mRNA_Ecto-sp13_S_contig67258.17625.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig67258.17625.1 vs. uniprot
Match: A0A6H5KWM4_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWM4_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 4.530e-16 Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 1
Query: 1 LAKVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNMDG 114
+ +VNLPKDHVANTHRGFGFVEFE+EEDAKAAIDNMDG
Sbjct: 35 IVEVNLPKDHVANTHRGFGFVEFELEEDAKAAIDNMDG 72
BLAST of mRNA_Ecto-sp13_S_contig67258.17625.1 vs. uniprot
Match: A0A059LPL0_9CHLO (RRM domain-containing protein n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LPL0_9CHLO) HSP 1 Score: 51.6 bits (122), Expect = 4.310e-7 Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 1
Query: 10 VNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNM 108
V++P DH + THRGFGFVEFE+ EDA A+DNM
Sbjct: 15 VSIPLDHASGTHRGFGFVEFELPEDAADAVDNM 47
BLAST of mRNA_Ecto-sp13_S_contig67258.17625.1 vs. uniprot
Match: A0A061R9Z2_9CHLO (Peptidyl-prolyl cis-trans isomerase e-like n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R9Z2_9CHLO) HSP 1 Score: 52.0 bits (123), Expect = 5.220e-7 Identity = 24/33 (72.73%), Postives = 26/33 (78.79%), Query Frame = 1
Query: 10 VNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNM 108
VN+P DH A THRGFGFVEF EDA +AIDNM
Sbjct: 46 VNIPLDHTAGTHRGFGFVEFLDSEDAASAIDNM 78
BLAST of mRNA_Ecto-sp13_S_contig67258.17625.1 vs. uniprot
Match: A0A835Z2R3_9STRA (Peptidyl-prolyl cis-trans isomerase E n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2R3_9STRA) HSP 1 Score: 51.2 bits (121), Expect = 6.760e-7 Identity = 22/38 (57.89%), Postives = 31/38 (81.58%), Query Frame = 1
Query: 1 LAKVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNMDG 114
L +V +P++ + T+RGFGFVE+E EEDA AA++NMDG
Sbjct: 35 LVEVQIPREWKSGTNRGFGFVEYEAEEDASAAMENMDG 72
BLAST of mRNA_Ecto-sp13_S_contig67258.17625.1 vs. uniprot
Match: Q0CYG8_ASPTN (RRM domain-containing protein n=2 Tax=Aspergillus terreus TaxID=33178 RepID=Q0CYG8_ASPTN) HSP 1 Score: 50.8 bits (120), Expect = 8.880e-7 Identity = 25/38 (65.79%), Postives = 29/38 (76.32%), Query Frame = 1
Query: 10 VNLPKDHVANT---HRGFGFVEFEVEEDAKAAIDNMDG 114
+ LPK V NT HRGFG+VEF++ EDAK AIDNMDG
Sbjct: 17 ITLPKPDVPNTNEAHRGFGYVEFDLPEDAKEAIDNMDG 54
BLAST of mRNA_Ecto-sp13_S_contig67258.17625.1 vs. uniprot
Match: A0A6U1IIJ7_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A6U1IIJ7_9CHLO) HSP 1 Score: 51.2 bits (121), Expect = 9.300e-7 Identity = 24/33 (72.73%), Postives = 27/33 (81.82%), Query Frame = 1
Query: 10 VNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNM 108
VN+P DH A THRGFGFVEF ++DA AAIDNM
Sbjct: 46 VNVPLDHSAGTHRGFGFVEFIDKDDAAAAIDNM 78
BLAST of mRNA_Ecto-sp13_S_contig67258.17625.1 vs. uniprot
Match: A0A7S1IR69_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IR69_9EUGL) HSP 1 Score: 50.4 bits (119), Expect = 9.880e-7 Identity = 23/35 (65.71%), Postives = 29/35 (82.86%), Query Frame = 1
Query: 10 VNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNMDG 114
VN+P D V +RGFGFVEFE++EDA AAI+NM+G
Sbjct: 42 VNMPLDQVNQKNRGFGFVEFELQEDAAAAIENMNG 76
BLAST of mRNA_Ecto-sp13_S_contig67258.17625.1 vs. uniprot
Match: A0A183J811_9BILA (RRM domain-containing protein n=1 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183J811_9BILA) HSP 1 Score: 50.1 bits (118), Expect = 1.240e-6 Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 1
Query: 1 LAKVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNM 108
+ V++P D+ + +HRGFGFVEFE+E DA AAIDNM
Sbjct: 39 IVDVSIPLDYESQSHRGFGFVEFELEADAMAAIDNM 74
BLAST of mRNA_Ecto-sp13_S_contig67258.17625.1 vs. uniprot
Match: A0A7S2V6A5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6A5_9STRA) HSP 1 Score: 50.4 bits (119), Expect = 1.270e-6 Identity = 22/38 (57.89%), Postives = 31/38 (81.58%), Query Frame = 1
Query: 1 LAKVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNMDG 114
+ +VN+P+D + +RGFGFV+FE E+DA AAI+NMDG
Sbjct: 40 IVEVNIPRDFQKDLNRGFGFVDFEDEKDASAAIENMDG 77
BLAST of mRNA_Ecto-sp13_S_contig67258.17625.1 vs. uniprot
Match: H2Z0T3_CIOSA (Peptidyl-prolyl cis-trans isomerase E n=4 Tax=Ciona savignyi TaxID=51511 RepID=H2Z0T3_CIOSA) HSP 1 Score: 51.6 bits (122), Expect = 1.820e-6 Identity = 24/36 (66.67%), Postives = 27/36 (75.00%), Query Frame = 1
Query: 1 LAKVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNM 108
+ VNLP D+ HRGF FVEFE+ EDAKAAIDNM
Sbjct: 30 IVDVNLPLDYETEKHRGFAFVEFELAEDAKAAIDNM 65 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig67258.17625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig67258.17625.1 >prot_Ecto-sp13_S_contig67258.17625.1 ID=prot_Ecto-sp13_S_contig67258.17625.1|Name=mRNA_Ecto-sp13_S_contig67258.17625.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=40bp LAKVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNMDGEIback to top mRNA from alignment at Ecto-sp13_S_contig67258:593..712- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig67258.17625.1 ID=mRNA_Ecto-sp13_S_contig67258.17625.1|Name=mRNA_Ecto-sp13_S_contig67258.17625.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=120bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67258:593..712- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig67258:593..712- >mRNA_Ecto-sp13_S_contig67258.17625.1 ID=mRNA_Ecto-sp13_S_contig67258.17625.1|Name=mRNA_Ecto-sp13_S_contig67258.17625.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=120bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67258:593..712- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |