mRNA_Ecto-sp13_S_contig67171.17614.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig67171.17614.1
Unique NamemRNA_Ecto-sp13_S_contig67171.17614.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig67171.17614.1 vs. uniprot
Match: A0A6H5JAG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAG8_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 1.900e-47
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 1
Query:   16 MVSRFMVMPLVAAMLLLSGAKAKLIPYDKLVWFVLLMEGCMPSAQNSVVILQMEKKPELASSMAKTLTAVYLLSAVPIAFLLSAILQF 279
            MVSRFMVMPLVAAMLL SGAKAKLIPYDKLVWFVLLMEGCMPSAQNSVVILQMEKKPELASSMAKTLTAVYLLSAVPIAFLLSAILQF
Sbjct:    1 MVSRFMVMPLVAAMLLFSGAKAKLIPYDKLVWFVLLMEGCMPSAQNSVVILQMEKKPELASSMAKTLTAVYLLSAVPIAFLLSAILQF 88          
BLAST of mRNA_Ecto-sp13_S_contig67171.17614.1 vs. uniprot
Match: A0A7S2SS74_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SS74_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 7.140e-19
Identity = 51/88 (57.95%), Postives = 68/88 (77.27%), Query Frame = 1
Query:    1 QIAAIMVSRFMVMPLVAAMLLLSGAKAKLIPYDKLVWFVLLMEGCMPSAQNSVVILQMEKKPELASSMAKTLTAVYLLSAVPIAFLLS 264
            ++AA+MV+RF++ P+ A  +L   + A LIP D L+ FVLLM+ CMPSAQNSVVILQ+E K E A SMAKTL+ +Y+L+ +PIA LLS
Sbjct:  360 RVAALMVARFLITPVTAYGMLRVCSHAGLIPADPLLRFVLLMQACMPSAQNSVVILQLENKKEAAGSMAKTLSVLYILACLPIALLLS 447          
BLAST of mRNA_Ecto-sp13_S_contig67171.17614.1 vs. uniprot
Match: D8LM59_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM59_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 2.510e-17
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 1
Query:    1 QIAAIMVSRFMVMPLVAAMLLLSGAKAKLIPYDKLVWFVLLMEG 132
            +IAAIMVSRFMVMPLVAAMLLLSGAKAKLIPYDKLVWFVLLMEG
Sbjct:   58 KIAAIMVSRFMVMPLVAAMLLLSGAKAKLIPYDKLVWFVLLMEG 101          
BLAST of mRNA_Ecto-sp13_S_contig67171.17614.1 vs. uniprot
Match: A0A0G4EKC6_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EKC6_VITBC)

HSP 1 Score: 80.5 bits (197), Expect = 1.090e-15
Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = 1
Query:   22 SRFMVMPLVAAMLLLSGAKAKLIPYDKLVWFVLLMEGCMPSAQNSVVILQMEKKPELASSMAKTLTAVYLLSAVPIAFLLS 264
            +RF+  P +A  LL  G +  LI  D  +WFVLLM+GCMP+AQ SVVILQ+E +P+ A+ MAKTLT +Y L  +P+A L+S
Sbjct:  403 ARFVCAPTIAFTLLTIGRRLGLIMNDPFLWFVLLMQGCMPAAQQSVVILQLENQPQAATVMAKTLTLLYSLGVIPVALLIS 483          
BLAST of mRNA_Ecto-sp13_S_contig67171.17614.1 vs. uniprot
Match: R1CQU2_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CQU2_EMIHU)

HSP 1 Score: 77.0 bits (188), Expect = 1.800e-14
Identity = 44/92 (47.83%), Postives = 66/92 (71.74%), Query Frame = 1
Query:    1 QIAAIMVSRFMVMPLVAAMLLLSGAKAKLIPYDKLVWFVLLMEGCMPSAQNSVVILQMEKKPELASSMAKTLTAVYLLSAVPIAFLLSAILQ 276
             + AI V+RF  +PL++  LL +  +A L+P D L   VLL++ CMPSAQNSV+ LQ++  PE A+ MA+ L A+YL++A+P+A +LS +LQ
Sbjct:  371 HVVAIAVARFCAVPLLSFALLHAALRAGLLPADPLRDLVLLLQSCMPSAQNSVLALQVDGSPERAARMARVLLAIYLIAALPVAGILSLLLQ 462          
BLAST of mRNA_Ecto-sp13_S_contig67171.17614.1 vs. uniprot
Match: A0A0G4EE60_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EE60_VITBC)

HSP 1 Score: 76.3 bits (186), Expect = 2.150e-14
Identity = 44/92 (47.83%), Postives = 63/92 (68.48%), Query Frame = 1
Query:    1 QIAAIMVSRFMVMPLVAAMLLLSGAKAKLIPYDKLVWFVLLMEGCMPSAQNSVVILQMEKKPELASSMAKTLTAVYLLSAVPIAFLLSAILQ 276
            Q+ A+ ++RF VMP +   ++    +  LI  D ++ F+LL+EGCMP AQN+VVILQ + + E A SMA+TL A+Y LS VP+ FL+S IL 
Sbjct:  235 QLPAVALARFGVMPAITFAVVRLAQRTSLIQADPVLMFLLLLEGCMPPAQNTVVILQKQGQREEAESMAQTLAAIYALSLVPLPFLISCILD 326          
BLAST of mRNA_Ecto-sp13_S_contig67171.17614.1 vs. uniprot
Match: A0A4D9D5S5_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5S5_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.430e-14
Identity = 40/90 (44.44%), Postives = 66/90 (73.33%), Query Frame = 1
Query:   13 IMVSRFMVMPLVAAMLLLSGAKAKLIP-YDKLVWFVLLMEGCMPSAQNSVVILQMEKKPELASSMAKTLTAVYLLSAVPIAFLLSAILQF 279
            +M  RF +MP VA   + +G +  L+P  D L+ FV+L++GCMPSAQNSV+ILQ+E++P+ A+S+A+ ++ VY+LS +P+  L+  +L +
Sbjct:  368 VMFQRFCIMPAVAFACVETGKRTGLLPTQDPLLLFVILLQGCMPSAQNSVLILQLERRPQAAASIARLISTVYILSILPVGMLIRTLLSY 457          
BLAST of mRNA_Ecto-sp13_S_contig67171.17614.1 vs. uniprot
Match: A0A7S2V2A0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2A0_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.250e-13
Identity = 44/92 (47.83%), Postives = 61/92 (66.30%), Query Frame = 1
Query:    1 QIAAIMVSRFMVMPLVAAMLLLSGAKAKLIPYDKLVWFVLLMEGCMPSAQNSVVILQMEKKPELASSMAKTLTAVYLLSAVPIAFLLSAILQ 276
             I+ I + RF++ PL+ A LL  G    L  +D ++ FVL+M+ CMPSAQN+V+ILQ+E     AS MA+ L  +YL+S VPI+ LLS  LQ
Sbjct:   54 NISVISLGRFVLTPLLTAGLLRLGINLGLSLHDPVLLFVLMMQSCMPSAQNNVLILQVEGLKHAASRMAQMLLIIYLISIVPISVLLSIFLQ 145          
BLAST of mRNA_Ecto-sp13_S_contig67171.17614.1 vs. uniprot
Match: W7U1P2_9STRA (Membrane transporter n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1P2_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.010e-13
Identity = 45/91 (49.45%), Postives = 63/91 (69.23%), Query Frame = 1
Query:   10 AIMVSRFMVMPLVAAMLLLSGAKAKLIPY-DKLVWFVLLMEGCMPSAQNSVVILQMEKKPELASSMAKTLTAVYLLSAVPIAFLLSAILQF 279
            AI  +RF +MP  A +LL  G    LIP  D L+ FVLL++ CMP AQN+VVILQ++++P  A+SMA  ++ VYL + VP+  LLS +LQ+
Sbjct:  388 AICFARFFLMPATAFLLLTLGRAFSLIPSSDPLLAFVLLLQACMPCAQNTVVILQLQQRPAAAASMATLVSLVYLAAVVPMGLLLSFVLQY 478          
BLAST of mRNA_Ecto-sp13_S_contig67171.17614.1 vs. uniprot
Match: A0A0G4FFE0_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FFE0_9ALVE)

HSP 1 Score: 70.9 bits (172), Expect = 2.640e-12
Identity = 43/87 (49.43%), Postives = 60/87 (68.97%), Query Frame = 1
Query:   19 VSRFMVMPLVAAMLLLSGAKAKLIPYDKLVWFVLLMEGCMPSAQNSVVILQMEKKPELASSMAKTLTAVYLLSAVPIAFLLSAILQF 279
            V RFM+ PL+   L+LS  +  L+  D L+ F+LL++G MPSAQ SVV+LQ+E K + A  MAKTLT +Y L  +P+AF++S   QF
Sbjct:  366 VYRFMIAPLINLCLVLSLRRMGLLGEDPLLAFILLLQGVMPSAQQSVVMLQLEGKSDEAGRMAKTLTLLYSLGVLPMAFVISKAKQF 452          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig67171.17614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAG8_9PHAE1.900e-4798.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2SS74_9STRA7.140e-1957.95Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D8LM59_ECTSI2.510e-1797.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0G4EKC6_VITBC1.090e-1553.09Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
R1CQU2_EMIHU1.800e-1447.83Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A0G4EE60_VITBC2.150e-1447.83Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A4D9D5S5_9STRA2.430e-1444.44Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2V2A0_9STRA2.250e-1347.83Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
W7U1P2_9STRA3.010e-1349.45Membrane transporter n=3 Tax=Monodopsidaceae TaxID... [more]
A0A0G4FFE0_9ALVE2.640e-1249.43Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig67171contigEcto-sp13_S_contig67171:11..643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score72.0
Seed ortholog evalue1.5e-10
Seed eggNOG ortholog2903.EOD04670
Model size279
KEGG koko:K07088
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG free text desc.auxin efflux carrier
EggNOG OGsCOG0679@1,KOG2722@2759
Cds size264
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463923.664935-CDS-Ecto-sp13_S_contig67171:10..1581681463923.664935-CDS-Ecto-sp13_S_contig67171:10..158Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig67171 11..158 -
1681463923.685104-CDS-Ecto-sp13_S_contig67171:512..6281681463923.685104-CDS-Ecto-sp13_S_contig67171:512..628Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig67171 513..628 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463923.6958685-UTR-Ecto-sp13_S_contig67171:628..6431681463923.6958685-UTR-Ecto-sp13_S_contig67171:628..643Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig67171 629..643 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig67171.17614.1prot_Ecto-sp13_S_contig67171.17614.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig67171 11..628 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig67171.17614.1

>prot_Ecto-sp13_S_contig67171.17614.1 ID=prot_Ecto-sp13_S_contig67171.17614.1|Name=mRNA_Ecto-sp13_S_contig67171.17614.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=88bp
MVSRFMVMPLVAAMLLLSGAKAKLIPYDKLVWFVLLMEGCMPSAQNSVVI
LQMEKKPELASSMAKTLTAVYLLSAVPIAFLLSAILQF
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mRNA from alignment at Ecto-sp13_S_contig67171:11..643-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig67171.17614.1 ID=mRNA_Ecto-sp13_S_contig67171.17614.1|Name=mRNA_Ecto-sp13_S_contig67171.17614.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=633bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67171:11..643- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATCGCGGCCATCATGGTGTCGAGGTTCATGGTCATGCCACTGGTCGC GGCTATGCTTCTCCTTTCTGGCGCCAAGGCAAAGCTGATCCCGTACGACA AGCTGGTCTGGTTCGTCCTCCTCATGGAAGGGTGAGATCGAGAAAACAAA AAACAAGGGTATCTGTTTCTTGTAAACGATTGGTTGTATGCAAGTATTGT TGGATGCAGGTTTTTGTGAGAGGAGTCCCCACTAACGAAGTATCCACGCC CGAGGCTGTGCCTGTGTCCGTATGTTGCTATCCCCACTAACTCCGCTGCT TGTTGCGAAAGCATCATGCCCGAGAGTCGACTTGTGTCCATACGTTGCGA TTTCCTCTAACGCCGCTGCCTGCTGCGGAATCATCACGCCGGAGGCTCTT CTTGTGTCTACATGTGCTATCCCCACTAACTCTGGTGCCCCTCCTCATCC CCCCCCTCCCCCTCCCTCTTTCGGAATTTTTTCAGGTGCATGCCGTCGGC GCAGAACAGCGTGGTGATCCTGCAGATGGAGAAGAAGCCGGAGCTGGCCT CTTCGATGGCGAAGACCCTGACGGCGGTGTATCTCCTTTCGGCGGTGCCC ATCGCCTTCCTGCTCTCCGCCATCCTACAGTTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig67171:11..643-

>mRNA_Ecto-sp13_S_contig67171.17614.1 ID=mRNA_Ecto-sp13_S_contig67171.17614.1|Name=mRNA_Ecto-sp13_S_contig67171.17614.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67171:11..643- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGTCGAGGTTCATGGTCATGCCACTGGTCGCGGCTATGCTTCTCCT
TTCTGGCGCCAAGGCAAAGCTGATCCCGTACGACAAGCTGGTCTGGTTCG
TCCTCCTCATGGAAGGGTGCATGCCGTCGGCGCAGAACAGCGTGGTGATC
CTGCAGATGGAGAAGAAGCCGGAGCTGGCCTCTTCGATGGCGAAGACCCT
GACGGCGGTGTATCTCCTTTCGGCGGTGCCCATCGCCTTCCTGCTCTCCG
CCATCCTACAGTTC
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