mRNA_Ecto-sp13_S_contig67258.17625.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig67258.17625.1
Unique NamemRNA_Ecto-sp13_S_contig67258.17625.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig67258.17625.1 vs. uniprot
Match: A0A6H5KWM4_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWM4_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 4.530e-16
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 1
Query:    1 LAKVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNMDG 114
            + +VNLPKDHVANTHRGFGFVEFE+EEDAKAAIDNMDG
Sbjct:   35 IVEVNLPKDHVANTHRGFGFVEFELEEDAKAAIDNMDG 72          
BLAST of mRNA_Ecto-sp13_S_contig67258.17625.1 vs. uniprot
Match: A0A059LPL0_9CHLO (RRM domain-containing protein n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LPL0_9CHLO)

HSP 1 Score: 51.6 bits (122), Expect = 4.310e-7
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 1
Query:   10 VNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNM 108
            V++P DH + THRGFGFVEFE+ EDA  A+DNM
Sbjct:   15 VSIPLDHASGTHRGFGFVEFELPEDAADAVDNM 47          
BLAST of mRNA_Ecto-sp13_S_contig67258.17625.1 vs. uniprot
Match: A0A061R9Z2_9CHLO (Peptidyl-prolyl cis-trans isomerase e-like n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R9Z2_9CHLO)

HSP 1 Score: 52.0 bits (123), Expect = 5.220e-7
Identity = 24/33 (72.73%), Postives = 26/33 (78.79%), Query Frame = 1
Query:   10 VNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNM 108
            VN+P DH A THRGFGFVEF   EDA +AIDNM
Sbjct:   46 VNIPLDHTAGTHRGFGFVEFLDSEDAASAIDNM 78          
BLAST of mRNA_Ecto-sp13_S_contig67258.17625.1 vs. uniprot
Match: A0A835Z2R3_9STRA (Peptidyl-prolyl cis-trans isomerase E n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2R3_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 6.760e-7
Identity = 22/38 (57.89%), Postives = 31/38 (81.58%), Query Frame = 1
Query:    1 LAKVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNMDG 114
            L +V +P++  + T+RGFGFVE+E EEDA AA++NMDG
Sbjct:   35 LVEVQIPREWKSGTNRGFGFVEYEAEEDASAAMENMDG 72          
BLAST of mRNA_Ecto-sp13_S_contig67258.17625.1 vs. uniprot
Match: Q0CYG8_ASPTN (RRM domain-containing protein n=2 Tax=Aspergillus terreus TaxID=33178 RepID=Q0CYG8_ASPTN)

HSP 1 Score: 50.8 bits (120), Expect = 8.880e-7
Identity = 25/38 (65.79%), Postives = 29/38 (76.32%), Query Frame = 1
Query:   10 VNLPKDHVANT---HRGFGFVEFEVEEDAKAAIDNMDG 114
            + LPK  V NT   HRGFG+VEF++ EDAK AIDNMDG
Sbjct:   17 ITLPKPDVPNTNEAHRGFGYVEFDLPEDAKEAIDNMDG 54          
BLAST of mRNA_Ecto-sp13_S_contig67258.17625.1 vs. uniprot
Match: A0A6U1IIJ7_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A6U1IIJ7_9CHLO)

HSP 1 Score: 51.2 bits (121), Expect = 9.300e-7
Identity = 24/33 (72.73%), Postives = 27/33 (81.82%), Query Frame = 1
Query:   10 VNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNM 108
            VN+P DH A THRGFGFVEF  ++DA AAIDNM
Sbjct:   46 VNVPLDHSAGTHRGFGFVEFIDKDDAAAAIDNM 78          
BLAST of mRNA_Ecto-sp13_S_contig67258.17625.1 vs. uniprot
Match: A0A7S1IR69_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IR69_9EUGL)

HSP 1 Score: 50.4 bits (119), Expect = 9.880e-7
Identity = 23/35 (65.71%), Postives = 29/35 (82.86%), Query Frame = 1
Query:   10 VNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNMDG 114
            VN+P D V   +RGFGFVEFE++EDA AAI+NM+G
Sbjct:   42 VNMPLDQVNQKNRGFGFVEFELQEDAAAAIENMNG 76          
BLAST of mRNA_Ecto-sp13_S_contig67258.17625.1 vs. uniprot
Match: A0A183J811_9BILA (RRM domain-containing protein n=1 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183J811_9BILA)

HSP 1 Score: 50.1 bits (118), Expect = 1.240e-6
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 1
Query:    1 LAKVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNM 108
            +  V++P D+ + +HRGFGFVEFE+E DA AAIDNM
Sbjct:   39 IVDVSIPLDYESQSHRGFGFVEFELEADAMAAIDNM 74          
BLAST of mRNA_Ecto-sp13_S_contig67258.17625.1 vs. uniprot
Match: A0A7S2V6A5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6A5_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.270e-6
Identity = 22/38 (57.89%), Postives = 31/38 (81.58%), Query Frame = 1
Query:    1 LAKVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNMDG 114
            + +VN+P+D   + +RGFGFV+FE E+DA AAI+NMDG
Sbjct:   40 IVEVNIPRDFQKDLNRGFGFVDFEDEKDASAAIENMDG 77          
BLAST of mRNA_Ecto-sp13_S_contig67258.17625.1 vs. uniprot
Match: H2Z0T3_CIOSA (Peptidyl-prolyl cis-trans isomerase E n=4 Tax=Ciona savignyi TaxID=51511 RepID=H2Z0T3_CIOSA)

HSP 1 Score: 51.6 bits (122), Expect = 1.820e-6
Identity = 24/36 (66.67%), Postives = 27/36 (75.00%), Query Frame = 1
Query:    1 LAKVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNM 108
            +  VNLP D+    HRGF FVEFE+ EDAKAAIDNM
Sbjct:   30 IVDVNLPLDYETEKHRGFAFVEFELAEDAKAAIDNM 65          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig67258.17625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWM4_9PHAE4.530e-1689.47RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A059LPL0_9CHLO4.310e-766.67RRM domain-containing protein n=1 Tax=Helicosporid... [more]
A0A061R9Z2_9CHLO5.220e-772.73Peptidyl-prolyl cis-trans isomerase e-like n=1 Tax... [more]
A0A835Z2R3_9STRA6.760e-757.89Peptidyl-prolyl cis-trans isomerase E n=1 Tax=Trib... [more]
Q0CYG8_ASPTN8.880e-765.79RRM domain-containing protein n=2 Tax=Aspergillus ... [more]
A0A6U1IIJ7_9CHLO9.300e-772.73Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A7S1IR69_9EUGL9.880e-765.71Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A183J811_9BILA1.240e-661.11RRM domain-containing protein n=1 Tax=Soboliphyme ... [more]
A0A7S2V6A5_9STRA1.270e-657.89Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
H2Z0T3_CIOSA1.820e-666.67Peptidyl-prolyl cis-trans isomerase E n=4 Tax=Cion... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig67258contigEcto-sp13_S_contig67258:593..712 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score76.3
Seed ortholog evalue3.7e-12
Seed eggNOG ortholog2880.D8LQE3
Model size120
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0111@2759
Cds size120
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463924.9064853-CDS-Ecto-sp13_S_contig67258:592..7121681463924.9064853-CDS-Ecto-sp13_S_contig67258:592..712Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig67258 593..712 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig67258.17625.1prot_Ecto-sp13_S_contig67258.17625.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig67258 593..712 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig67258.17625.1

>prot_Ecto-sp13_S_contig67258.17625.1 ID=prot_Ecto-sp13_S_contig67258.17625.1|Name=mRNA_Ecto-sp13_S_contig67258.17625.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=40bp
LAKVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNMDGEI
back to top

mRNA from alignment at Ecto-sp13_S_contig67258:593..712-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig67258.17625.1 ID=mRNA_Ecto-sp13_S_contig67258.17625.1|Name=mRNA_Ecto-sp13_S_contig67258.17625.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=120bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67258:593..712- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGGCGAAGGTCAATCTTCCAAAGGATCACGTGGCGAATACCCACCGAGG CTTCGGATTCGTCGAGTTCGAGGTGGAGGAGGACGCAAAAGCGGCAATAG ACAACATGGACGGTGAGATC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig67258:593..712-

>mRNA_Ecto-sp13_S_contig67258.17625.1 ID=mRNA_Ecto-sp13_S_contig67258.17625.1|Name=mRNA_Ecto-sp13_S_contig67258.17625.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=120bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67258:593..712- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGGCGAAGGTCAATCTTCCAAAGGATCACGTGGCGAATACCCACCGAGG
CTTCGGATTCGTCGAGTTCGAGGTGGAGGAGGACGCAAAAGCGGCAATAG
ACAACATGGACGGTGAGATC
back to top