mRNA_Ecto-sp13_S_contig6748.17664.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6748.17664.1 vs. uniprot
Match: D7FQT7_ECTSI (RNA-binding protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQT7_ECTSI) HSP 1 Score: 479 bits (1232), Expect = 1.940e-166 Identity = 294/297 (98.99%), Postives = 295/297 (99.33%), Query Frame = 1
Query: 1 MVTDEDPANGATAEAEAETNGTXXXXXXXXXXXXXXXXXXXXXXKAKELSHEEQQKADVEGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQESTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRAAADRNSASARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDIVRKVMSGGTHELKGKSVEVKTAAPRDGPRQFNGGGGFXXXXXXXXXXXXXXXXXXXXXXXXXXQGWSQQ 891
MVTDEDPANGATAEAEAETNGTXXXXXXXXXXXXXXXXXXXXXXKAKELSHEEQQKADVEGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQESTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRAAADRNSA+ARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDIVRKVMSGGTHELKGKSVEVKTAAPRDGPRQFNGGGGFXXXXXXXXXXXXXX XXXXXXXXXX QGWSQQ
Sbjct: 1 MVTDEDPANGATAEAEAETNGTXXXXXXXXXXXXXXXXXXXXXXKAKELSHEEQQKADVEGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQESTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRAAADRNSANARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDIVRKVMSGGTHELKGKSVEVKTAAPRDGPRQFNGGGGFXXXXXXXXXXXXXXYXXXXXXXXXXQQGWSQQ 297
BLAST of mRNA_Ecto-sp13_S_contig6748.17664.1 vs. uniprot
Match: A0A7S3UWI8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWI8_HETAK) HSP 1 Score: 191 bits (485), Expect = 8.250e-57 Identity = 99/207 (47.83%), Postives = 136/207 (65.70%), Query Frame = 1
Query: 145 LSHEEQQKA-DVEGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQESTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRAAADRNSASARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDIVRKVMSGGTHELKGKSVEVKTAAPRD 762
+S E +++ DV GK+FLGG++WQTTED LK +F K+G L D +M++K TG+PRGFGFVQF+++++ D L EEH IDGR +D+K+A+ R+ AP RA +++ KIFVGGL+Q V + DF+ YF KFG + DAVVM D+ T RSRGFGF+TY + V +VM+ TH L+ K VE+K A PRD
Sbjct: 1 MSDERPERSNDVTGKLFLGGVSWQTTEDGLKFYFEKFGKLKDCAVMKDKFTGQPRGFGFVQFEDASAVDKVLAEEHTIDGRVLDIKKAISREHAP--RAISEKID---------------------VKKIFVGGLEQAVTEGDFKDYFGKFGDITDAVVMMDRNTNRSRGFGFVTYADAESVNRVMNE-THTLRDKVVEIKRAEPRD 183
BLAST of mRNA_Ecto-sp13_S_contig6748.17664.1 vs. uniprot
Match: A0A7S2XZ50_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ50_9STRA) HSP 1 Score: 193 bits (491), Expect = 2.960e-56 Identity = 99/194 (51.03%), Postives = 130/194 (67.01%), Query Frame = 1
Query: 178 EGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQESTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRAAADRNSASARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDIVRKVMSGGTHELKGKSVEVKTAAPR 759
EGK+F+GG++WQTTED L+ +F K+G L DV +M++K TG+PRGFGFV F++++ + L + H +DGR +D KRAV R+ + PR GG +GG + KIFVGGL V + DFRGYF KFG + DAVVM D+ TGRSRGFGF+TYD VR V++G +HE+KGK VEVK A PR
Sbjct: 4 EGKVFIGGVSWQTTEDGLRYYFEKFGELTDVAVMKDKFTGQPRGFGFVTFKDTSVVEKVLGQTHTLDGRQVDCKRAVRREESSAPR----------------GGGYGGE-----SKKIFVGGLAPSVEEDDFRGYFDKFGTITDAVVMMDRNTGRSRGFGFVTYDDESSVRDVLAG-SHEIKGKFVEVKRAEPR 175
BLAST of mRNA_Ecto-sp13_S_contig6748.17664.1 vs. uniprot
Match: A0A835ZAL5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAL5_9STRA) HSP 1 Score: 192 bits (489), Expect = 6.760e-56 Identity = 107/219 (48.86%), Postives = 140/219 (63.93%), Query Frame = 1
Query: 148 SHEEQQKADVEGKIFLG---GLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQESTSADAALKE-EHVIDGRTIDVKRAVPRDRAPLPRAAADRNSASARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDIVRKVMSGGTHELKGKSVEVKTAAPRDGPRQFNGGGG 792
S E + +DV GK+F+G G++WQT+E+ L HF K+GAL DV LM++K TG+PRGFGF++F++ + DA L + EH IDGR +DVKRAVP+ AP P AR Q NK+FVGGL V A+FR YF FG V DAVVM+D++T RSRGFGF+T+ +V+ V+ G THEL GK VEVKTA P++ R + GGG
Sbjct: 4 SDEIDKDSDVTGKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAPGP----------ARATRQAD-----------FNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMG-THELNGKMVEVKTAEPKESRRNASPGGG 200
BLAST of mRNA_Ecto-sp13_S_contig6748.17664.1 vs. uniprot
Match: D7FW71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW71_ECTSI) HSP 1 Score: 197 bits (500), Expect = 8.930e-56 Identity = 103/209 (49.28%), Postives = 138/209 (66.03%), Query Frame = 1
Query: 136 AKELSHEEQQKADVEGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQESTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRAAADRNSASARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDIVRKVMSGGTHELKGKSVEVKTAAPRD 762
A ++H++ DVEGK+F+GG++WQTTE+ L+ HFGK+G L D+ LM++K TG PRGFGF++F++ T D L +EH IDG+ +DVKRAVP+ AP P + R+S A TNKIFVGGL V A+FR YF FG V DAVVM+D++T RSRGFGF+T+ +V +M G THE+ GK VEVK A P++
Sbjct: 135 AGSVAHDKDN--DVEGKLFIGGISWQTTEEGLRHHFGKYGTLADIALMKDKYTGHPRGFGFIKFEDITVLDEILSQEHKIDGKVVDVKRAVPKSEAPGP---SSRSSRPAE-----------------TNKIFVGGLAPTVMMAEFRKYFETFGGVVDAVVMFDRQTQRSRGFGFVTFQEDAVVHDIMMG-THEINGKMVEVKRAEPKE 320
BLAST of mRNA_Ecto-sp13_S_contig6748.17664.1 vs. uniprot
Match: A0A8K1C8M2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C8M2_PYTOL) HSP 1 Score: 194 bits (494), Expect = 4.660e-55 Identity = 102/206 (49.51%), Postives = 137/206 (66.50%), Query Frame = 1
Query: 181 GKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQESTSADAALKEEHVIDGRTIDVKRAVPRDR-APLPRAAADRNSASARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDIVRKVMSGGTHELKGKSVEVKTAAPRDGPRQFNGGGGF 795
GK+F+GG++W+TTED L+ HFGK+GAL D LM++K TG+PRGFGFV F ++T+ D L+E HVIDGRT++VKRA+PRD+ AP P +D G + KIFVGGL V + DFR YF +FGK+ DAVVM D+ T RSRGFGF+T+D V +V+S +HE+ GK+VE+K A P++ G GG+
Sbjct: 99 GKLFIGGVSWETTEDSLRGHFGKYGALTDAALMKDKFTGQPRGFGFVTFADATAIDRVLEESHVIDGRTVEVKRAIPRDKTAPGP---SDGRFGGGYGRXXXXXXXXXXXGYTESKKIFVGGLAPSVTEQDFRQYFEEFGKITDAVVMIDRDTQRSRGFGFVTFDEEGAVAEVISK-SHEIHGKTVEIKRAEPKE----VRGSGGY 296
BLAST of mRNA_Ecto-sp13_S_contig6748.17664.1 vs. uniprot
Match: A0A3M6VT05_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VT05_9STRA) HSP 1 Score: 192 bits (489), Expect = 2.870e-54 Identity = 102/205 (49.76%), Postives = 138/205 (67.32%), Query Frame = 1
Query: 181 GKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQESTSADAALKEEHVIDGRTIDVKRAVPRDR-APLPRAAADRNSASARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDIVRKVMSGGTHELKGKSVEVKTAAPRDGPRQFNGGGG 792
GK+F+GG++W+TTED L+ HFGK+G L D LM++K TG+PRGFGFV F ++++ D L+E H +DGR+++VKRA+PR+R AP S+ RGG + G GG + KIFVGGL V + DFR YF +FGK DAVVM D+ T RSRGFGFIT++ V +V+S +HE+ GK VE+K A P++ GGGG
Sbjct: 115 GKLFIGGVSWETTEDTLRQHFGKYGPLTDAALMKDKYTGQPRGFGFVTFADASAIDRVLEETHTLDGRSVEVKRAIPRERTAP--------GSSEIRGGGRGGFSSGGFTEQ---KKIFVGGLAPTVTEQDFRHYFEEFGKTTDAVVMIDRDTQRSRGFGFITFEEESSVAEVISK-SHEIHGKIVEIKRAEPKES----RGGGG 303
BLAST of mRNA_Ecto-sp13_S_contig6748.17664.1 vs. uniprot
Match: A0A5A7PXB6_STRAF (RNA-binding (RRM/RBD/RNP motifs) family protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7PXB6_STRAF) HSP 1 Score: 189 bits (481), Expect = 3.330e-54 Identity = 98/207 (47.34%), Postives = 135/207 (65.22%), Query Frame = 1
Query: 178 EGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQESTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRAAADRNSASARGGSQ-VGGRHGGMN-DAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDIVRKVMSGGTHELKGKSVEVKTAAPRDGPRQFNGGGG 792
+ K+F+GG++W+TTED+L HF K+G ++ ++ +++++G+PRGF FV F ES++ D AL+E H I GRT++VKRA+PR + ++RG S+ G + G N D T KIFVGGL + + +FR YFAKFG++ D VVM+D T R RGFGFITYDS D V +VM HEL GK VEVK A P+DG G G
Sbjct: 6 QNKLFVGGISWETTEDILNEHFNKYGVVSGSVIAKDRVSGQPRGFAFVTFSESSAVDRALQESHQILGRTVEVKRAIPRSEQQ------SQQQHNSRGLSRNFSGTNKGRNTDEFRTKKIFVGGLSTNLTEQEFRSYFAKFGRITDVVVMHDNMTHRPRGFGFITYDSEDSVEEVMQKNFHELAGKLVEVKRAVPKDGSNSSGNGYG 206
BLAST of mRNA_Ecto-sp13_S_contig6748.17664.1 vs. uniprot
Match: D8RTI0_SELML (Uncharacterized protein (Fragment) n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RTI0_SELML) HSP 1 Score: 183 bits (465), Expect = 3.520e-54 Identity = 93/195 (47.69%), Postives = 130/195 (66.67%), Query Frame = 1
Query: 178 EGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQESTSADAALKEEHVIDGRTIDVKRAVPRD-RAPLPRAAADRNSASARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDIVRKVMSGGTHELKGKSVEVKTAAPR 759
+GK+F+GG++W+TTE+ L+ +F ++G + + ++M+++ TG RGFGFV F + ++AD A+ E+H I+GR ++ K+AVPRD + +PR S+ + GG GG G T KIFVGGL V + +FRGYF +FG + DAVVMYD T R RGFGFIT+DS D V V+ HELK K VEVK A PR
Sbjct: 5 QGKLFIGGISWETTEEQLRDYFQRYGEIAETMIMKDRNTGRARGFGFVSFADPSAADMAVAEKHTINGRLVEAKKAVPRDEQQTIPR------SSISSGGQSPGGGQG------RTKKIFVGGLASTVTEEEFRGYFEQFGTISDAVVMYDHTTQRPRGFGFITFDSEDSVEAVLMKSFHELKDKMVEVKRAVPR 187
BLAST of mRNA_Ecto-sp13_S_contig6748.17664.1 vs. uniprot
Match: A0A5A7RED1_STRAF (RNA-binding (RRM/RBD/RNP motifs) family protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7RED1_STRAF) HSP 1 Score: 191 bits (485), Expect = 6.990e-54 Identity = 96/194 (49.48%), Postives = 129/194 (66.49%), Query Frame = 1
Query: 181 GKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQESTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRAAADRNSASARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDIVRKVMSGGTHELKGKSVEVKTAAPRD 762
GK+F+GG++W T E+ LK +FG +G + + ++MR++ TG RGFGF+ F + T A+ +KE+HVIDGRT++ K+AVPRD L +RNS+S+ GS + GR T KIFVGGL V + DF+ YF++FG + D VVMYD T R RGFGFITYDS D V +V+ HEL K VEVK A PR+
Sbjct: 13 GKLFVGGISWDTNEERLKDYFGTYGDVMEAVIMRDRTTGRARGFGFIVFADPTVAERVIKEKHVIDGRTVEAKKAVPRDDHNLT----NRNSSSSTQGSPIPGR---------TKKIFVGGLASTVTETDFKNYFSQFGSITDVVVMYDHNTQRPRGFGFITYDSEDAVDRVLHKTFHELNAKMVEVKRAVPRE 193 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6748.17664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6748.17664.1 >prot_Ecto-sp13_S_contig6748.17664.1 ID=prot_Ecto-sp13_S_contig6748.17664.1|Name=mRNA_Ecto-sp13_S_contig6748.17664.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=297bp MVTDEDPANGATAEAEAETNGTAETNDTADVTAAADGAPAVEGEKAKELSback to top mRNA from alignment at Ecto-sp13_S_contig6748:4719..7997+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6748.17664.1 ID=mRNA_Ecto-sp13_S_contig6748.17664.1|Name=mRNA_Ecto-sp13_S_contig6748.17664.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6748:4719..7997+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6748:4719..7997+ >mRNA_Ecto-sp13_S_contig6748.17664.1 ID=mRNA_Ecto-sp13_S_contig6748.17664.1|Name=mRNA_Ecto-sp13_S_contig6748.17664.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=891bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6748:4719..7997+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |