mRNA_Ecto-sp13_S_contig6746.17661.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6746.17661.1 vs. uniprot
Match: D7FIK6_ECTSI (Smr domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK6_ECTSI) HSP 1 Score: 274 bits (700), Expect = 5.340e-93 Identity = 133/137 (97.08%), Postives = 136/137 (99.27%), Query Frame = 1
Query: 1 KDPSVVEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEPPLPTHFDPTNDGRLQVRKEDILAWCSRESEKGRRAPAPADDVGSLKLRGVADLKLAYDRAVYEAAAASTPGDRVKGKEAGWSGVGWSRNANESEMV 411
KDPSVVEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEPPLPTHFDPTNDGRLQVRKEDILAWCSRESEKGRRAPAPADDVGSLKLRGVADLKLAYDRAVYEAAAA+TPGD V+GK+AGWSGVGWSRNANESEMV
Sbjct: 10 KDPSVVEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEPPLPTHFDPTNDGRLQVRKEDILAWCSRESEKGRRAPAPADDVGSLKLRGVADLKLAYDRAVYEAAAATTPGDGVEGKQAGWSGVGWSRNANESEMV 146
BLAST of mRNA_Ecto-sp13_S_contig6746.17661.1 vs. uniprot
Match: A0A6H5KNR8_9PHAE (Smr domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNR8_9PHAE) HSP 1 Score: 274 bits (700), Expect = 2.930e-83 Identity = 133/137 (97.08%), Postives = 135/137 (98.54%), Query Frame = 1
Query: 1 KDPSVVEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEPPLPTHFDPTNDGRLQVRKEDILAWCSRESEKGRRAPAPADDVGSLKLRGVADLKLAYDRAVYEAAAASTPGDRVKGKEAGWSGVGWSRNANESEMV 411
KDPSVVEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEPPLPTHFDPTNDGRLQVRKEDILAWCSRESEKGRRAPAPADDVGSLKLRGVADLKLAYDRAV+EAAA +TPGD VKGKEAGWSGVGWSRNANESEMV
Sbjct: 1029 KDPSVVEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEPPLPTHFDPTNDGRLQVRKEDILAWCSRESEKGRRAPAPADDVGSLKLRGVADLKLAYDRAVHEAAATATPGDEVKGKEAGWSGVGWSRNANESEMV 1165
BLAST of mRNA_Ecto-sp13_S_contig6746.17661.1 vs. uniprot
Match: A0A835YST6_9STRA (Smr domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YST6_9STRA) HSP 1 Score: 103 bits (256), Expect = 7.030e-23 Identity = 50/104 (48.08%), Postives = 69/104 (66.35%), Query Frame = 1
Query: 1 KDPSVVEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEPPLPTHFDPTNDGRLQVRKEDILAWCSRESEKGRRAPAPADDVGSLKLRGVADLKLAYDRAVYE 312
+D SVV FTIITG GRHS+ AF+P +RP Q MLLEE +PPL F P N GRL V+K +++ W +++ +K R PADD G+LKL+ +DL+ ++ E
Sbjct: 1041 QDVSVVNDFTIITGIGRHSKLAFKPTVRPTVQAMLLEEQDPPLRAQFTPGNAGRLVVQKGELVNWLNKQGDKD-RVKTPADDAGNLKLKSASDLQQSFQERFTE 1143
BLAST of mRNA_Ecto-sp13_S_contig6746.17661.1 vs. uniprot
Match: I2CPG0_NANGC (Putative udp-glucosyltransferase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPG0_NANGC) HSP 1 Score: 62.8 bits (151), Expect = 5.830e-9 Identity = 28/71 (39.44%), Postives = 42/71 (59.15%), Query Frame = 1
Query: 7 PSVVEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEPPLPTHFDPTNDGRLQVRKEDILAWCSRESEKG 219
P+ V+ +I+G G+ S F P LRP QDML+E++ PP+ + P N GR+ V +E +LAW + G
Sbjct: 216 PAAVKDLVLISGVGKGSLVPFRPTLRPAVQDMLVEQYYPPIDSTTQPGNAGRVVVGRESLLAWLEGKEGGG 286
BLAST of mRNA_Ecto-sp13_S_contig6746.17661.1 vs. uniprot
Match: A0A4D9CXQ2_9STRA (Smr domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CXQ2_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 9.450e-9 Identity = 28/71 (39.44%), Postives = 42/71 (59.15%), Query Frame = 1
Query: 7 PSVVEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEPPLPTHFDPTNDGRLQVRKEDILAWCSRESEKG 219
P+ V+ +I+G G+ S F P LRP QDML+E++ PP+ + P N GR+ V +E +LAW + G
