.17674.1 ID=mRNA_Ecto-sp13_S_contig67555.17674.1|Name=mRNA_Ecto-sp13_S_contig67555.17674.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67555:96..239+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCCCACCCGTTCCTTCGGGGACGCGTACCTTAAGTACCCGGAGTTCAA
TGGGAAGGAGGGCACGCACAGATCGGCGGGGAGATTCCTACCGCCTCCTT
ACACCCCACCCTACATCACGGCTGAGCCGGAGGTGAGGCCGAGG
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