mRNA_Ecto-sp13_S_contig67171.17614.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig67171.17614.1 vs. uniprot
Match: A0A6H5JAG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAG8_9PHAE) HSP 1 Score: 155 bits (391), Expect = 1.900e-47 Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 1
Query: 16 MVSRFMVMPLVAAMLLLSGAKAKLIPYDKLVWFVLLMEGCMPSAQNSVVILQMEKKPELASSMAKTLTAVYLLSAVPIAFLLSAILQF 279
MVSRFMVMPLVAAMLL SGAKAKLIPYDKLVWFVLLMEGCMPSAQNSVVILQMEKKPELASSMAKTLTAVYLLSAVPIAFLLSAILQF
Sbjct: 1 MVSRFMVMPLVAAMLLFSGAKAKLIPYDKLVWFVLLMEGCMPSAQNSVVILQMEKKPELASSMAKTLTAVYLLSAVPIAFLLSAILQF 88
BLAST of mRNA_Ecto-sp13_S_contig67171.17614.1 vs. uniprot
Match: A0A7S2SS74_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SS74_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 7.140e-19 Identity = 51/88 (57.95%), Postives = 68/88 (77.27%), Query Frame = 1
Query: 1 QIAAIMVSRFMVMPLVAAMLLLSGAKAKLIPYDKLVWFVLLMEGCMPSAQNSVVILQMEKKPELASSMAKTLTAVYLLSAVPIAFLLS 264
++AA+MV+RF++ P+ A +L + A LIP D L+ FVLLM+ CMPSAQNSVVILQ+E K E A SMAKTL+ +Y+L+ +PIA LLS
Sbjct: 360 RVAALMVARFLITPVTAYGMLRVCSHAGLIPADPLLRFVLLMQACMPSAQNSVVILQLENKKEAAGSMAKTLSVLYILACLPIALLLS 447
BLAST of mRNA_Ecto-sp13_S_contig67171.17614.1 vs. uniprot
Match: D8LM59_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM59_ECTSI) HSP 1 Score: 79.3 bits (194), Expect = 2.510e-17 Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 1
Query: 1 QIAAIMVSRFMVMPLVAAMLLLSGAKAKLIPYDKLVWFVLLMEG 132
+IAAIMVSRFMVMPLVAAMLLLSGAKAKLIPYDKLVWFVLLMEG
Sbjct: 58 KIAAIMVSRFMVMPLVAAMLLLSGAKAKLIPYDKLVWFVLLMEG 101
BLAST of mRNA_Ecto-sp13_S_contig67171.17614.1 vs. uniprot
Match: A0A0G4EKC6_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EKC6_VITBC) HSP 1 Score: 80.5 bits (197), Expect = 1.090e-15 Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = 1
Query: 22 SRFMVMPLVAAMLLLSGAKAKLIPYDKLVWFVLLMEGCMPSAQNSVVILQMEKKPELASSMAKTLTAVYLLSAVPIAFLLS 264
+RF+ P +A LL G + LI D +WFVLLM+GCMP+AQ SVVILQ+E +P+ A+ MAKTLT +Y L +P+A L+S
Sbjct: 403 ARFVCAPTIAFTLLTIGRRLGLIMNDPFLWFVLLMQGCMPAAQQSVVILQLENQPQAATVMAKTLTLLYSLGVIPVALLIS 483
BLAST of mRNA_Ecto-sp13_S_contig67171.17614.1 vs. uniprot
Match: R1CQU2_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CQU2_EMIHU) HSP 1 Score: 77.0 bits (188), Expect = 1.800e-14 Identity = 44/92 (47.83%), Postives = 66/92 (71.74%), Query Frame = 1
Query: 1 QIAAIMVSRFMVMPLVAAMLLLSGAKAKLIPYDKLVWFVLLMEGCMPSAQNSVVILQMEKKPELASSMAKTLTAVYLLSAVPIAFLLSAILQ 276
+ AI V+RF +PL++ LL + +A L+P D L VLL++ CMPSAQNSV+ LQ++ PE A+ MA+ L A+YL++A+P+A +LS +LQ
Sbjct: 371 HVVAIAVARFCAVPLLSFALLHAALRAGLLPADPLRDLVLLLQSCMPSAQNSVLALQVDGSPERAARMARVLLAIYLIAALPVAGILSLLLQ 462
BLAST of mRNA_Ecto-sp13_S_contig67171.17614.1 vs. uniprot
Match: A0A0G4EE60_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EE60_VITBC) HSP 1 Score: 76.3 bits (186), Expect = 2.150e-14 Identity = 44/92 (47.83%), Postives = 63/92 (68.48%), Query Frame = 1
Query: 1 QIAAIMVSRFMVMPLVAAMLLLSGAKAKLIPYDKLVWFVLLMEGCMPSAQNSVVILQMEKKPELASSMAKTLTAVYLLSAVPIAFLLSAILQ 276
Q+ A+ ++RF VMP + ++ + LI D ++ F+LL+EGCMP AQN+VVILQ + + E A SMA+TL A+Y LS VP+ FL+S IL
Sbjct: 235 QLPAVALARFGVMPAITFAVVRLAQRTSLIQADPVLMFLLLLEGCMPPAQNTVVILQKQGQREEAESMAQTLAAIYALSLVPLPFLISCILD 326
BLAST of mRNA_Ecto-sp13_S_contig67171.17614.1 vs. uniprot
Match: A0A4D9D5S5_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5S5_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 2.430e-14 Identity = 40/90 (44.44%), Postives = 66/90 (73.33%), Query Frame = 1
Query: 13 IMVSRFMVMPLVAAMLLLSGAKAKLIP-YDKLVWFVLLMEGCMPSAQNSVVILQMEKKPELASSMAKTLTAVYLLSAVPIAFLLSAILQF 279
+M RF +MP VA + +G + L+P D L+ FV+L++GCMPSAQNSV+ILQ+E++P+ A+S+A+ ++ VY+LS +P+ L+ +L +
Sbjct: 368 VMFQRFCIMPAVAFACVETGKRTGLLPTQDPLLLFVILLQGCMPSAQNSVLILQLERRPQAAASIARLISTVYILSILPVGMLIRTLLSY 457
BLAST of mRNA_Ecto-sp13_S_contig67171.17614.1 vs. uniprot
Match: A0A7S2V2A0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2A0_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 2.250e-13 Identity = 44/92 (47.83%), Postives = 61/92 (66.30%), Query Frame = 1
Query: 1 QIAAIMVSRFMVMPLVAAMLLLSGAKAKLIPYDKLVWFVLLMEGCMPSAQNSVVILQMEKKPELASSMAKTLTAVYLLSAVPIAFLLSAILQ 276
I+ I + RF++ PL+ A LL G L +D ++ FVL+M+ CMPSAQN+V+ILQ+E AS MA+ L +YL+S VPI+ LLS LQ
Sbjct: 54 NISVISLGRFVLTPLLTAGLLRLGINLGLSLHDPVLLFVLMMQSCMPSAQNNVLILQVEGLKHAASRMAQMLLIIYLISIVPISVLLSIFLQ 145
BLAST of mRNA_Ecto-sp13_S_contig67171.17614.1 vs. uniprot
Match: W7U1P2_9STRA (Membrane transporter n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1P2_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 3.010e-13 Identity = 45/91 (49.45%), Postives = 63/91 (69.23%), Query Frame = 1
Query: 10 AIMVSRFMVMPLVAAMLLLSGAKAKLIPY-DKLVWFVLLMEGCMPSAQNSVVILQMEKKPELASSMAKTLTAVYLLSAVPIAFLLSAILQF 279
AI +RF +MP A +LL G LIP D L+ FVLL++ CMP AQN+VVILQ++++P A+SMA ++ VYL + VP+ LLS +LQ+
Sbjct: 388 AICFARFFLMPATAFLLLTLGRAFSLIPSSDPLLAFVLLLQACMPCAQNTVVILQLQQRPAAAASMATLVSLVYLAAVVPMGLLLSFVLQY 478
BLAST of mRNA_Ecto-sp13_S_contig67171.17614.1 vs. uniprot
Match: A0A0G4FFE0_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FFE0_9ALVE) HSP 1 Score: 70.9 bits (172), Expect = 2.640e-12 Identity = 43/87 (49.43%), Postives = 60/87 (68.97%), Query Frame = 1
Query: 19 VSRFMVMPLVAAMLLLSGAKAKLIPYDKLVWFVLLMEGCMPSAQNSVVILQMEKKPELASSMAKTLTAVYLLSAVPIAFLLSAILQF 279
V RFM+ PL+ L+LS + L+ D L+ F+LL++G MPSAQ SVV+LQ+E K + A MAKTLT +Y L +P+AF++S QF
Sbjct: 366 VYRFMIAPLINLCLVLSLRRMGLLGEDPLLAFILLLQGVMPSAQQSVVMLQLEGKSDEAGRMAKTLTLLYSLGVLPMAFVISKAKQF 452 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig67171.17614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig67171.17614.1 >prot_Ecto-sp13_S_contig67171.17614.1 ID=prot_Ecto-sp13_S_contig67171.17614.1|Name=mRNA_Ecto-sp13_S_contig67171.17614.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=88bp MVSRFMVMPLVAAMLLLSGAKAKLIPYDKLVWFVLLMEGCMPSAQNSVVIback to top mRNA from alignment at Ecto-sp13_S_contig67171:11..643- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig67171.17614.1 ID=mRNA_Ecto-sp13_S_contig67171.17614.1|Name=mRNA_Ecto-sp13_S_contig67171.17614.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=633bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67171:11..643- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig67171:11..643- >mRNA_Ecto-sp13_S_contig67171.17614.1 ID=mRNA_Ecto-sp13_S_contig67171.17614.1|Name=mRNA_Ecto-sp13_S_contig67171.17614.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67171:11..643- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |