mRNA_Ecto-sp13_S_contig6746.17662.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6746.17662.1 vs. uniprot
Match: A0A6H5KF35_9PHAE (ERCC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF35_9PHAE) HSP 1 Score: 890 bits (2299), Expect = 9.780e-307 Identity = 580/709 (81.81%), Postives = 599/709 (84.49%), Query Frame = 1
Query: 193 GGAR--SNRRKHVRSSDPTNTRSN*DRSLPS*PCRRRLNNTDDNXXXXXXXASCSEXXXXXXXXTAASTHNGHSPLAPTRANGAAKPGVRLLIDNREKRGVTSNSQISHLTNYLNSRGVPYEVREWKIGDYGWVVQPDAGKPPAAGEVGYEREFVVPRLLERKRVDDLAESMKDGRLVRQKKAMLRAKSEGVAAEVEVHVEGNTADGRFVDEIYRRGLTPEDLDEVLRQAETQGFKVVHHNDFAAFSAYLANATQSLQRQFEARSLDFESFFTWQNFIRFSKGQVPLTPKSAAXXXXXXXXXXXXXXXXXXXXGRPPTSAMAGVCGRPPLALRPAGDGLRQRTLDGVFGVARRGEDVARGSSEAEGDCAAVGGARGREETGESRAPKSASTWEGAIDIDGFPDPGSASDSSDGCSVVEVVSRPVDGGGXXXXXXXXXXXXXXXXGSKRKAAPAAAVGTSXXXIAGXXXXXXXXXXSAIRTSPITLSPSKPGTAAASSRSVLHGGAGAEDSPLPTTLGRRGGGQSGSVDRNSSRRSKRPRPPDEGCCDGDDASSPLQSSAQGISGGGGSEWGGVEGTRNKKARSLSFVLDDEDDNKKDGXXRGGDGDLPQANGXXXXXXXXXXXXXXX-SLGSLPPTASRLV---VGGXXXXVVDLSLDSPSPPVPPRSRPRTAVSPPRPSXXXGGGISGGAGTDGIVLEACSSDDEFAL 2301
GG R S+RRK VR SDP TRS+ DRSLP C R +N TDD ASCSE XXXXXTAAST NGHSPLAPTRANGAAKPGVRLLIDNREKRGVTSNSQISHLTNYLNSRGVPYEVREWKIGDYGWVVQPDAGKPPAAGEVGYEREFVVPRLLERKRVDDLAESMKDGRLVRQKKAMLRAKSEGVAAEVEVHVEG+TADGRFVDEIYRRGLTPEDLDE LRQAETQGFKVV HNDFA+FSAYLA+ATQSLQ QFEARSLDFESFFTWQN IRFSKGQVP+TP SA XXXXXXXXXXXXXXXXXX GRPPTSA+AG CGRPPLA RPA GLRQRTLDG FGVARRGED+ARGS +AEGDCAAVG AR REE+ ESRAPK+ASTWEGAIDIDG PDPG+ASDSSDGCSVVEVV RP+DGGG XXXXXXXXXXXXX K K+APA XXX XXXXXXXXX S RTSPITLSPS+PG +A SSRSVLHGG GAEDSPLPTTL R GGGQSGSV RNSS R KRPRP DEG DGD ASSPLQ AQGI G G EWGGVEGTR KKARSLSFV DDE XX DL QAN XXXXXXXXXXXXXXX SLGSLPP ASR V XXXXVVDLSLDSPSPPVPPRSRPRTAVSPPRP+ GG +SGGAGTDGIVLEACSSDDEFAL
Sbjct: 471 GGGRPWSDRRKPVRPSDPKKTRSDCDRSLPPYSCHRPVNITDDKDNDNDRYASCSERDGXXXXXTAASTRNGHSPLAPTRANGAAKPGVRLLIDNREKRGVTSNSQISHLTNYLNSRGVPYEVREWKIGDYGWVVQPDAGKPPAAGEVGYEREFVVPRLLERKRVDDLAESMKDGRLVRQKKAMLRAKSEGVAAEVEVHVEGDTADGRFVDEIYRRGLTPEDLDEALRQAETQGFKVVRHNDFASFSAYLADATQSLQIQFEARSLDFESFFTWQNLIRFSKGQVPVTPTSAXXXXXXXXXXXXXXXXXXXRRGRPPTSAVAGGCGRPPLASRPACGGLRQRTLDGAFGVARRGEDIARGSGKAEGDCAAVGDARVREESAESRAPKAASTWEGAIDIDGSPDPGAASDSSDGCSVVEVVVRPIDGGGGSAXXXXXXXXXXXXXXXKGKSAPAXXXXXXXXXXXXXXXXXXXXXSSVRRTSPITLSPSEPGRSATSSRSVLHGGEGAEDSPLPTTLARGGGGQSGSVGRNSSSRRKRPRPADEGSRDGDGASSPLQYWAQGIKSGDGREWGGVEGTRIKKARSLSFVCDDEXXXXXXXXXXXXXSDLRQANXXXXXXXXXXXXXXXXXSLGSLPPAASRSVDXXXXXXXXXVVDLSLDSPSPPVPPRSRPRTAVSPPRPTSSSGGAVSGGAGTDGIVLEACSSDDEFAL 1179
BLAST of mRNA_Ecto-sp13_S_contig6746.17662.1 vs. uniprot
Match: D7FIK5_ECTSI (ERCC4 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK5_ECTSI) HSP 1 Score: 584 bits (1506), Expect = 1.330e-196 Identity = 424/541 (78.37%), Postives = 435/541 (80.41%), Query Frame = 1
Query: 700 MKDGRLVRQKKAMLRAKSEGVAAEVEVHVEGNTADGRFVDEIYRRGLTPEDLDEVLRQAETQGFKVVHHNDFAAFSAYLANATQSLQRQFEARSLDFESFFTWQNFIRFSKGQVPLTPKSAAXXXXXXXXXXXXXXXXXXXXGRPPTSAMAGVCGRPPLALRPAGDGLRQRTLDGVFGVARRGEDVARGSSEAEGDCAAVGGARGREETGESRAPKSASTWEGAIDIDGFPDPGSASDSSDGCSVVEVVSRPVDGGGXXXXXXXXXXXXXXXXGSKRKAAPAAAVGTSXXXIAGXXXXXXXXXXSAI----RTSPITLSPSKPGTAAASSRSVLHGGAGAEDSPLPTTLGRRGGGQSGSVDRNSSRRSKRPRPPDEGCCDGDDASSPLQSSAQGISGGGGSEWGGVEGTRNKKARSLSFVLDDEDDNKKDGXXRGGDGDLPQANGXXXXXXXXXXXXXXXSLGSLPPTASRLVVGGXXXXVVDLSLDSPSPPVPPRSRPRT---AVSPPRPSXXXGGGISGGAGTDGIVLEACSSDDEFAL 2301
MKDGRLVRQKKAMLRAKS+GVAAEVEVHVEG+TADGRFVDEIYRRGLTPEDLDE LRQAETQGFKVV HNDFAAFSAYLA+ATQSLQRQFEARSLDFESFFTWQN IRFSKGQVPLTPKSAAXXXXXXXXXXXXXXXXXXXXGRPPTSA A A RPAGDGLRQRTLDGVFGVAR GED A G EAEG+C AVGGARGREET ES APK+AST EGAIDIDG PDPGSASDSSDGCSVVEVV RP+DGG XXXXXXXXXXXXXXXXGSKRKAAPA A GT XXX XXXXXXXXXX RTSPI LSPS+PG A SRSVLHGG GAEDSPLPTTLGRR GGQSGSV RNSSRRSKRPRP DEG GD +SSPLQS AQGISGGGGSEWGGVEGTRNKKARSLSFVLDDE XX XXXXXXXXXXXXXXX GSLP ASR V GXXXX AVSPPRP+ GGG+SGG GTDGIVLEACSSDDEF+L
Sbjct: 1 MKDGRLVRQKKAMLRAKSDGVAAEVEVHVEGDTADGRFVDEIYRRGLTPEDLDEALRQAETQGFKVVRHNDFAAFSAYLADATQSLQRQFEARSLDFESFFTWQNLIRFSKGQVPLTPKSAAXXXXXXXXXXXXXXXXXXXXGRPPTSAAAXXXXXXXXASRPAGDGLRQRTLDGVFGVARSGEDGASGGGEAEGNCPAVGGARGREETAESHAPKAASTREGAIDIDGSPDPGSASDSSDGCSVVEVVVRPIDGGXXXXXXXXXXXXXXXXXGSKRKAAPAVAAGTXXXXXXXXXXXXXXXXXXXXXXVSRTSPIALSPSEPGAAXXXSRSVLHGGGGAEDSPLPTTLGRRAGGQSGSVGRNSSRRSKRPRPADEGSRGGDGSSSPLQSCAQGISGGGGSEWGGVEGTRNKKARSLSFVLDDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGSLPSAASRSVHDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVSPPRPTSSSGGGVSGGTGTDGIVLEACSSDDEFSL 541
BLAST of mRNA_Ecto-sp13_S_contig6746.17662.1 vs. uniprot
Match: D7FIK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK4_ECTSI) HSP 1 Score: 91.3 bits (225), Expect = 2.110e-15 Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 1
Query: 340 ASCSEXXXXXXXXTAASTHNGHSPLAPTRANGAAKPGVRLLIDNREKRGVTSNSQ 504
ASCSE XXXXXTAASTHNGHSPLAPTRANGAAKPGVRLLIDNRE+RGVTSNSQ
Sbjct: 430 ASCSERDGXXXXXTAASTHNGHSPLAPTRANGAAKPGVRLLIDNRERRGVTSNSQ 484
BLAST of mRNA_Ecto-sp13_S_contig6746.17662.1 vs. uniprot
Match: UPI0007E7B1B1 (crossover junction endonuclease MUS81 n=1 Tax=Drosophila eugracilis TaxID=29029 RepID=UPI0007E7B1B1) HSP 1 Score: 73.6 bits (179), Expect = 7.110e-10 Identity = 58/178 (32.58%), Postives = 89/178 (50.00%), Query Frame = 1
Query: 457 LLIDNREKRGVTSNSQISHLT-NYLNSRGVPYEVREWKIGDYGWVVQPDAGKPPAAGEVGYEREFVVPRLLERKRVDDLAESMKDGRLVRQKKAMLRAKSEGVAAEVEVHVEGNTADGRFVDEIYRRGLTPEDLDEVLRQAETQ-GFKVVHHNDFAAFSAYLANATQSLQRQFEARSL 984
LL+D +E G N ++ T +YL S GV YEVR +GD+ WV Q G E V+P ++ERKR+DDLA S++DGR QK + ++ + + VE + + + GL E L + L A+ Q G +VV + +YLA ++SL + F ++ L
Sbjct: 155 LLVDTQETSG--KNKRVLDQTGSYLESLGVRYEVRRLTVGDFLWVAQDKQGN-----------ELVLPYIIERKRMDDLASSIRDGRFHEQKHRLQQSGLKKIIYLVEDYGDNE-----------QLGLPLESLQQALANAKVQSGVQVVRTENHYRSMSYLAGMSRSLDQIFSSKRL 308
BLAST of mRNA_Ecto-sp13_S_contig6746.17662.1 vs. uniprot
Match: B3MYD5_DROAN (ERCC4 domain-containing protein n=3 Tax=ananassae subgroup TaxID=32347 RepID=B3MYD5_DROAN) HSP 1 Score: 72.8 bits (177), Expect = 1.280e-9 Identity = 58/180 (32.22%), Postives = 90/180 (50.00%), Query Frame = 1
Query: 451 VRLLIDNREKRGVTSNSQISHLT-NYLNSRGVPYEVREWKIGDYGWVVQPDAGKPPAAGEVGYEREFVVPRLLERKRVDDLAESMKDGRLVRQKKAMLRAKSEGVAAEVEVHVEGNTADGRFVDEIYRRGLTPEDLDEVLRQAETQ-GFKVVHHNDFAAFSAYLANATQSLQRQFEARSL 984
+ LL+D +E G N ++ T +YL S G +EVR IGD+ W+ + AG E V+P ++ERKR+DDLA S++DGR QK + ++ V VE + + + GL + L + L A Q G +VV + +YLA+ T+SLQ+ F ++L
Sbjct: 158 ILLLVDTQETSG--KNKRVLDQTRSYLESFGAKHEVRRLTIGDFLWIAKDRAGN-----------ELVLPYIIERKRMDDLASSIRDGRFHEQKHRLKQSGLRHVIYLVEDYGDNE-----------QLGLPLDSLQQALANARVQTGVQVVRTENHYRSMSYLASMTRSLQQIFARKTL 313
BLAST of mRNA_Ecto-sp13_S_contig6746.17662.1 vs. uniprot
Match: A0A482XCR8_LAOST (Bromo domain-containing protein n=1 Tax=Laodelphax striatellus TaxID=195883 RepID=A0A482XCR8_LAOST) HSP 1 Score: 73.6 bits (179), Expect = 1.490e-9 Identity = 61/184 (33.15%), Postives = 84/184 (45.65%), Query Frame = 1
Query: 451 VRLLIDNREKRGVTSN--SQISHLTNYLNSRGVPYEVREWKIGDYGWVVQPDAGKPPAAGEVGYEREFVVPRLLERKRVDDLAESMKDGRLVRQKKAMLRAKSEGVAAEVEVHVEGNTADGRFVDEIYRR---GLTPEDLDEVLRQAE-TQGFKVVHHNDFAAFSAYLANATQSLQRQFEARSL 984
+RLL+D E G T+ + T YL GVP+EVR +GD+ WV Q A RE ++P ++ERKR DDLA+S+KDGR QK R K +A + V+E+ R+ GL L + + GFKV N+ YLA T+ L F + L
Sbjct: 516 IRLLVDTAETFGHTAKRWKREEEATAYLTELGVPFEVRRLTVGDFVWVCQDAASA----------RELLLPYIVERKRADDLAKSIKDGRFREQK---FRLKQLPIAERI-----------YLVEELKRKDRPGLPFSTLMQAATNTQLVDGFKVKFTNNLKHSMQYLATMTEFLTEAFSKKIL 675
BLAST of mRNA_Ecto-sp13_S_contig6746.17662.1 vs. uniprot
Match: UPI00193E4554 (crossover junction endonuclease MUS81 isoform X1 n=1 Tax=Nilaparvata lugens TaxID=108931 RepID=UPI00193E4554) HSP 1 Score: 73.2 bits (178), Expect = 1.750e-9 Identity = 57/177 (32.20%), Postives = 83/177 (46.89%), Query Frame = 1
Query: 451 VRLLIDNREKRGVTSNSQ--ISHLTNYLNSRGVPYEVREWKIGDYGWVVQPDAGKPPAAGEVGYEREFVVPRLLERKRVDDLAESMKDGRLVRQKKAMLRAKSEGVAAEVEVHVEGNTADGRFVDEIYRRGLTPEDLDEVLRQAET-QGFKVVHHNDFAAFSAYLANATQSLQRQFE 972
++LL+D E G ++ T YL GVP+EVR +GD+ WV+Q G RE ++P ++ERKR DDLA+S+KDGR QK R K VA + + E D R+GL L + + + GFKV N+ +L+ T L + F+
Sbjct: 400 IKLLVDTAETSGNMGKRSRGVAEATAYLTELGVPFEVRHLPVGDFVWVLQD-----------GVSRELLLPYIVERKRADDLAKSIKDGRFREQK---FRLKQLPVAERIYLVEELKGKD--------RKGLPLSTLMQAVTNTQVIDGFKVKFTNNLKHSMQFLSVMTDFLTKNFD 554
BLAST of mRNA_Ecto-sp13_S_contig6746.17662.1 vs. uniprot
Match: A0A1W4VFN3_DROFC (crossover junction endonuclease MUS81 n=1 Tax=Drosophila ficusphila TaxID=30025 RepID=A0A1W4VFN3_DROFC) HSP 1 Score: 72.0 bits (175), Expect = 2.170e-9 Identity = 57/178 (32.02%), Postives = 86/178 (48.31%), Query Frame = 1
Query: 457 LLIDNREKRGVTSNSQISHLT-NYLNSRGVPYEVREWKIGDYGWVVQPDAGKPPAAGEVGYEREFVVPRLLERKRVDDLAESMKDGRLVRQKKAMLRAKSEGVAAEVEVHVEGNTADGRFVDEIYRRGLTPEDLDEVLRQAETQ-GFKVVHHNDFAAFSAYLANATQSLQRQFEARSL 984
LL+D +E G N ++ T NYL S GV +EVR IGD+ W+ Q G E V+P ++ERKR+DDLA S++DGR QK + ++ + VE + + + GL + L + L A Q G +VV + +YLA +SL + F ++ L
Sbjct: 154 LLVDTQETSG--KNKRVLDQTRNYLESLGVRHEVRRLTIGDFLWIAQDQKGN-----------ELVLPHIIERKRMDDLASSIRDGRFHEQKHRLQQSGLRNIVYLVEDYGDNE-----------QLGLPLDSLQQALANARVQTGIQVVRTENHYRSMSYLAGMGRSLGQIFASKRL 307
BLAST of mRNA_Ecto-sp13_S_contig6746.17662.1 vs. uniprot
Match: UPI000BA82C06 (crossover junction endonuclease MUS81-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA82C06) HSP 1 Score: 72.8 bits (177), Expect = 2.370e-9 Identity = 61/216 (28.24%), Postives = 98/216 (45.37%), Query Frame = 1
Query: 451 VRLLIDNREKRGVTSNSQISHLTNYLNSRGVPYEVREWKIGDYGWVVQPDAGKPPAAGEVGYEREFVVPRLLERKRVDDLAESMKDGRLVRQKKAMLRAKSEGVAAEVEVHVEGNTADGRFVDEIYRRGLTPEDLDEVLRQAET-QGFKVVHHNDFAAFSAYLANATQSLQRQFEARSLDF-------------ESFFTWQNFIRFSKGQVPLTPK 1056
+ L +DN E G TS + + L GVP+ VR+ +GD+ W+ + P + ++ RE V+ ++ERKR+DDLA S+KDGR QK R K+ G+ + ++ + G GL + L + + + GF + D AYL T+ LQ Q++ ++L +SF T+ F S P+T K
Sbjct: 415 IVLCVDNCETSGGTSAKRKMAVLPELQRNGVPHVVRKLHVGDFLWIAKEKVEPLPGSLQLPQARELVLDFIVERKRMDDLASSIKDGRFREQK---FRMKACGLCRPI--YLVEDFGSGHL-------GLPDKTLQQAIFNTQVIDGFTIKRTRDQKESIAYLTLITRHLQNQYKDQTLASCTKEDVVCDKRRSQSFMTFHEFNNSSMKNKPMTVK 618
BLAST of mRNA_Ecto-sp13_S_contig6746.17662.1 vs. uniprot
Match: A0A5N6JTT6_MONLA (ERCC4 domain-containing protein n=1 Tax=Monilinia laxa TaxID=61186 RepID=A0A5N6JTT6_MONLA) HSP 1 Score: 72.0 bits (175), Expect = 3.720e-9 Identity = 62/199 (31.16%), Postives = 90/199 (45.23%), Query Frame = 1
Query: 397 NGHSPLAPTRANGAAKPG---VRLLIDNREKRGVTSNSQISHLTNYLNSRGVPYEVREWKIGDYGWVVQPDAGKPPAAGEVGYEREFVVPRLLERKRVDDLAESMKDGRLVRQKKAMLRAKSEGVAAEVEVHVEGNTADGRFVDEIYRRGLTPEDLDEVLRQAETQGFKVVHHNDFAAFSAYLANATQSLQRQFEARSL 984
+G S PT +PG V L++DNRE V S ++N L GVP+ VR +GD+ WV + K G +G V+ ++ERKR+DDL S+KDGR QK R K G+ V+ +E D + E + G+T + + G V D Y+ T LQ Q+E++ L
Sbjct: 273 DGDSMSIPTFQPIVLRPGTFTVELILDNRE---VASKKDRDGISNQLTDMGVPHSVRALPLGDFLWVARVREDKVKWTG-LGKSNLIVLDYIMERKRLDDLIGSIKDGRYEEQK---FRLKRSGIT-NVKYLIENKRVDAAIM-ERWSDGITT----SIAKMKVQDGIYVKQTQDLGESLRYIKRMTTLLQAQYESKPL 458 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6746.17662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6746.17662.1 >prot_Ecto-sp13_S_contig6746.17662.1 ID=prot_Ecto-sp13_S_contig6746.17662.1|Name=mRNA_Ecto-sp13_S_contig6746.17662.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=535bp MKDGRLVRQKKAMLRAKSEGVAAEVEVHVEGNTADGRFVDEIYRRGLTPEback to top mRNA from alignment at Ecto-sp13_S_contig6746:2987..8014- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6746.17662.1 ID=mRNA_Ecto-sp13_S_contig6746.17662.1|Name=mRNA_Ecto-sp13_S_contig6746.17662.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5028bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6746:2987..8014- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6746:2987..8014- >mRNA_Ecto-sp13_S_contig6746.17662.1 ID=mRNA_Ecto-sp13_S_contig6746.17662.1|Name=mRNA_Ecto-sp13_S_contig6746.17662.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1605bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6746:2987..8014- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |