mRNA_Ecto-sp13_S_contig6746.17661.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6746.17661.1
Unique NamemRNA_Ecto-sp13_S_contig6746.17661.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6746.17661.1 vs. uniprot
Match: D7FIK6_ECTSI (Smr domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK6_ECTSI)

HSP 1 Score: 274 bits (700), Expect = 5.340e-93
Identity = 133/137 (97.08%), Postives = 136/137 (99.27%), Query Frame = 1
Query:    1 KDPSVVEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEPPLPTHFDPTNDGRLQVRKEDILAWCSRESEKGRRAPAPADDVGSLKLRGVADLKLAYDRAVYEAAAASTPGDRVKGKEAGWSGVGWSRNANESEMV 411
            KDPSVVEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEPPLPTHFDPTNDGRLQVRKEDILAWCSRESEKGRRAPAPADDVGSLKLRGVADLKLAYDRAVYEAAAA+TPGD V+GK+AGWSGVGWSRNANESEMV
Sbjct:   10 KDPSVVEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEPPLPTHFDPTNDGRLQVRKEDILAWCSRESEKGRRAPAPADDVGSLKLRGVADLKLAYDRAVYEAAAATTPGDGVEGKQAGWSGVGWSRNANESEMV 146          
BLAST of mRNA_Ecto-sp13_S_contig6746.17661.1 vs. uniprot
Match: A0A6H5KNR8_9PHAE (Smr domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNR8_9PHAE)

HSP 1 Score: 274 bits (700), Expect = 2.930e-83
Identity = 133/137 (97.08%), Postives = 135/137 (98.54%), Query Frame = 1
Query:    1 KDPSVVEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEPPLPTHFDPTNDGRLQVRKEDILAWCSRESEKGRRAPAPADDVGSLKLRGVADLKLAYDRAVYEAAAASTPGDRVKGKEAGWSGVGWSRNANESEMV 411
            KDPSVVEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEPPLPTHFDPTNDGRLQVRKEDILAWCSRESEKGRRAPAPADDVGSLKLRGVADLKLAYDRAV+EAAA +TPGD VKGKEAGWSGVGWSRNANESEMV
Sbjct: 1029 KDPSVVEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEPPLPTHFDPTNDGRLQVRKEDILAWCSRESEKGRRAPAPADDVGSLKLRGVADLKLAYDRAVHEAAATATPGDEVKGKEAGWSGVGWSRNANESEMV 1165          
BLAST of mRNA_Ecto-sp13_S_contig6746.17661.1 vs. uniprot
Match: A0A835YST6_9STRA (Smr domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YST6_9STRA)

HSP 1 Score: 103 bits (256), Expect = 7.030e-23
Identity = 50/104 (48.08%), Postives = 69/104 (66.35%), Query Frame = 1
Query:    1 KDPSVVEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEPPLPTHFDPTNDGRLQVRKEDILAWCSRESEKGRRAPAPADDVGSLKLRGVADLKLAYDRAVYE 312
            +D SVV  FTIITG GRHS+ AF+P +RP  Q MLLEE +PPL   F P N GRL V+K +++ W +++ +K  R   PADD G+LKL+  +DL+ ++     E
Sbjct: 1041 QDVSVVNDFTIITGIGRHSKLAFKPTVRPTVQAMLLEEQDPPLRAQFTPGNAGRLVVQKGELVNWLNKQGDKD-RVKTPADDAGNLKLKSASDLQQSFQERFTE 1143          
BLAST of mRNA_Ecto-sp13_S_contig6746.17661.1 vs. uniprot
Match: I2CPG0_NANGC (Putative udp-glucosyltransferase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPG0_NANGC)

HSP 1 Score: 62.8 bits (151), Expect = 5.830e-9
Identity = 28/71 (39.44%), Postives = 42/71 (59.15%), Query Frame = 1
Query:    7 PSVVEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEPPLPTHFDPTNDGRLQVRKEDILAWCSRESEKG 219
            P+ V+   +I+G G+ S   F P LRP  QDML+E++ PP+ +   P N GR+ V +E +LAW   +   G
Sbjct:  216 PAAVKDLVLISGVGKGSLVPFRPTLRPAVQDMLVEQYYPPIDSTTQPGNAGRVVVGRESLLAWLEGKEGGG 286          
BLAST of mRNA_Ecto-sp13_S_contig6746.17661.1 vs. uniprot
Match: A0A4D9CXQ2_9STRA (Smr domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CXQ2_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 9.450e-9
Identity = 28/71 (39.44%), Postives = 42/71 (59.15%), Query Frame = 1
Query:    7 PSVVEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEPPLPTHFDPTNDGRLQVRKEDILAWCSRESEKG 219
            P+ V+   +I+G G+ S   F P LRP  QDML+E++ PP+ +   P N GR+ V +E +LAW   +   G
Sbjct: 1080 PAAVKDLVLISGVGKGSLVPFRPTLRPAVQDMLVEQYYPPIDSTTQPGNAGRVVVGRESLLAWLEGKEGGG 1150          
BLAST of mRNA_Ecto-sp13_S_contig6746.17661.1 vs. uniprot
Match: D7G9B6_ECTSI (Smr domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B6_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 1.640e-8
Identity = 30/74 (40.54%), Postives = 42/74 (56.76%), Query Frame = 1
Query:    1 KDPSVVEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEPPLPTHFDPTNDGRLQVRKEDILAWCSRESEKGR 222
            ++ + +   TIITG GR S  AF+P++RP  Q ML +EF PPL +  +  N GR+ V  + I AW     E  R
Sbjct:   28 REGTALGDLTIITGMGRGSLHAFQPIIRPEVQRMLTDEFYPPLDSATEVGNTGRVVVSAKTIEAWLDHNVEAKR 101          
BLAST of mRNA_Ecto-sp13_S_contig6746.17661.1 vs. uniprot
Match: A0A7S2RYR1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYR1_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.230e-8
Identity = 29/65 (44.62%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    7 PSVVEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEPPLPTHFDPTNDGRLQVRKEDILAWCS 201
            P++  +  IITG+GR+SR   +PVLR V Q ML+EEF PP+ +   P N+GRL++    I  W +
Sbjct:  930 PTLFPRVVIITGKGRNSRH--QPVLREVVQQMLVEEFYPPISSTTVPGNEGRLEIENSGIRKWVA 992          
BLAST of mRNA_Ecto-sp13_S_contig6746.17661.1 vs. uniprot
Match: A0A7S3XTI1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTI1_HETAK)

HSP 1 Score: 60.5 bits (145), Expect = 5.550e-8
Identity = 31/66 (46.97%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   16 VEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEPPLPTHFDPTNDGRLQVRKEDILAWCSRESE 213
            V+   IITG G+HS    +PVLRP  Q+ML+EEF PP+ T   P N GR+ +  + IL W S  +E
Sbjct:  459 VKPIEIITGSGKHSINN-KPVLRPEIQNMLVEEFFPPIYTSTKPGNSGRIIITTDSILEWLSHTAE 523          
BLAST of mRNA_Ecto-sp13_S_contig6746.17661.1 vs. uniprot
Match: A0A6H5KZI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI4_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 6.240e-8
Identity = 30/74 (40.54%), Postives = 43/74 (58.11%), Query Frame = 1
Query:    1 KDPSVVEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEPPLPTHFDPTNDGRLQVRKEDILAWCSRESEKGR 222
            ++ + +   TIITG GR S  AF+P++RP  Q ML +EF PPL +  +  N GR+ V  + I AW  +  E  R
Sbjct: 1914 REGTALGDLTIITGMGRGSLHAFQPIIRPEVQRMLTDEFYPPLDSATEVGNTGRVVVSAKTIEAWLDQNVEAKR 1987          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6746.17661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FIK6_ECTSI5.340e-9397.08Smr domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KNR8_9PHAE2.930e-8397.08Smr domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YST6_9STRA7.030e-2348.08Smr domain-containing protein n=1 Tax=Tribonema mi... [more]
I2CPG0_NANGC5.830e-939.44Putative udp-glucosyltransferase (Fragment) n=1 Ta... [more]
A0A4D9CXQ2_9STRA9.450e-939.44Smr domain-containing protein n=2 Tax=Monodopsidac... [more]
D7G9B6_ECTSI1.640e-840.54Smr domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2RYR1_9STRA3.230e-844.62Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3XTI1_HETAK5.550e-846.97Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6H5KZI4_9PHAE6.240e-840.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6746contigEcto-sp13_S_contig6746:665..1634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score66.2
Seed ortholog evalue1.3e-08
Seed eggNOG ortholog35128.Thaps23650
Model size414
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Smr domain
EggNOG OGs2E0BI@1,2S7SI@2759,2XBQ9@2836
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_000100.1
Cds size414
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463927.5860856-CDS-Ecto-sp13_S_contig6746:664..8321681463927.5860856-CDS-Ecto-sp13_S_contig6746:664..832Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6746 665..832 +
1681463927.6043756-CDS-Ecto-sp13_S_contig6746:1388..16341681463927.6043756-CDS-Ecto-sp13_S_contig6746:1388..1634Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6746 1389..1634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6746.17661.1prot_Ecto-sp13_S_contig6746.17661.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6746 665..1634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6746.17661.1

>prot_Ecto-sp13_S_contig6746.17661.1 ID=prot_Ecto-sp13_S_contig6746.17661.1|Name=mRNA_Ecto-sp13_S_contig6746.17661.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=138bp
KDPSVVEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEPPLPTHFDPT
NDGRLQVRKEDILAWCSRESEKGRRAPAPADDVGSLKLRGVADLKLAYDR
AVYEAAAASTPGDRVKGKEAGWSGVGWSRNANESEMV*
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mRNA from alignment at Ecto-sp13_S_contig6746:665..1634+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6746.17661.1 ID=mRNA_Ecto-sp13_S_contig6746.17661.1|Name=mRNA_Ecto-sp13_S_contig6746.17661.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=970bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6746:665..1634+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAAGACCCTTCTGTGGTGGAACAGTTCACGATTATCACCGGACGAGGGAG ACACAGCCGGCAAGCCTTCGAGCCGGTGCTGAGGCCAGTGGCGCAAGACA TGCTCCTGGAGGAGTTCGAACCTCCCTTGCCAACGCACTTCGACCCTACC AACGACGGCCGCCTTCAGGTAGAAACAAATAATTTTTATCTTTACACTAT GGTTTGTCCGTTGCCGTGCATACGTTTTTCCTGCTTTTTTTGGCTGGGGT TTTGGTGGAGCTCCTCCGTGTTTTTCTTGACCAGACCGGGTTTGCAAGGC GTAGAGAGTCACGAGGCATATTTCGGCCGCGTTGCGGAAAGGACGTAAAC ACGAACGGATGGGGAGAAAATGTGGGTTGGATATTCCCGCCGCGCAATTT TGAAATGCTTCATCACGAGTGCGCACGTCGAACACACCGGCACACACACA AACGTATGGGCGTTTTCGGTCCTGTGATGATACCAACTGGCTTTGTGTTC ATCGGTGAACCGGTTAGCGCGGTCGATGCTAGTAATAAAGACACACATGG GAACTCCTGAGTTTCCCATGTCGGCAGGATCCTTCAAATGTTTAAAAGAG AGAGCGTGTTCGCATTTTTAATTCTCTGCTACAATAAGCCTTTTCATTGG TCAGCCGGTTAGCTCCGTCGACCCTAGTCACGGAGACGCACACACTGCAC ACACTCTCAACATTGCGTTTGCAGGTGCGAAAGGAGGACATACTTGCTTG GTGCTCGCGGGAGTCCGAAAAGGGCAGACGCGCACCCGCACCGGCCGATG ACGTGGGGTCTCTCAAGCTCCGCGGCGTGGCAGACCTAAAGTTGGCGTAC GACAGGGCCGTCTACGAAGCAGCAGCAGCGTCAACCCCAGGGGATAGAGT GAAGGGTAAAGAGGCGGGTTGGTCTGGGGTTGGGTGGAGCCGAAACGCCA ACGAGAGCGAGATGGTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6746:665..1634+

>mRNA_Ecto-sp13_S_contig6746.17661.1 ID=mRNA_Ecto-sp13_S_contig6746.17661.1|Name=mRNA_Ecto-sp13_S_contig6746.17661.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=414bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6746:665..1634+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAAGACCCTTCTGTGGTGGAACAGTTCACGATTATCACCGGACGAGGGAG
ACACAGCCGGCAAGCCTTCGAGCCGGTGCTGAGGCCAGTGGCGCAAGACA
TGCTCCTGGAGGAGTTCGAACCTCCCTTGCCAACGCACTTCGACCCTACC
AACGACGGCCGCCTTCAGGTGCGAAAGGAGGACATACTTGCTTGGTGCTC
GCGGGAGTCCGAAAAGGGCAGACGCGCACCCGCACCGGCCGATGACGTGG
GGTCTCTCAAGCTCCGCGGCGTGGCAGACCTAAAGTTGGCGTACGACAGG
GCCGTCTACGAAGCAGCAGCAGCGTCAACCCCAGGGGATAGAGTGAAGGG
TAAAGAGGCGGGTTGGTCTGGGGTTGGGTGGAGCCGAAACGCCAACGAGA
GCGAGATGGTGTGA
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