mRNA_Ecto-sp13_S_contig6748.17664.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6748.17664.1
Unique NamemRNA_Ecto-sp13_S_contig6748.17664.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6748.17664.1 vs. uniprot
Match: D7FQT7_ECTSI (RNA-binding protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQT7_ECTSI)

HSP 1 Score: 479 bits (1232), Expect = 1.940e-166
Identity = 294/297 (98.99%), Postives = 295/297 (99.33%), Query Frame = 1
Query:    1 MVTDEDPANGATAEAEAETNGTXXXXXXXXXXXXXXXXXXXXXXKAKELSHEEQQKADVEGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQESTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRAAADRNSASARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDIVRKVMSGGTHELKGKSVEVKTAAPRDGPRQFNGGGGFXXXXXXXXXXXXXXXXXXXXXXXXXXQGWSQQ 891
            MVTDEDPANGATAEAEAETNGTXXXXXXXXXXXXXXXXXXXXXXKAKELSHEEQQKADVEGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQESTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRAAADRNSA+ARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDIVRKVMSGGTHELKGKSVEVKTAAPRDGPRQFNGGGGFXXXXXXXXXXXXXX XXXXXXXXXX QGWSQQ
Sbjct:    1 MVTDEDPANGATAEAEAETNGTXXXXXXXXXXXXXXXXXXXXXXKAKELSHEEQQKADVEGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQESTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRAAADRNSANARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDIVRKVMSGGTHELKGKSVEVKTAAPRDGPRQFNGGGGFXXXXXXXXXXXXXXYXXXXXXXXXXQQGWSQQ 297          
BLAST of mRNA_Ecto-sp13_S_contig6748.17664.1 vs. uniprot
Match: A0A7S3UWI8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWI8_HETAK)

HSP 1 Score: 191 bits (485), Expect = 8.250e-57
Identity = 99/207 (47.83%), Postives = 136/207 (65.70%), Query Frame = 1
Query:  145 LSHEEQQKA-DVEGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQESTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRAAADRNSASARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDIVRKVMSGGTHELKGKSVEVKTAAPRD 762
            +S E  +++ DV GK+FLGG++WQTTED LK +F K+G L D  +M++K TG+PRGFGFVQF+++++ D  L EEH IDGR +D+K+A+ R+ AP  RA +++                         KIFVGGL+Q V + DF+ YF KFG + DAVVM D+ T RSRGFGF+TY   + V +VM+  TH L+ K VE+K A PRD
Sbjct:    1 MSDERPERSNDVTGKLFLGGVSWQTTEDGLKFYFEKFGKLKDCAVMKDKFTGQPRGFGFVQFEDASAVDKVLAEEHTIDGRVLDIKKAISREHAP--RAISEKID---------------------VKKIFVGGLEQAVTEGDFKDYFGKFGDITDAVVMMDRNTNRSRGFGFVTYADAESVNRVMNE-THTLRDKVVEIKRAEPRD 183          
BLAST of mRNA_Ecto-sp13_S_contig6748.17664.1 vs. uniprot
Match: A0A7S2XZ50_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ50_9STRA)

HSP 1 Score: 193 bits (491), Expect = 2.960e-56
Identity = 99/194 (51.03%), Postives = 130/194 (67.01%), Query Frame = 1
Query:  178 EGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQESTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRAAADRNSASARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDIVRKVMSGGTHELKGKSVEVKTAAPR 759
            EGK+F+GG++WQTTED L+ +F K+G L DV +M++K TG+PRGFGFV F++++  +  L + H +DGR +D KRAV R+ +  PR                GG +GG      + KIFVGGL   V + DFRGYF KFG + DAVVM D+ TGRSRGFGF+TYD    VR V++G +HE+KGK VEVK A PR
Sbjct:    4 EGKVFIGGVSWQTTEDGLRYYFEKFGELTDVAVMKDKFTGQPRGFGFVTFKDTSVVEKVLGQTHTLDGRQVDCKRAVRREESSAPR----------------GGGYGGE-----SKKIFVGGLAPSVEEDDFRGYFDKFGTITDAVVMMDRNTGRSRGFGFVTYDDESSVRDVLAG-SHEIKGKFVEVKRAEPR 175          
BLAST of mRNA_Ecto-sp13_S_contig6748.17664.1 vs. uniprot
Match: A0A835ZAL5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAL5_9STRA)

HSP 1 Score: 192 bits (489), Expect = 6.760e-56
Identity = 107/219 (48.86%), Postives = 140/219 (63.93%), Query Frame = 1
Query:  148 SHEEQQKADVEGKIFLG---GLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQESTSADAALKE-EHVIDGRTIDVKRAVPRDRAPLPRAAADRNSASARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDIVRKVMSGGTHELKGKSVEVKTAAPRDGPRQFNGGGG 792
            S E  + +DV GK+F+G   G++WQT+E+ L  HF K+GAL DV LM++K TG+PRGFGF++F++ +  DA L + EH IDGR +DVKRAVP+  AP P          AR   Q              NK+FVGGL   V  A+FR YF  FG V DAVVM+D++T RSRGFGF+T+    +V+ V+ G THEL GK VEVKTA P++  R  + GGG
Sbjct:    4 SDEIDKDSDVTGKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAPGP----------ARATRQAD-----------FNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMG-THELNGKMVEVKTAEPKESRRNASPGGG 200          
BLAST of mRNA_Ecto-sp13_S_contig6748.17664.1 vs. uniprot
Match: D7FW71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW71_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 8.930e-56
Identity = 103/209 (49.28%), Postives = 138/209 (66.03%), Query Frame = 1
Query:  136 AKELSHEEQQKADVEGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQESTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRAAADRNSASARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDIVRKVMSGGTHELKGKSVEVKTAAPRD 762
            A  ++H++    DVEGK+F+GG++WQTTE+ L+ HFGK+G L D+ LM++K TG PRGFGF++F++ T  D  L +EH IDG+ +DVKRAVP+  AP P   + R+S  A                  TNKIFVGGL   V  A+FR YF  FG V DAVVM+D++T RSRGFGF+T+    +V  +M G THE+ GK VEVK A P++
Sbjct:  135 AGSVAHDKDN--DVEGKLFIGGISWQTTEEGLRHHFGKYGTLADIALMKDKYTGHPRGFGFIKFEDITVLDEILSQEHKIDGKVVDVKRAVPKSEAPGP---SSRSSRPAE-----------------TNKIFVGGLAPTVMMAEFRKYFETFGGVVDAVVMFDRQTQRSRGFGFVTFQEDAVVHDIMMG-THEINGKMVEVKRAEPKE 320          
BLAST of mRNA_Ecto-sp13_S_contig6748.17664.1 vs. uniprot
Match: A0A8K1C8M2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C8M2_PYTOL)

HSP 1 Score: 194 bits (494), Expect = 4.660e-55
Identity = 102/206 (49.51%), Postives = 137/206 (66.50%), Query Frame = 1
Query:  181 GKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQESTSADAALKEEHVIDGRTIDVKRAVPRDR-APLPRAAADRNSASARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDIVRKVMSGGTHELKGKSVEVKTAAPRDGPRQFNGGGGF 795
            GK+F+GG++W+TTED L+ HFGK+GAL D  LM++K TG+PRGFGFV F ++T+ D  L+E HVIDGRT++VKRA+PRD+ AP P   +D       G                + KIFVGGL   V + DFR YF +FGK+ DAVVM D+ T RSRGFGF+T+D    V +V+S  +HE+ GK+VE+K A P++      G GG+
Sbjct:   99 GKLFIGGVSWETTEDSLRGHFGKYGALTDAALMKDKFTGQPRGFGFVTFADATAIDRVLEESHVIDGRTVEVKRAIPRDKTAPGP---SDGRFGGGYGRXXXXXXXXXXXGYTESKKIFVGGLAPSVTEQDFRQYFEEFGKITDAVVMIDRDTQRSRGFGFVTFDEEGAVAEVISK-SHEIHGKTVEIKRAEPKE----VRGSGGY 296          
BLAST of mRNA_Ecto-sp13_S_contig6748.17664.1 vs. uniprot
Match: A0A3M6VT05_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VT05_9STRA)

HSP 1 Score: 192 bits (489), Expect = 2.870e-54
Identity = 102/205 (49.76%), Postives = 138/205 (67.32%), Query Frame = 1
Query:  181 GKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQESTSADAALKEEHVIDGRTIDVKRAVPRDR-APLPRAAADRNSASARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDIVRKVMSGGTHELKGKSVEVKTAAPRDGPRQFNGGGG 792
            GK+F+GG++W+TTED L+ HFGK+G L D  LM++K TG+PRGFGFV F ++++ D  L+E H +DGR+++VKRA+PR+R AP         S+  RGG + G   GG  +     KIFVGGL   V + DFR YF +FGK  DAVVM D+ T RSRGFGFIT++    V +V+S  +HE+ GK VE+K A P++      GGGG
Sbjct:  115 GKLFIGGVSWETTEDTLRQHFGKYGPLTDAALMKDKYTGQPRGFGFVTFADASAIDRVLEETHTLDGRSVEVKRAIPRERTAP--------GSSEIRGGGRGGFSSGGFTEQ---KKIFVGGLAPTVTEQDFRHYFEEFGKTTDAVVMIDRDTQRSRGFGFITFEEESSVAEVISK-SHEIHGKIVEIKRAEPKES----RGGGG 303          
BLAST of mRNA_Ecto-sp13_S_contig6748.17664.1 vs. uniprot
Match: A0A5A7PXB6_STRAF (RNA-binding (RRM/RBD/RNP motifs) family protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7PXB6_STRAF)

HSP 1 Score: 189 bits (481), Expect = 3.330e-54
Identity = 98/207 (47.34%), Postives = 135/207 (65.22%), Query Frame = 1
Query:  178 EGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQESTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRAAADRNSASARGGSQ-VGGRHGGMN-DAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDIVRKVMSGGTHELKGKSVEVKTAAPRDGPRQFNGGGG 792
            + K+F+GG++W+TTED+L  HF K+G ++  ++ +++++G+PRGF FV F ES++ D AL+E H I GRT++VKRA+PR           +   ++RG S+   G + G N D   T KIFVGGL   + + +FR YFAKFG++ D VVM+D  T R RGFGFITYDS D V +VM    HEL GK VEVK A P+DG      G G
Sbjct:    6 QNKLFVGGISWETTEDILNEHFNKYGVVSGSVIAKDRVSGQPRGFAFVTFSESSAVDRALQESHQILGRTVEVKRAIPRSEQQ------SQQQHNSRGLSRNFSGTNKGRNTDEFRTKKIFVGGLSTNLTEQEFRSYFAKFGRITDVVVMHDNMTHRPRGFGFITYDSEDSVEEVMQKNFHELAGKLVEVKRAVPKDGSNSSGNGYG 206          
BLAST of mRNA_Ecto-sp13_S_contig6748.17664.1 vs. uniprot
Match: D8RTI0_SELML (Uncharacterized protein (Fragment) n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RTI0_SELML)

HSP 1 Score: 183 bits (465), Expect = 3.520e-54
Identity = 93/195 (47.69%), Postives = 130/195 (66.67%), Query Frame = 1
Query:  178 EGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQESTSADAALKEEHVIDGRTIDVKRAVPRD-RAPLPRAAADRNSASARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDIVRKVMSGGTHELKGKSVEVKTAAPR 759
            +GK+F+GG++W+TTE+ L+ +F ++G + + ++M+++ TG  RGFGFV F + ++AD A+ E+H I+GR ++ K+AVPRD +  +PR      S+ + GG   GG  G       T KIFVGGL   V + +FRGYF +FG + DAVVMYD  T R RGFGFIT+DS D V  V+    HELK K VEVK A PR
Sbjct:    5 QGKLFIGGISWETTEEQLRDYFQRYGEIAETMIMKDRNTGRARGFGFVSFADPSAADMAVAEKHTINGRLVEAKKAVPRDEQQTIPR------SSISSGGQSPGGGQG------RTKKIFVGGLASTVTEEEFRGYFEQFGTISDAVVMYDHTTQRPRGFGFITFDSEDSVEAVLMKSFHELKDKMVEVKRAVPR 187          
BLAST of mRNA_Ecto-sp13_S_contig6748.17664.1 vs. uniprot
Match: A0A5A7RED1_STRAF (RNA-binding (RRM/RBD/RNP motifs) family protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7RED1_STRAF)

HSP 1 Score: 191 bits (485), Expect = 6.990e-54
Identity = 96/194 (49.48%), Postives = 129/194 (66.49%), Query Frame = 1
Query:  181 GKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQESTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRAAADRNSASARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDIVRKVMSGGTHELKGKSVEVKTAAPRD 762
            GK+F+GG++W T E+ LK +FG +G + + ++MR++ TG  RGFGF+ F + T A+  +KE+HVIDGRT++ K+AVPRD   L     +RNS+S+  GS + GR         T KIFVGGL   V + DF+ YF++FG + D VVMYD  T R RGFGFITYDS D V +V+    HEL  K VEVK A PR+
Sbjct:   13 GKLFVGGISWDTNEERLKDYFGTYGDVMEAVIMRDRTTGRARGFGFIVFADPTVAERVIKEKHVIDGRTVEAKKAVPRDDHNLT----NRNSSSSTQGSPIPGR---------TKKIFVGGLASTVTETDFKNYFSQFGSITDVVVMYDHNTQRPRGFGFITYDSEDAVDRVLHKTFHELNAKMVEVKRAVPRE 193          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6748.17664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQT7_ECTSI1.940e-16698.99RNA-binding protein, putative n=2 Tax=Ectocarpus T... [more]
A0A7S3UWI8_HETAK8.250e-5747.83Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2XZ50_9STRA2.960e-5651.03Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A835ZAL5_9STRA6.760e-5648.86Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D7FW71_ECTSI8.930e-5649.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8K1C8M2_PYTOL4.660e-5549.51Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3M6VT05_9STRA2.870e-5449.76Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A5A7PXB6_STRAF3.330e-5447.34RNA-binding (RRM/RBD/RNP motifs) family protein n=... [more]
D8RTI0_SELML3.520e-5447.69Uncharacterized protein (Fragment) n=3 Tax=Selagin... [more]
A0A5A7RED1_STRAF6.990e-5449.48RNA-binding (RRM/RBD/RNP motifs) family protein n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6748contigEcto-sp13_S_contig6748:4719..7997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score483.0
Seed ortholog evalue9.8e-134
Seed eggNOG ortholog2880.D7FQT7
Preferred nameHNRNPA1
Model size891
KEGG rclassRC00302
KEGG koko:K12235,ko:K12741,ko:K14411
KEGG ReactionR00589
KEGG Pathwayko00260,ko01100,ko03015,ko03040,map00260,map01100,map03015,map03040
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005844,GO:0005849,GO:0006139,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0009791,GO:0009987,GO:0010228,GO:0010467,GO:0016070,GO:0016071,GO:0022414,GO:0030154,GO:0031123,GO:0031124,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034046,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0047484,GO:0048468,GO:0048583,GO:0048608,GO:0048731,GO:0048856,GO:0048863,GO:0048864,GO:0048869,GO:0050789,GO:0061458,GO:0065007,GO:0070013,GO:0070717,GO:0071704,GO:0080134,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:1901000,GO:1901360,GO:1901363,GO:1990904,GO:2000070
Exons8
EggNOG free text desc.poly(U) RNA binding
EggNOG OGsKOG4205@1,KOG4205@2759
Ec32 ortholog descriptionRNA-binding protein
Ec32 orthologEc-16_000660.1
EC5.1.1.18
Cds size891
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6748.17664.1prot_Ecto-sp13_S_contig6748.17664.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6748 4719..7997 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463927.7028255-CDS-Ecto-sp13_S_contig6748:4718..47541681463927.7028255-CDS-Ecto-sp13_S_contig6748:4718..4754Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6748 4719..4754 +
1681463927.7221608-CDS-Ecto-sp13_S_contig6748:4991..51211681463927.7221608-CDS-Ecto-sp13_S_contig6748:4991..5121Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6748 4992..5121 +
1681463927.7325654-CDS-Ecto-sp13_S_contig6748:5405..55791681463927.7325654-CDS-Ecto-sp13_S_contig6748:5405..5579Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6748 5406..5579 +
1681463927.743648-CDS-Ecto-sp13_S_contig6748:6483..65771681463927.743648-CDS-Ecto-sp13_S_contig6748:6483..6577Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6748 6484..6577 +
1681463927.761422-CDS-Ecto-sp13_S_contig6748:6843..69371681463927.761422-CDS-Ecto-sp13_S_contig6748:6843..6937Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6748 6844..6937 +
1681463927.7733192-CDS-Ecto-sp13_S_contig6748:7187..72491681463927.7733192-CDS-Ecto-sp13_S_contig6748:7187..7249Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6748 7188..7249 +
1681463927.7849944-CDS-Ecto-sp13_S_contig6748:7533..76361681463927.7849944-CDS-Ecto-sp13_S_contig6748:7533..7636Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6748 7534..7636 +
1681463927.7950077-CDS-Ecto-sp13_S_contig6748:7799..79971681463927.7950077-CDS-Ecto-sp13_S_contig6748:7799..7997Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6748 7800..7997 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6748.17664.1

>prot_Ecto-sp13_S_contig6748.17664.1 ID=prot_Ecto-sp13_S_contig6748.17664.1|Name=mRNA_Ecto-sp13_S_contig6748.17664.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=297bp
MVTDEDPANGATAEAEAETNGTAETNDTADVTAAADGAPAVEGEKAKELS
HEEQQKADVEGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGE
PRGFGFVQFQESTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRAAADR
NSASARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGK
VEDAVVMYDKKTGRSRGFGFITYDSPDIVRKVMSGGTHELKGKSVEVKTA
APRDGPRQFNGGGGFNGGGYGGGGGYGGGYGGGGGGGYGGQQGWSQQ
back to top

mRNA from alignment at Ecto-sp13_S_contig6748:4719..7997+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6748.17664.1 ID=mRNA_Ecto-sp13_S_contig6748.17664.1|Name=mRNA_Ecto-sp13_S_contig6748.17664.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6748:4719..7997+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGACTGACGAAGACCCCGCCAACGGTGCAACGGTGAGATGATTCAA TAGACGGTATCACCTAAACCGGGGAGGCAGATTATGGGTAGTCCAAGAGG GGTTTTGGGGCGAGAACCCTTCGACAACCGCCGTGATTTTGCTCGCTGTT CGCTCTTTCGGCACTTGCATTACTGCGGTGTCCACGAGTGTATCCAATTA GCGTTGTGAGCAGCGAAAATGAAGTCTCTCAGCTGCTGTCGCTGTTTGTG GGGTTTCCTCAAATTCTGGACAGGCTGAAGCTGAGGCGGAAACAAACGGC ACGGCCGAGACCAACGACACGGCCGATGTAACGGCGGCTGCGGACGGTGC GCCTGCCGTTGAAGGTGAAAAGGCCAAGGAGTTGTCGCACGAAGAACAAC AGAGTGAGTGCTGCCGACTCCACGATACCGCACGCAAGCCAAAACCACAC CACTGCTCGTCCTTCAATGCTACAGTAGTCACAAGTTGGGAGCTTTTCCA GACGCACGAAGAATTCTGCTGGTCTGGCGTTTACAGCGTTCAATCTCTTG AGGTGCGGAAGGAACGATACCCATTTTCGTCGCAACCCCCACATGGTCCC CGAGGAATGCGATCACGTTGGTTGTGGGTCAGTTCGCTCCCGGTTTGTTG ATGTTGACGGGTGAAATGACCGTGTCTTGGCTTTCAGAGGCTGATGTGGA GGGGAAGATCTTCCTCGGCGGCCTGACTTGGCAAACGACTGAAGACATGC TCAAGACGCACTTCGGGAAGTGGGGCGCTCTGAATGACGTCATCCTGATG CGCAACAAAATCACCGGAGAACCTCGCGGCTTCGGCTTCGTGCAGTTCCA AGAGTCCACATGTGGGTCTTGCCTCCTCCATTTATGACACATAAATCGAG AGCATCGCTTTTGGTCGACGCTGTGGTGTTGTACCGTCGTGTCGAGAGGA AGGCGATTTCGCTTCTTTGTGGTTGATCTTGAGATATGAACTTGCGTCGG CTTCCATACGCACGCCCCTTCTCTGGCAGTGCTTTTGCTGTCCCTTGTTA ATGATTTAACTTATTGCCACGTTTGTCCTCGACATGGAGTAATTTGAGAC CGTCTGAGTGACACGGATAGCGCTTGGAGGTTTCCGTTGCACAGAGTACA GGACAGCAAGCAGATTGGAGTACGTCAAGGTACATCGCAGCTTCGGGTTC GACGTACATCAGTTCAGCGGTACTTGCAGCACTATCGTACGTACTGTACT GTACAGTAAGTGAGCACAGAGGATGGAGAAGGACGGCTGCAGCACGCAAG GCAGAGCAGACGTACTTTTTAGGACGCAAGAAGTGGAGCAAGTCCGCTCG GAGACTCCCTCTGGATTGTGGTCTCGTGTACAGTACGTATTCCCGTACAG CAGTACAACAGCACAACGACGTCAGCAACAGCGTCCTCCAGGAATGGCTT CATTCGTCGCAGAGGAAGAAGGCACTGGCGGTGCCAGGCAGTACCTGGCG GACATTTTGTTCGTCTCGATTCTTGCTTCTGCCATGTGGCTGTTTTCGAC TACTGCGCTGTGCATGTTGTCGTTCAGCATTTATGTCGCTGTGCGTTTGT GGTCTGTCAGACCTTAGACTGTTGCCCACTGCTGGATGTATGTACGCATT GCGGCAAAGAAAGAAGCAGGCCGCGGCAAATGCAGCTGTTCAACTTGTAT TATTTTGTGTGTTGCTCGTTGCTCTTCTGTCCCCTGTCCCGTTGTCTCCA AATTGTGCTTGTTAGCTGCGGATGCCGCCCTCAAGGAAGAACACGTGATA GATGGCAGGACCATAGACGTCAAGAGGGCTGTCCCTAGGGACAGGGCACC GCTGCCTAGGTTGGTTAGAGTTATGGGAGTCGTTTTTTCGTGTCCGTGTT TGGGAGGGCGGGTTGGGGATTTCGGGTTCAGGCCTGGTGTATGTAGAAAG TATTGAGCGTTTAGTGTAGGCGCCTGCGTTCGCTCCTCGGTCAATAATAA CTTTCCCTTTTTCGCCCTTGTCTACCCGTCCCTGCGCATGTTGGTGGACG TGTTGCCTCTTGTCTGGAATATAATGACATGGTGTGGTGCTGAACGTGTG TCGGTGGCTCCTTGCGATGGCTTAGGGCCGCGGCCGACCGCAACAGTGCC AGCGCCAGAGGAGGGTCTCAGGTGGGCGGCCGCCACGGCGGCATGAATGA TGCCCCTCTGACTAACAAGGTGAGAGTGACACCGTCCCCATCCCCCCCGC ACGCTGCGTTGTTGCGGTGCGGTAGTAAAAAATTGGATTGGAATTTTGGC TGTTTCGGCGTACTTGTGTATGTTTAGAGTTGTTCCCTGGGAGCTGCTTC AAGATGCACGGTTTCACTTTTTTCATCTGGTGCTGTTCGTCCGTCATCCC TCCATCTTGTTCATCATTCTTTCTCTTACGTTTGTCTATTTTCTTTGCGC GTGCGTCTCGTTTATCCAGATCTTCGTGGGTGGTCTTGATCAGGAGGTGA ACGACGCCGACTTCCGGGGCTACTTCGCCAAGTAAGGGCAGTAACAGTAG TTGACGTCGTGCAATCTGTGTTTTCATTGTCACGGTCAGCGAATTTGTAT GCTCGTTATAGTCACACCAAATACGTCAGAGTATCAAGGATCACGTGACT TGTGCTCGATCTGAAAAGCATTCTTGCACGCGGCTGGCGTGTTTAGATGC ATTTCAAGGTGTGTTGCAACTGCGACACTCACGTATGCATCCCGTCTGTG AACATTTTAAGAATGGATGACATTACAACATGCTGTAAACATGCTTGCGT TGGTTTCATGAGCAGGTTCGGCAAAGTAGAAGACGCGGTTGTGATGTACG ACAAGAAGACTGGCAGGTCGAGGGGATTCGGATTCATCACCTACGACAGC CCTGACATCGTGCGCAAGGTATGGAAGACGTGATTTCATTTCCCAAAAAG AGAGTTTCCAAAGCGTGCATTTGGTTGTTTGGATGGGTGAGAACAGGTAG TTCACAAGGCTCAATGGACCGCGCACGTCAGGTTGCGAGATACCATTCTG CTGCGACGATGACCTCGCATACGAACTTCAGGTTATGAGCGGTGGTACGC ACGAGCTGAAGGGCAAGTCGGTGGAAGTCAAGACAGCAGCCCCCCGCGAC GGACCCCGTCAATTCAACGGTGGCGGCGGCTTCAACGGTGGCGGCTACGG AGGCGGTGGAGGCTACGGTGGAGGCTACGGCGGCGGTGGTGGTGGAGGCT ACGGCGGACAACAGGGCTGGTCTCAGCAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6748:4719..7997+

>mRNA_Ecto-sp13_S_contig6748.17664.1 ID=mRNA_Ecto-sp13_S_contig6748.17664.1|Name=mRNA_Ecto-sp13_S_contig6748.17664.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=891bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6748:4719..7997+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGACTGACGAAGACCCCGCCAACGGTGCAACGGCTGAAGCTGAGGC
GGAAACAAACGGCACGGCCGAGACCAACGACACGGCCGATGTAACGGCGG
CTGCGGACGGTGCGCCTGCCGTTGAAGGTGAAAAGGCCAAGGAGTTGTCG
CACGAAGAACAACAGAAGGCTGATGTGGAGGGGAAGATCTTCCTCGGCGG
CCTGACTTGGCAAACGACTGAAGACATGCTCAAGACGCACTTCGGGAAGT
GGGGCGCTCTGAATGACGTCATCCTGATGCGCAACAAAATCACCGGAGAA
CCTCGCGGCTTCGGCTTCGTGCAGTTCCAAGAGTCCACATCTGCGGATGC
CGCCCTCAAGGAAGAACACGTGATAGATGGCAGGACCATAGACGTCAAGA
GGGCTGTCCCTAGGGACAGGGCACCGCTGCCTAGGGCCGCGGCCGACCGC
AACAGTGCCAGCGCCAGAGGAGGGTCTCAGGTGGGCGGCCGCCACGGCGG
CATGAATGATGCCCCTCTGACTAACAAGATCTTCGTGGGTGGTCTTGATC
AGGAGGTGAACGACGCCGACTTCCGGGGCTACTTCGCCAAGTTCGGCAAA
GTAGAAGACGCGGTTGTGATGTACGACAAGAAGACTGGCAGGTCGAGGGG
ATTCGGATTCATCACCTACGACAGCCCTGACATCGTGCGCAAGGTTATGA
GCGGTGGTACGCACGAGCTGAAGGGCAAGTCGGTGGAAGTCAAGACAGCA
GCCCCCCGCGACGGACCCCGTCAATTCAACGGTGGCGGCGGCTTCAACGG
TGGCGGCTACGGAGGCGGTGGAGGCTACGGTGGAGGCTACGGCGGCGGTG
GTGGTGGAGGCTACGGCGGACAACAGGGCTGGTCTCAGCAG
back to top