mRNA_Ecto-sp13_S_contig6746.17662.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6746.17662.1
Unique NamemRNA_Ecto-sp13_S_contig6746.17662.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6746.17662.1 vs. uniprot
Match: A0A6H5KF35_9PHAE (ERCC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF35_9PHAE)

HSP 1 Score: 890 bits (2299), Expect = 9.780e-307
Identity = 580/709 (81.81%), Postives = 599/709 (84.49%), Query Frame = 1
Query:  193 GGAR--SNRRKHVRSSDPTNTRSN*DRSLPS*PCRRRLNNTDDNXXXXXXXASCSEXXXXXXXXTAASTHNGHSPLAPTRANGAAKPGVRLLIDNREKRGVTSNSQISHLTNYLNSRGVPYEVREWKIGDYGWVVQPDAGKPPAAGEVGYEREFVVPRLLERKRVDDLAESMKDGRLVRQKKAMLRAKSEGVAAEVEVHVEGNTADGRFVDEIYRRGLTPEDLDEVLRQAETQGFKVVHHNDFAAFSAYLANATQSLQRQFEARSLDFESFFTWQNFIRFSKGQVPLTPKSAAXXXXXXXXXXXXXXXXXXXXGRPPTSAMAGVCGRPPLALRPAGDGLRQRTLDGVFGVARRGEDVARGSSEAEGDCAAVGGARGREETGESRAPKSASTWEGAIDIDGFPDPGSASDSSDGCSVVEVVSRPVDGGGXXXXXXXXXXXXXXXXGSKRKAAPAAAVGTSXXXIAGXXXXXXXXXXSAIRTSPITLSPSKPGTAAASSRSVLHGGAGAEDSPLPTTLGRRGGGQSGSVDRNSSRRSKRPRPPDEGCCDGDDASSPLQSSAQGISGGGGSEWGGVEGTRNKKARSLSFVLDDEDDNKKDGXXRGGDGDLPQANGXXXXXXXXXXXXXXX-SLGSLPPTASRLV---VGGXXXXVVDLSLDSPSPPVPPRSRPRTAVSPPRPSXXXGGGISGGAGTDGIVLEACSSDDEFAL 2301
            GG R  S+RRK VR SDP  TRS+ DRSLP   C R +N TDD        ASCSE   XXXXXTAAST NGHSPLAPTRANGAAKPGVRLLIDNREKRGVTSNSQISHLTNYLNSRGVPYEVREWKIGDYGWVVQPDAGKPPAAGEVGYEREFVVPRLLERKRVDDLAESMKDGRLVRQKKAMLRAKSEGVAAEVEVHVEG+TADGRFVDEIYRRGLTPEDLDE LRQAETQGFKVV HNDFA+FSAYLA+ATQSLQ QFEARSLDFESFFTWQN IRFSKGQVP+TP SA XXXXXXXXXXXXXXXXXX  GRPPTSA+AG CGRPPLA RPA  GLRQRTLDG FGVARRGED+ARGS +AEGDCAAVG AR REE+ ESRAPK+ASTWEGAIDIDG PDPG+ASDSSDGCSVVEVV RP+DGGG   XXXXXXXXXXXXX  K K+APA      XXX   XXXXXXXXX S  RTSPITLSPS+PG +A SSRSVLHGG GAEDSPLPTTL R GGGQSGSV RNSS R KRPRP DEG  DGD ASSPLQ  AQGI  G G EWGGVEGTR KKARSLSFV DDE       XX     DL QAN XXXXXXXXXXXXXXX SLGSLPP ASR V      XXXXVVDLSLDSPSPPVPPRSRPRTAVSPPRP+   GG +SGGAGTDGIVLEACSSDDEFAL
Sbjct:  471 GGGRPWSDRRKPVRPSDPKKTRSDCDRSLPPYSCHRPVNITDDKDNDNDRYASCSERDGXXXXXTAASTRNGHSPLAPTRANGAAKPGVRLLIDNREKRGVTSNSQISHLTNYLNSRGVPYEVREWKIGDYGWVVQPDAGKPPAAGEVGYEREFVVPRLLERKRVDDLAESMKDGRLVRQKKAMLRAKSEGVAAEVEVHVEGDTADGRFVDEIYRRGLTPEDLDEALRQAETQGFKVVRHNDFASFSAYLADATQSLQIQFEARSLDFESFFTWQNLIRFSKGQVPVTPTSAXXXXXXXXXXXXXXXXXXXRRGRPPTSAVAGGCGRPPLASRPACGGLRQRTLDGAFGVARRGEDIARGSGKAEGDCAAVGDARVREESAESRAPKAASTWEGAIDIDGSPDPGAASDSSDGCSVVEVVVRPIDGGGGSAXXXXXXXXXXXXXXXKGKSAPAXXXXXXXXXXXXXXXXXXXXXSSVRRTSPITLSPSEPGRSATSSRSVLHGGEGAEDSPLPTTLARGGGGQSGSVGRNSSSRRKRPRPADEGSRDGDGASSPLQYWAQGIKSGDGREWGGVEGTRIKKARSLSFVCDDEXXXXXXXXXXXXXSDLRQANXXXXXXXXXXXXXXXXXSLGSLPPAASRSVDXXXXXXXXXVVDLSLDSPSPPVPPRSRPRTAVSPPRPTSSSGGAVSGGAGTDGIVLEACSSDDEFAL 1179          
BLAST of mRNA_Ecto-sp13_S_contig6746.17662.1 vs. uniprot
Match: D7FIK5_ECTSI (ERCC4 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK5_ECTSI)

HSP 1 Score: 584 bits (1506), Expect = 1.330e-196
Identity = 424/541 (78.37%), Postives = 435/541 (80.41%), Query Frame = 1
Query:  700 MKDGRLVRQKKAMLRAKSEGVAAEVEVHVEGNTADGRFVDEIYRRGLTPEDLDEVLRQAETQGFKVVHHNDFAAFSAYLANATQSLQRQFEARSLDFESFFTWQNFIRFSKGQVPLTPKSAAXXXXXXXXXXXXXXXXXXXXGRPPTSAMAGVCGRPPLALRPAGDGLRQRTLDGVFGVARRGEDVARGSSEAEGDCAAVGGARGREETGESRAPKSASTWEGAIDIDGFPDPGSASDSSDGCSVVEVVSRPVDGGGXXXXXXXXXXXXXXXXGSKRKAAPAAAVGTSXXXIAGXXXXXXXXXXSAI----RTSPITLSPSKPGTAAASSRSVLHGGAGAEDSPLPTTLGRRGGGQSGSVDRNSSRRSKRPRPPDEGCCDGDDASSPLQSSAQGISGGGGSEWGGVEGTRNKKARSLSFVLDDEDDNKKDGXXRGGDGDLPQANGXXXXXXXXXXXXXXXSLGSLPPTASRLVVGGXXXXVVDLSLDSPSPPVPPRSRPRT---AVSPPRPSXXXGGGISGGAGTDGIVLEACSSDDEFAL 2301
            MKDGRLVRQKKAMLRAKS+GVAAEVEVHVEG+TADGRFVDEIYRRGLTPEDLDE LRQAETQGFKVV HNDFAAFSAYLA+ATQSLQRQFEARSLDFESFFTWQN IRFSKGQVPLTPKSAAXXXXXXXXXXXXXXXXXXXXGRPPTSA A        A RPAGDGLRQRTLDGVFGVAR GED A G  EAEG+C AVGGARGREET ES APK+AST EGAIDIDG PDPGSASDSSDGCSVVEVV RP+DGG XXXXXXXXXXXXXXXXGSKRKAAPA A GT XXX   XXXXXXXXXX       RTSPI LSPS+PG A   SRSVLHGG GAEDSPLPTTLGRR GGQSGSV RNSSRRSKRPRP DEG   GD +SSPLQS AQGISGGGGSEWGGVEGTRNKKARSLSFVLDDE       XX            XXXXXXXXXXXXXXX  GSLP  ASR V  GXXXX                        AVSPPRP+   GGG+SGG GTDGIVLEACSSDDEF+L
Sbjct:    1 MKDGRLVRQKKAMLRAKSDGVAAEVEVHVEGDTADGRFVDEIYRRGLTPEDLDEALRQAETQGFKVVRHNDFAAFSAYLADATQSLQRQFEARSLDFESFFTWQNLIRFSKGQVPLTPKSAAXXXXXXXXXXXXXXXXXXXXGRPPTSAAAXXXXXXXXASRPAGDGLRQRTLDGVFGVARSGEDGASGGGEAEGNCPAVGGARGREETAESHAPKAASTREGAIDIDGSPDPGSASDSSDGCSVVEVVVRPIDGGXXXXXXXXXXXXXXXXXGSKRKAAPAVAAGTXXXXXXXXXXXXXXXXXXXXXXVSRTSPIALSPSEPGAAXXXSRSVLHGGGGAEDSPLPTTLGRRAGGQSGSVGRNSSRRSKRPRPADEGSRGGDGSSSPLQSCAQGISGGGGSEWGGVEGTRNKKARSLSFVLDDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGSLPSAASRSVHDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVSPPRPTSSSGGGVSGGTGTDGIVLEACSSDDEFSL 541          
BLAST of mRNA_Ecto-sp13_S_contig6746.17662.1 vs. uniprot
Match: D7FIK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK4_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 2.110e-15
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 1
Query:  340 ASCSEXXXXXXXXTAASTHNGHSPLAPTRANGAAKPGVRLLIDNREKRGVTSNSQ 504
            ASCSE   XXXXXTAASTHNGHSPLAPTRANGAAKPGVRLLIDNRE+RGVTSNSQ
Sbjct:  430 ASCSERDGXXXXXTAASTHNGHSPLAPTRANGAAKPGVRLLIDNRERRGVTSNSQ 484          
BLAST of mRNA_Ecto-sp13_S_contig6746.17662.1 vs. uniprot
Match: UPI0007E7B1B1 (crossover junction endonuclease MUS81 n=1 Tax=Drosophila eugracilis TaxID=29029 RepID=UPI0007E7B1B1)

HSP 1 Score: 73.6 bits (179), Expect = 7.110e-10
Identity = 58/178 (32.58%), Postives = 89/178 (50.00%), Query Frame = 1
Query:  457 LLIDNREKRGVTSNSQISHLT-NYLNSRGVPYEVREWKIGDYGWVVQPDAGKPPAAGEVGYEREFVVPRLLERKRVDDLAESMKDGRLVRQKKAMLRAKSEGVAAEVEVHVEGNTADGRFVDEIYRRGLTPEDLDEVLRQAETQ-GFKVVHHNDFAAFSAYLANATQSLQRQFEARSL 984
            LL+D +E  G   N ++   T +YL S GV YEVR   +GD+ WV Q   G            E V+P ++ERKR+DDLA S++DGR   QK  + ++  + +   VE + +             + GL  E L + L  A+ Q G +VV   +     +YLA  ++SL + F ++ L
Sbjct:  155 LLVDTQETSG--KNKRVLDQTGSYLESLGVRYEVRRLTVGDFLWVAQDKQGN-----------ELVLPYIIERKRMDDLASSIRDGRFHEQKHRLQQSGLKKIIYLVEDYGDNE-----------QLGLPLESLQQALANAKVQSGVQVVRTENHYRSMSYLAGMSRSLDQIFSSKRL 308          
BLAST of mRNA_Ecto-sp13_S_contig6746.17662.1 vs. uniprot
Match: B3MYD5_DROAN (ERCC4 domain-containing protein n=3 Tax=ananassae subgroup TaxID=32347 RepID=B3MYD5_DROAN)

HSP 1 Score: 72.8 bits (177), Expect = 1.280e-9
Identity = 58/180 (32.22%), Postives = 90/180 (50.00%), Query Frame = 1
Query:  451 VRLLIDNREKRGVTSNSQISHLT-NYLNSRGVPYEVREWKIGDYGWVVQPDAGKPPAAGEVGYEREFVVPRLLERKRVDDLAESMKDGRLVRQKKAMLRAKSEGVAAEVEVHVEGNTADGRFVDEIYRRGLTPEDLDEVLRQAETQ-GFKVVHHNDFAAFSAYLANATQSLQRQFEARSL 984
            + LL+D +E  G   N ++   T +YL S G  +EVR   IGD+ W+ +  AG            E V+P ++ERKR+DDLA S++DGR   QK  + ++    V   VE + +             + GL  + L + L  A  Q G +VV   +     +YLA+ T+SLQ+ F  ++L
Sbjct:  158 ILLLVDTQETSG--KNKRVLDQTRSYLESFGAKHEVRRLTIGDFLWIAKDRAGN-----------ELVLPYIIERKRMDDLASSIRDGRFHEQKHRLKQSGLRHVIYLVEDYGDNE-----------QLGLPLDSLQQALANARVQTGVQVVRTENHYRSMSYLASMTRSLQQIFARKTL 313          
BLAST of mRNA_Ecto-sp13_S_contig6746.17662.1 vs. uniprot
Match: A0A482XCR8_LAOST (Bromo domain-containing protein n=1 Tax=Laodelphax striatellus TaxID=195883 RepID=A0A482XCR8_LAOST)

HSP 1 Score: 73.6 bits (179), Expect = 1.490e-9
Identity = 61/184 (33.15%), Postives = 84/184 (45.65%), Query Frame = 1
Query:  451 VRLLIDNREKRGVTSN--SQISHLTNYLNSRGVPYEVREWKIGDYGWVVQPDAGKPPAAGEVGYEREFVVPRLLERKRVDDLAESMKDGRLVRQKKAMLRAKSEGVAAEVEVHVEGNTADGRFVDEIYRR---GLTPEDLDEVLRQAE-TQGFKVVHHNDFAAFSAYLANATQSLQRQFEARSL 984
            +RLL+D  E  G T+    +    T YL   GVP+EVR   +GD+ WV Q  A            RE ++P ++ERKR DDLA+S+KDGR   QK    R K   +A  +             V+E+ R+   GL    L +     +   GFKV   N+      YLA  T+ L   F  + L
Sbjct:  516 IRLLVDTAETFGHTAKRWKREEEATAYLTELGVPFEVRRLTVGDFVWVCQDAASA----------RELLLPYIVERKRADDLAKSIKDGRFREQK---FRLKQLPIAERI-----------YLVEELKRKDRPGLPFSTLMQAATNTQLVDGFKVKFTNNLKHSMQYLATMTEFLTEAFSKKIL 675          
BLAST of mRNA_Ecto-sp13_S_contig6746.17662.1 vs. uniprot
Match: UPI00193E4554 (crossover junction endonuclease MUS81 isoform X1 n=1 Tax=Nilaparvata lugens TaxID=108931 RepID=UPI00193E4554)

HSP 1 Score: 73.2 bits (178), Expect = 1.750e-9
Identity = 57/177 (32.20%), Postives = 83/177 (46.89%), Query Frame = 1
Query:  451 VRLLIDNREKRGVTSNSQ--ISHLTNYLNSRGVPYEVREWKIGDYGWVVQPDAGKPPAAGEVGYEREFVVPRLLERKRVDDLAESMKDGRLVRQKKAMLRAKSEGVAAEVEVHVEGNTADGRFVDEIYRRGLTPEDLDEVLRQAET-QGFKVVHHNDFAAFSAYLANATQSLQRQFE 972
            ++LL+D  E  G        ++  T YL   GVP+EVR   +GD+ WV+Q            G  RE ++P ++ERKR DDLA+S+KDGR   QK    R K   VA  + +  E    D        R+GL    L + +   +   GFKV   N+      +L+  T  L + F+
Sbjct:  400 IKLLVDTAETSGNMGKRSRGVAEATAYLTELGVPFEVRHLPVGDFVWVLQD-----------GVSRELLLPYIVERKRADDLAKSIKDGRFREQK---FRLKQLPVAERIYLVEELKGKD--------RKGLPLSTLMQAVTNTQVIDGFKVKFTNNLKHSMQFLSVMTDFLTKNFD 554          
BLAST of mRNA_Ecto-sp13_S_contig6746.17662.1 vs. uniprot
Match: A0A1W4VFN3_DROFC (crossover junction endonuclease MUS81 n=1 Tax=Drosophila ficusphila TaxID=30025 RepID=A0A1W4VFN3_DROFC)

HSP 1 Score: 72.0 bits (175), Expect = 2.170e-9
Identity = 57/178 (32.02%), Postives = 86/178 (48.31%), Query Frame = 1
Query:  457 LLIDNREKRGVTSNSQISHLT-NYLNSRGVPYEVREWKIGDYGWVVQPDAGKPPAAGEVGYEREFVVPRLLERKRVDDLAESMKDGRLVRQKKAMLRAKSEGVAAEVEVHVEGNTADGRFVDEIYRRGLTPEDLDEVLRQAETQ-GFKVVHHNDFAAFSAYLANATQSLQRQFEARSL 984
            LL+D +E  G   N ++   T NYL S GV +EVR   IGD+ W+ Q   G            E V+P ++ERKR+DDLA S++DGR   QK  + ++    +   VE + +             + GL  + L + L  A  Q G +VV   +     +YLA   +SL + F ++ L
Sbjct:  154 LLVDTQETSG--KNKRVLDQTRNYLESLGVRHEVRRLTIGDFLWIAQDQKGN-----------ELVLPHIIERKRMDDLASSIRDGRFHEQKHRLQQSGLRNIVYLVEDYGDNE-----------QLGLPLDSLQQALANARVQTGIQVVRTENHYRSMSYLAGMGRSLGQIFASKRL 307          
BLAST of mRNA_Ecto-sp13_S_contig6746.17662.1 vs. uniprot
Match: UPI000BA82C06 (crossover junction endonuclease MUS81-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA82C06)

HSP 1 Score: 72.8 bits (177), Expect = 2.370e-9
Identity = 61/216 (28.24%), Postives = 98/216 (45.37%), Query Frame = 1
Query:  451 VRLLIDNREKRGVTSNSQISHLTNYLNSRGVPYEVREWKIGDYGWVVQPDAGKPPAAGEVGYEREFVVPRLLERKRVDDLAESMKDGRLVRQKKAMLRAKSEGVAAEVEVHVEGNTADGRFVDEIYRRGLTPEDLDEVLRQAET-QGFKVVHHNDFAAFSAYLANATQSLQRQFEARSLDF-------------ESFFTWQNFIRFSKGQVPLTPK 1056
            + L +DN E  G TS  +   +   L   GVP+ VR+  +GD+ W+ +      P + ++   RE V+  ++ERKR+DDLA S+KDGR   QK    R K+ G+   +  ++  +   G         GL  + L + +   +   GF +    D     AYL   T+ LQ Q++ ++L               +SF T+  F   S    P+T K
Sbjct:  415 IVLCVDNCETSGGTSAKRKMAVLPELQRNGVPHVVRKLHVGDFLWIAKEKVEPLPGSLQLPQARELVLDFIVERKRMDDLASSIKDGRFREQK---FRMKACGLCRPI--YLVEDFGSGHL-------GLPDKTLQQAIFNTQVIDGFTIKRTRDQKESIAYLTLITRHLQNQYKDQTLASCTKEDVVCDKRRSQSFMTFHEFNNSSMKNKPMTVK 618          
BLAST of mRNA_Ecto-sp13_S_contig6746.17662.1 vs. uniprot
Match: A0A5N6JTT6_MONLA (ERCC4 domain-containing protein n=1 Tax=Monilinia laxa TaxID=61186 RepID=A0A5N6JTT6_MONLA)

HSP 1 Score: 72.0 bits (175), Expect = 3.720e-9
Identity = 62/199 (31.16%), Postives = 90/199 (45.23%), Query Frame = 1
Query:  397 NGHSPLAPTRANGAAKPG---VRLLIDNREKRGVTSNSQISHLTNYLNSRGVPYEVREWKIGDYGWVVQPDAGKPPAAGEVGYEREFVVPRLLERKRVDDLAESMKDGRLVRQKKAMLRAKSEGVAAEVEVHVEGNTADGRFVDEIYRRGLTPEDLDEVLRQAETQGFKVVHHNDFAAFSAYLANATQSLQRQFEARSL 984
            +G S   PT      +PG   V L++DNRE   V S      ++N L   GVP+ VR   +GD+ WV +    K    G +G     V+  ++ERKR+DDL  S+KDGR   QK    R K  G+   V+  +E    D   + E +  G+T      + +     G  V    D      Y+   T  LQ Q+E++ L
Sbjct:  273 DGDSMSIPTFQPIVLRPGTFTVELILDNRE---VASKKDRDGISNQLTDMGVPHSVRALPLGDFLWVARVREDKVKWTG-LGKSNLIVLDYIMERKRLDDLIGSIKDGRYEEQK---FRLKRSGIT-NVKYLIENKRVDAAIM-ERWSDGITT----SIAKMKVQDGIYVKQTQDLGESLRYIKRMTTLLQAQYESKPL 458          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6746.17662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KF35_9PHAE9.780e-30781.81ERCC4 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FIK5_ECTSI1.330e-19678.37ERCC4 domain containing protein n=1 Tax=Ectocarpus... [more]
D7FIK4_ECTSI2.110e-1592.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI0007E7B1B17.110e-1032.58crossover junction endonuclease MUS81 n=1 Tax=Dros... [more]
B3MYD5_DROAN1.280e-932.22ERCC4 domain-containing protein n=3 Tax=ananassae ... [more]
A0A482XCR8_LAOST1.490e-933.15Bromo domain-containing protein n=1 Tax=Laodelphax... [more]
UPI00193E45541.750e-932.20crossover junction endonuclease MUS81 isoform X1 n... [more]
A0A1W4VFN3_DROFC2.170e-932.02crossover junction endonuclease MUS81 n=1 Tax=Dros... [more]
UPI000BA82C062.370e-928.24crossover junction endonuclease MUS81-like n=1 Tax... [more]
A0A5N6JTT6_MONLA3.720e-931.16ERCC4 domain-containing protein n=1 Tax=Monilinia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6746contigEcto-sp13_S_contig6746:2987..8014 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2909
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionERCC4 domain containing protein
Ec32 orthologEc-27_000090.1
Cds size1605
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6746.17662.1prot_Ecto-sp13_S_contig6746.17662.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6746 3592..6171 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463927.4844694-UTR-Ecto-sp13_S_contig6746:2986..35911681463927.4844694-UTR-Ecto-sp13_S_contig6746:2986..3591Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6746 2987..3591 -
1681463927.533473-UTR-Ecto-sp13_S_contig6746:6171..62431681463927.533473-UTR-Ecto-sp13_S_contig6746:6171..6243Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6746 6172..6243 -
1681463927.5430658-UTR-Ecto-sp13_S_contig6746:6713..68361681463927.5430658-UTR-Ecto-sp13_S_contig6746:6713..6836Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6746 6714..6836 -
1681463927.5514517-UTR-Ecto-sp13_S_contig6746:7510..80141681463927.5514517-UTR-Ecto-sp13_S_contig6746:7510..8014Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6746 7511..8014 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463927.4954028-CDS-Ecto-sp13_S_contig6746:3591..50011681463927.4954028-CDS-Ecto-sp13_S_contig6746:3591..5001Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6746 3592..5001 -
1681463927.5101826-CDS-Ecto-sp13_S_contig6746:5237..54211681463927.5101826-CDS-Ecto-sp13_S_contig6746:5237..5421Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6746 5238..5421 -
1681463927.5200102-CDS-Ecto-sp13_S_contig6746:6160..61711681463927.5200102-CDS-Ecto-sp13_S_contig6746:6160..6171Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6746 6161..6171 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6746.17662.1

>prot_Ecto-sp13_S_contig6746.17662.1 ID=prot_Ecto-sp13_S_contig6746.17662.1|Name=mRNA_Ecto-sp13_S_contig6746.17662.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=535bp
MKDGRLVRQKKAMLRAKSEGVAAEVEVHVEGNTADGRFVDEIYRRGLTPE
DLDEVLRQAETQGFKVVHHNDFAAFSAYLANATQSLQRQFEARSLDFESF
FTWQNFIRFSKGQVPLTPKSAAAAAAAGKAAAAAKAARGGRRGRPPTSAM
AGVCGRPPLALRPAGDGLRQRTLDGVFGVARRGEDVARGSSEAEGDCAAV
GGARGREETGESRAPKSASTWEGAIDIDGFPDPGSASDSSDGCSVVEVVS
RPVDGGGGTGSGSSTGSGSGSTSGSKRKAAPAAAVGTSSSSIAGGGVSSA
AAASSAIRTSPITLSPSKPGTAAASSRSVLHGGAGAEDSPLPTTLGRRGG
GQSGSVDRNSSRRSKRPRPPDEGCCDGDDASSPLQSSAQGISGGGGSEWG
GVEGTRNKKARSLSFVLDDEDDNKKDGGGRGGDGDLPQANGSGSASGSGD
GKGSGSSLGSLPPTASRLVVGGGGGGVVDLSLDSPSPPVPPRSRPRTAVS
PPRPSSSSGGGISGGAGTDGIVLEACSSDDEFAL*
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mRNA from alignment at Ecto-sp13_S_contig6746:2987..8014-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6746.17662.1 ID=mRNA_Ecto-sp13_S_contig6746.17662.1|Name=mRNA_Ecto-sp13_S_contig6746.17662.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5028bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6746:2987..8014- (Ectocarpus species13 EcNAP12_S_4_19m)
CGGAGTGAGGGTTCTCCACCCCGCACGACATGATCTACTCGACCACTGTT GTGGTTACCGCAAAATAAAACACCAGAGGAAAAAAAACCGGTAACCTGGT TGCCGAGTTCACGAAGCGAAGTGGCTTGTTTTACAACGTCGTTGCCATAC GACGAAAACCCAATTCCGATGGCAAACACCGCGGGTGCCAGGGGGGGGGC TCGGTCAAATCGTAGAAAACATGTTCGCTCCTCAGATCCTACAAATACTC GCTCCAACTGAGATAGATCCCTTCCGTCGTAGCCATGCCGCCGGCGTCTA AACAACACGGATGATAATGATAATGATAATGATAGGTACGCGAGCTGCTC GGAGAGGGACGGCGGGGGCGGGGGCGGGACGGCCGCTTCGACCCACAACG GGCACTCCCCGCTGGCGCCGACGAGAGCCAACGGAGCCGCCAAGCCCGGG GTGAGGCTGCTCATCGACAACAGGGAGAAGCGGGGGGTGACGAGTAACAG CCAGGTGATGCACGGTCGGTTGAGCCGCCGAGAGAGAGAGAGAGAGAGCA GGTGCCCGCACTATCGGGGATGTCGTAGTAATGGTTTTTCGTTTGGTGCT TCGTGAAACATACGATTTGCTGATCTTTACTCTCAAGCCGTGCATTCTCT TCTTCCCAATGCTGTGGTATGGTACAACGCCCTGATGTGCTTTTGACAGT GCGTTGTGGTGTGGCTGCTCTCGATGTTACCGGCCAGTAAACAACGCATC GCCCAGGTCGACGCACGTCGGATTTTCTTGAAAGCATGGCGGAGGGACAG AGCTTAAAGCGGAGTTAAGTTTGTTCGGTTTTCGAATAGCCAGAAGACTA CCGCAACAAGTTCAGTCCCGAAGCCAAAAACCCCGTACTGCAAAGTAGGA AGGAACGATTGGCCATCGGGGATCGGTCCTGTGGGAACACTACTCCGTCC TCTCGAGGACGCGTGGTCAATGGTCTAACCGATAAGGCATGCCAAACGTA GGAGTACGCCCCCCACTCCCCCTCCCCCCGGCAAAACGAGCACCGGTGTC AGGACCGGTGCGCTGTTCCAACAACCCTTATCGTTTGCGTCTTAAAGCCT CGTTCCTTCGCCGCCGGCTCCCGCCCTGCTGACACTCCTCTCGTCCTGCT CCCCTCCAACCCCCTGCGTTACGCGAAGATTTCTCATCTGACGAACTACC TCAACAGCCGCGGCGTGCCTTACGAGGTTCGGGAGTGGAAGATCGGGGAC TACGGCTGGGTGGTGCAGCCAGACGCGGGGAAACCTCCCGCAGCGGGGGA GGTACGTTTTGATTGCTTCGTGTGCGGTCGCAGTACCCCGTGGAGTTGCA GTGTTTCCCACCCCAGTCCCTTTCTCTTGCTCGCAGTAGCGCTTTAGCAG CGGGGGCTACGGTTGCGACGGGCGTGGCAAATTGTTGGCGTCATGGTGCG CGAAGAATCGTCCCGCAAACTCCTCTTTTCTGTGGCCGTTGTTGTGTTGT CGTGTAGGACTGACTCATCAGCGGGCGCTCCCCTTCTCAGCGGGAACAAC ATGGATGTGCGTTTTTACCGTACAAGAACGAAAAGATCCTGTGCGACCCA CATACATCATACATCAGAAACGAGTGGAGACAGAATGAATGAGACGGAGG CACCCGCCTTCTCATCAACAACGGAAGGGTGCCGCTACCCTTACTTCCCG CCGCCTCTACAGTCCCGACATGATTCTCATTCCTGTGTCCCGCTTGTCGC TCTCCTTTTTTTTGGTCACAGGTAGGGTACGAAAGGGAGTTCGTAGTGCC GCGTCTCCTGGAGAGGAAGCGCGTCGATGATCTTGCCGAGTCCATGAAGG ACGGGTGCGTTTCTCAGTCTCGGATGTACGAGCTGTTGTACATCAGATAC GCCGATGGCGTGAGGTTGGCTGGTTTGGGGTCTCTGGTGTGGGAGCGGAA TAGTTCGAAGGGAGAAGGGGAAGCGAGGTTTTCCTGTAGTGTTAAGTGGA AGCAAGGTTTTCCTGTAGTGTGAAGTTGGCTGTTTGAGCGTGTCTGGCGT TGGAGCGGAATCAATCGGGGAGAGACGAAGGTTTGGTCGCTTCTGCCAGT CTACGGGAGGGGGATGCAGAAGGCTGGTGGTTTCGACGAGCCAACCATGG CGGGTGTGCGGCGCACCTTGGTTGGGTGAAGGGCCGGCGCCCTTCCGAGA TTGCCGAGAGAAGGGCACGACCGGGGGCTTATTATCCGGGGGCATATTTT CTGACTTTTATGATGCGTGTGATAGAGCACGACCATCATGTGGGCGAGCA CCCGGTGCTCAGTATCAAGCTGACCCCACACCCGGCCCTGGTAATGTACA TAGGTAGGTGAGGTTATGTACCACACACCCTAGACCGATTTCCAAAGCTC GATTCGTCCACAACGACGAGGATGACAACATCAAAATCATACGTTTTGGA AAGCTCTCTCTCTCAACAACACCACTTTCAGCACAGTCCTGCAGAGTAAT CGGGCTTTGAAAAGAGGTCTTGTGCAACCTGCACGCGCTGAACTCCCTCG ATCCGAGAATCGTATCCTATCTCTTGTCGGTGAACATCTGTAGGCGCCTG GTGCGTCAGAAGAAGGCCATGCTTCGCGCCAAGAGCGAAGGAGTCGCGGC CGAGGTTGAAGTGCACGTGGAGGGAAACACGGCAGACGGGCGCTTCGTGG ACGAGATCTACCGTCGAGGTTTGACTCCCGAGGACCTCGACGAGGTGCTG CGTCAAGCGGAAACGCAGGGGTTCAAGGTGCGCCCTTCTTCGTTGTTGTT GTGATGAGGCGTGTTTCGGATGATGATGATAGTGTGACCGCCGCCGCTCT CGAAACGAAAAAGCGATATCGGAGTGATGGTTGGCTCTTGACAAATGGCT TGGACGGATCCGCACTACAACGCGCATGGGCTCCTTCTCCGTGCAGCCGT GTTGTTAACTCCGTTCCATCGGCTTTTTTGTTGCGACGGTGACGACTGGT TTGTCCTGCGCAGGTGGTGCACCATAATGACTTCGCCGCCTTCAGCGCCT ACCTCGCGAACGCGACACAGTCCCTCCAGAGACAGTTCGAAGCCAGATCG CTCGACTTCGAATCCTTCTTCACCTGGCAGAACTTCATCCGCTTCAGCAA GGGCCAGGTGCCCCTCACCCCCAAGAGCGCGGCTGCCGCCGCTGCCGCAG GCAAAGCCGCTGCTGCCGCCAAAGCCGCGCGCGGAGGCAGGCGGGGTCGG CCCCCGACGTCCGCGATGGCTGGGGTGTGCGGTCGACCCCCACTTGCCTT ACGGCCTGCCGGCGACGGATTGCGCCAGCGCACGCTTGACGGGGTTTTCG GGGTGGCGAGGAGGGGCGAAGACGTCGCCAGGGGCAGCAGTGAGGCGGAG GGTGATTGCGCCGCTGTCGGCGGTGCGCGGGGTCGAGAAGAAACTGGAGA AAGCCGTGCCCCGAAGTCCGCGTCGACGTGGGAAGGTGCCATCGACATCG ACGGGTTCCCCGACCCCGGTTCAGCCTCCGACTCTTCCGATGGCTGTAGC GTCGTTGAAGTAGTCTCTCGCCCCGTCGACGGAGGTGGTGGTACCGGTTC CGGCTCTTCTACGGGTAGCGGTAGTGGTTCGACCTCAGGTAGCAAGAGGA AGGCCGCGCCAGCGGCGGCGGTGGGAACCTCATCTTCATCCATTGCTGGT GGAGGCGTCTCGTCCGCAGCTGCTGCTTCCAGCGCTATTAGGACATCGCC GATAACTCTGTCCCCGTCAAAACCAGGAACGGCGGCGGCCTCGTCGAGAT CAGTTCTTCACGGGGGGGCGGGGGCGGAGGACTCTCCGTTGCCGACGACG TTGGGAAGGAGGGGCGGGGGGCAGAGCGGTAGCGTAGACCGGAACTCGAG CAGGCGCAGCAAGCGCCCTCGACCGCCGGACGAGGGTTGTTGTGACGGAG ACGATGCCTCCTCTCCTCTCCAGTCTAGCGCGCAGGGCATTAGCGGTGGT GGTGGGAGTGAGTGGGGCGGTGTAGAAGGGACAAGAAACAAGAAGGCGCG GTCGCTCTCTTTCGTATTGGACGACGAGGACGACAATAAAAAAGATGGCG GTGGGAGAGGTGGCGACGGTGATCTGCCGCAGGCGAACGGCTCCGGGAGC GCCAGCGGTAGCGGCGATGGGAAGGGGTCGGGGTCGTCGCTCGGTTCCTT GCCCCCTACCGCTTCGCGTTTGGTTGTCGGCGGCGGCGGCGGCGGCGTCG TGGACCTCAGCCTGGATAGCCCGTCGCCCCCTGTGCCGCCGCGCTCTCGG CCTCGAACCGCCGTTTCGCCGCCGAGACCGAGCTCCTCGAGCGGCGGGGG AATAAGCGGAGGGGCAGGAACGGACGGTATCGTACTAGAAGCGTGTTCTT CGGACGATGAATTCGCTTTGTAGTGTTGGGGCATGAGTCGAAAACTCACG GGACGTCGGCGCACATGACGTCGGCGCACACATCGTCGGCGCACGTCATT GTCAGTGCGCTGATTGTGTGTGCCTGCAGGCATGGGATTTACTCTTCCGG CAACGTGTTTATACAGTAAATAGTGTAAAAGTATCCCTGGTTGGTTACAC CGACCGTTTTCTTTCGGGCTGTTGCCTTTTTGGGGGGGGGGGAATTACAG TAGATATATGCGGTGGTCGGTCACCGAAGCGTGCGCGTGACGGCGTCCGC CAATGTGTGATTTTCGTTCAAGCAGAATCTTTTTCTTTGAGGTTGTGCAG ATAGGAAGTTGGAATGGAGTAAGGAACTTTGCCAAGGGGGGAGGCAGCAT GTCTAGAGTTTGTTTCTCGACGGAGTGGAGGAGAGGCGGAAAGGGGTTCG GTGACGAGAGGCGTGCGCGCACGTACTATACACAATGGGCCATTGCTACA CGTGAGAATCCCAAATCGAGCGGCAATCCATCAAAATCCCTTGCGGTCGA TCCCATGAAGCACAACAAGGCTTTGCTCCGGCAACACACCGAACCAAACC CGCCCCTTTGCTGGAGCTGCAAGAGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6746:2987..8014-

>mRNA_Ecto-sp13_S_contig6746.17662.1 ID=mRNA_Ecto-sp13_S_contig6746.17662.1|Name=mRNA_Ecto-sp13_S_contig6746.17662.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1605bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6746:2987..8014- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGACGGGCGCCTGGTGCGTCAGAAGAAGGCCATGCTTCGCGCCAA
GAGCGAAGGAGTCGCGGCCGAGGTTGAAGTGCACGTGGAGGGAAACACGG
CAGACGGGCGCTTCGTGGACGAGATCTACCGTCGAGGTTTGACTCCCGAG
GACCTCGACGAGGTGCTGCGTCAAGCGGAAACGCAGGGGTTCAAGGTGGT
GCACCATAATGACTTCGCCGCCTTCAGCGCCTACCTCGCGAACGCGACAC
AGTCCCTCCAGAGACAGTTCGAAGCCAGATCGCTCGACTTCGAATCCTTC
TTCACCTGGCAGAACTTCATCCGCTTCAGCAAGGGCCAGGTGCCCCTCAC
CCCCAAGAGCGCGGCTGCCGCCGCTGCCGCAGGCAAAGCCGCTGCTGCCG
CCAAAGCCGCGCGCGGAGGCAGGCGGGGTCGGCCCCCGACGTCCGCGATG
GCTGGGGTGTGCGGTCGACCCCCACTTGCCTTACGGCCTGCCGGCGACGG
ATTGCGCCAGCGCACGCTTGACGGGGTTTTCGGGGTGGCGAGGAGGGGCG
AAGACGTCGCCAGGGGCAGCAGTGAGGCGGAGGGTGATTGCGCCGCTGTC
GGCGGTGCGCGGGGTCGAGAAGAAACTGGAGAAAGCCGTGCCCCGAAGTC
CGCGTCGACGTGGGAAGGTGCCATCGACATCGACGGGTTCCCCGACCCCG
GTTCAGCCTCCGACTCTTCCGATGGCTGTAGCGTCGTTGAAGTAGTCTCT
CGCCCCGTCGACGGAGGTGGTGGTACCGGTTCCGGCTCTTCTACGGGTAG
CGGTAGTGGTTCGACCTCAGGTAGCAAGAGGAAGGCCGCGCCAGCGGCGG
CGGTGGGAACCTCATCTTCATCCATTGCTGGTGGAGGCGTCTCGTCCGCA
GCTGCTGCTTCCAGCGCTATTAGGACATCGCCGATAACTCTGTCCCCGTC
AAAACCAGGAACGGCGGCGGCCTCGTCGAGATCAGTTCTTCACGGGGGGG
CGGGGGCGGAGGACTCTCCGTTGCCGACGACGTTGGGAAGGAGGGGCGGG
GGGCAGAGCGGTAGCGTAGACCGGAACTCGAGCAGGCGCAGCAAGCGCCC
TCGACCGCCGGACGAGGGTTGTTGTGACGGAGACGATGCCTCCTCTCCTC
TCCAGTCTAGCGCGCAGGGCATTAGCGGTGGTGGTGGGAGTGAGTGGGGC
GGTGTAGAAGGGACAAGAAACAAGAAGGCGCGGTCGCTCTCTTTCGTATT
GGACGACGAGGACGACAATAAAAAAGATGGCGGTGGGAGAGGTGGCGACG
GTGATCTGCCGCAGGCGAACGGCTCCGGGAGCGCCAGCGGTAGCGGCGAT
GGGAAGGGGTCGGGGTCGTCGCTCGGTTCCTTGCCCCCTACCGCTTCGCG
TTTGGTTGTCGGCGGCGGCGGCGGCGGCGTCGTGGACCTCAGCCTGGATA
GCCCGTCGCCCCCTGTGCCGCCGCGCTCTCGGCCTCGAACCGCCGTTTCG
CCGCCGAGACCGAGCTCCTCGAGCGGCGGGGGAATAAGCGGAGGGGCAGG
AACGGACGGTATCGTACTAGAAGCGTGTTCTTCGGACGATGAATTCGCTT
TGTAG
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