Sbjct: 1080 PAAVKDLVLISGVGKGSLVPFRPTLRPAVQDMLVEQYYPPIDSTTQPGNAGRVVVGRESLLAWLEGKEGGG 1150
BLAST of mRNA_Ecto-sp13_S_contig6746.17661.1 vs. uniprot
Match: D7G9B6_ECTSI (Smr domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B6_ECTSI) HSP 1 Score: 60.1 bits (144), Expect = 1.640e-8 Identity = 30/74 (40.54%), Postives = 42/74 (56.76%), Query Frame = 1
Query: 1 KDPSVVEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEPPLPTHFDPTNDGRLQVRKEDILAWCSRESEKGR 222
++ + + TIITG GR S AF+P++RP Q ML +EF PPL + + N GR+ V + I AW E R
Sbjct: 28 REGTALGDLTIITGMGRGSLHAFQPIIRPEVQRMLTDEFYPPLDSATEVGNTGRVVVSAKTIEAWLDHNVEAKR 101
BLAST of mRNA_Ecto-sp13_S_contig6746.17661.1 vs. uniprot
Match: A0A7S2RYR1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYR1_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 3.230e-8 Identity = 29/65 (44.62%), Postives = 42/65 (64.62%), Query Frame = 1
Query: 7 PSVVEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEPPLPTHFDPTNDGRLQVRKEDILAWCS 201
P++ + IITG+GR+SR +PVLR V Q ML+EEF PP+ + P N+GRL++ I W +
Sbjct: 930 PTLFPRVVIITGKGRNSRH--QPVLREVVQQMLVEEFYPPISSTTVPGNEGRLEIENSGIRKWVA 992
BLAST of mRNA_Ecto-sp13_S_contig6746.17661.1 vs. uniprot
Match: A0A7S3XTI1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTI1_HETAK) HSP 1 Score: 60.5 bits (145), Expect = 5.550e-8 Identity = 31/66 (46.97%), Postives = 41/66 (62.12%), Query Frame = 1
Query: 16 VEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEPPLPTHFDPTNDGRLQVRKEDILAWCSRESE 213
V+ IITG G+HS +PVLRP Q+ML+EEF PP+ T P N GR+ + + IL W S +E
Sbjct: 459 VKPIEIITGSGKHSINN-KPVLRPEIQNMLVEEFFPPIYTSTKPGNSGRIIITTDSILEWLSHTAE 523
BLAST of mRNA_Ecto-sp13_S_contig6746.17661.1 vs. uniprot
Match: A0A6H5KZI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI4_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 6.240e-8 Identity = 30/74 (40.54%), Postives = 43/74 (58.11%), Query Frame = 1
Query: 1 KDPSVVEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEPPLPTHFDPTNDGRLQVRKEDILAWCSRESEKGR 222
++ + + TIITG GR S AF+P++RP Q ML +EF PPL + + N GR+ V + I AW + E R
Sbjct: 1914 REGTALGDLTIITGMGRGSLHAFQPIIRPEVQRMLTDEFYPPLDSATEVGNTGRVVVSAKTIEAWLDQNVEAKR 1987 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6746.17661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6746.17661.1 >prot_Ecto-sp13_S_contig6746.17661.1 ID=prot_Ecto-sp13_S_contig6746.17661.1|Name=mRNA_Ecto-sp13_S_contig6746.17661.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=138bp KDPSVVEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEPPLPTHFDPTback to top mRNA from alignment at Ecto-sp13_S_contig6746:665..1634+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6746.17661.1 ID=mRNA_Ecto-sp13_S_contig6746.17661.1|Name=mRNA_Ecto-sp13_S_contig6746.17661.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=970bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6746:665..1634+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6746:665..1634+ >mRNA_Ecto-sp13_S_contig6746.17661.1 ID=mRNA_Ecto-sp13_S_contig6746.17661.1|Name=mRNA_Ecto-sp13_S_contig6746.17661.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=414bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6746:665..1634+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |