mRNA_Ecto-sp13_S_contig6716.17611.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6716.17611.1
Unique NamemRNA_Ecto-sp13_S_contig6716.17611.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6716.17611.1 vs. uniprot
Match: D8LM22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM22_ECTSI)

HSP 1 Score: 430 bits (1106), Expect = 8.040e-139
Identity = 282/363 (77.69%), Postives = 295/363 (81.27%), Query Frame = 1 
Query:    1 LRCQLEAIYMRFAPHKLGKVDRLLAKYAGNENKLLRIVRRKYVDAGESENTSEIQQNATSAAAASGVAEGPGSIPVSSGDGEVNGQQAVVHQPPPSASSPTRVDTAPVHGGETVPLGEATRNGHRSRQALVKSKANSTEGQTSAWEERVGDGTKPKNGDVHSKTFTPDARILDPPRDPGGGGPGKEEGPAPASSSSSWAVQHDSEHDPEALARETEILEGWERLHPPPEAPAPTRAPVEEDYLVGPRKPSPPAAXXXXXXXXXXXXXXXXXXTVNVDAGQEESMNGGDGLGXXXXXXIRNACSXXXXXXXXXXXXXXXXPAATVESMIQRAFEDDRKMTLRLKCPLQQQRGGAMDPQACSRRP 1089
            +R +LEAIYMRFAPHKLGKVDRLL KYAG+ENKLLRIVRRKYVD G                        PGSIPVSSGD EV+GQQAV HQPPP ASSPT+ DTAPVHGGET+PLGEA R+GHRSRQALVKSKANSTEGQTSAWEER+ DGTKPK+GDVHS+T  PDARILDPPRDPGGGGPGKEEGPAPASSSSSWAVQHDSEHDPEALARETEILEGWERLHPPPEAPAPTRAPVEED +VGPRKPSP   XXXXXXXXXXXXXXXXXX                   XXXXXX      XXXXXXXXXXXXXXXXPAATVESMIQRAFEDDRKMTLRLKCPLQQQRGGAMD Q  ++ P
Sbjct:  623 IRRKLEAIYMRFAPHKLGKVDRLLVKYAGDENKLLRIVRRKYVDTG------------------------PGSIPVSSGDSEVSGQQAVDHQPPPWASSPTQADTAPVHGGETIPLGEAARDGHRSRQALVKSKANSTEGQTSAWEERLVDGTKPKHGDVHSETCPPDARILDPPRDPGGGGPGKEEGPAPASSSSSWAVQHDSEHDPEALARETEILEGWERLHPPPEAPAPTRAPVEEDCVVGPRKPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAATVESMIQRAFEDDRKMTLRLKCPLQQQRGGAMDAQITTKLP 961
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BLAST of mRNA_Ecto-sp13_S_contig6716.17611.1 vs. uniprot
Match: A0A6H5KPS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPS6_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 6.040e-57
Identity = 118/155 (76.13%), Postives = 127/155 (81.94%), Query Frame = 1 
Query:    1 LRCQLEAIYMRFAPHKLGKVDRLLAKYAGNENKLLRIVRRKYVDAGESENTSEI------QQNATSAAAAS--------GVAEGPGSIPVSSGDGEVNGQQAVVHQPPPSASSPTRVDTAPVHGGETVPLGEATRNGHRSRQALVKSKANSTEGQ 423
            +R +LEAIYMRFAPHKLGKVDRLLAKYAG+ENKLLRIVRRKYVD G       +      +++ATSAA           GVAEG GSIPVSSGDGEVNGQQAV HQPPPS+SSPTRVDTAPVHGGET+PLGEATRNGHRSRQALVKSKANSTEGQ
Sbjct:  589 IRRKLEAIYMRFAPHKLGKVDRLLAKYAGDENKLLRIVRRKYVDTGRMRLLQSLLVYIEGRKDATSAAXXXXXXXXXXXGVAEGQGSIPVSSGDGEVNGQQAVDHQPPPSSSSPTRVDTAPVHGGETIPLGEATRNGHRSRQALVKSKANSTEGQ 743
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BLAST of mRNA_Ecto-sp13_S_contig6716.17611.1 vs. uniprot
Match: A0A6H5KQV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV9_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 3.360e-53
Identity = 135/157 (85.99%), Postives = 142/157 (90.45%), Query Frame = 1 
Query:  598 VQHDSEHDPEALARETEILEGWERLHPPPEAPAPTRAPVEEDYLVGPRKPSPPAAXXXXXXXXXXXXXXXXXXTVNVDAGQEESMNGGDGLGXXXXXXIRNACSXXXXXXXXXXXXXXXXPAATVESMIQRAFEDDRKMTLRLKCPLQQQRGGAMDP 1068
            ++HDSEHDPEALARETEILEGWERLHPPP+APAPTRAPVE+DY+VGPRKPSP   XXXXXX  XXXXXXXX  TVN DAGQEES+NGGDG GXXXXXX      XXXXXXXXXXXXXXXXPAATVESMIQRAFEDDR+MTLRLKCPLQQQRGGAMDP
Sbjct:    1 MRHDSEHDPEALARETEILEGWERLHPPPQAPAPTRAPVEDDYVVGPRKPSPXXXXXXXXXDGXXXXXXXXSSTVNDDAGQEESINGGDGFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAATVESMIQRAFEDDRRMTLRLKCPLQQQRGGAMDP 157
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6716.17611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LM22_ECTSI8.040e-13977.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPS6_9PHAE6.040e-5776.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQV9_9PHAE3.360e-5385.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6716contigEcto-sp13_S_contig6716:1009..3873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score429.1
Seed ortholog evalue2e-117
Seed eggNOG ortholog2880.D8LM22
Model size1095
KEGG koko:K16582
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.positive regulation of cilium movement
EggNOG OGsKOG2158@1,KOG2158@2759
Ec32 ortholog descriptionTubulin-tyrosine ligase/Tubulin polyglutamylase
Ec32 orthologEc-14_002580.1
Cds size1068
COG Functional cat.KT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6716.17611.1prot_Ecto-sp13_S_contig6716.17611.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6716 1036..3873 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463923.3934772-UTR-Ecto-sp13_S_contig6716:1008..10351681463923.3934772-UTR-Ecto-sp13_S_contig6716:1008..1035Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6716 1009..1035 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463923.4033287-CDS-Ecto-sp13_S_contig6716:1035..11631681463923.4033287-CDS-Ecto-sp13_S_contig6716:1035..1163Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6716 1036..1163 +
1681463923.4120824-CDS-Ecto-sp13_S_contig6716:1236..12471681463923.4120824-CDS-Ecto-sp13_S_contig6716:1236..1247Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6716 1237..1247 +
1681463923.422184-CDS-Ecto-sp13_S_contig6716:1342..15991681463923.422184-CDS-Ecto-sp13_S_contig6716:1342..1599Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6716 1343..1599 +
1681463923.4347544-CDS-Ecto-sp13_S_contig6716:2058..22381681463923.4347544-CDS-Ecto-sp13_S_contig6716:2058..2238Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6716 2059..2238 +
1681463923.4480784-CDS-Ecto-sp13_S_contig6716:2698..30811681463923.4480784-CDS-Ecto-sp13_S_contig6716:2698..3081Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6716 2699..3081 +
1681463923.4676757-CDS-Ecto-sp13_S_contig6716:3764..38731681463923.4676757-CDS-Ecto-sp13_S_contig6716:3764..3873Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6716 3765..3873 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6716.17611.1

>prot_Ecto-sp13_S_contig6716.17611.1 ID=prot_Ecto-sp13_S_contig6716.17611.1|Name=mRNA_Ecto-sp13_S_contig6716.17611.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=356bp
MRFAPHKLGKVDRLLAKYAGNENKLLRIVRRKYVDAGESENTSEIQQNAT
SAAAASGVAEGPGSIPVSSGDGEVNGQQAVVHQPPPSASSPTRVDTAPVH
GGETVPLGEATRNGHRSRQALVKSKANSTEGQTSAWEERVGDGTKPKNGD
VHSKTFTPDARILDPPRDPGGGGPGKEEGPAPASSSSSWAVQHDSEHDPE
ALARETEILEGWERLHPPPEAPAPTRAPVEEDYLVGPRKPSPPAAAAAKS
NDGNGDGDGDGSSTVNVDAGQEESMNGGDGLGGGGGGGIRNACSGGGKGG
SAKGGRRRRKPAATVESMIQRAFEDDRKMTLRLKCPLQQQRGGAMDPQAC
SRRPR*
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mRNA from alignment at Ecto-sp13_S_contig6716:1009..3873+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6716.17611.1 ID=mRNA_Ecto-sp13_S_contig6716.17611.1|Name=mRNA_Ecto-sp13_S_contig6716.17611.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2865bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6716:1009..3873+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGAGGTGTCAGTTGGAGGCGATATACATGCGGTTCGCGCCGCACAAGCT
CGGTAAGGTGGACCGCTTGCTGGCTAAATATGCCGGGAACGAGAACAAGC
TGCTGCGGATTGTTCGGCGAAAGTACGTCGACGCAGGCGAGAGCGAAAAT
ACATCGTACACATTTTGAGGCACAACGCTCTTCTTTTCGTGGAATAATAG
TGCTAGCTTTGCGTGGATAAACATTTAGGGAGATCCAGCGTCTAATCAAT
GCACGCGCAGAGCGATGCACGCACAGAGATGTGAAGGGCGCATGTGTTTG
CAACAATCTCTCCCTGTTTACATCGAAGGGCGAGAGAATGCTACGTCTGC
TGCCGCTGCGTCTGGGGTTGCTGAAGGGCCGGGATCGATTCCGGTCTCGT
CTGGCGATGGCGAAGTCAACGGGCAGCAAGCTGTTGTCCATCAACCCCCG
CCATCGGCATCGTCACCGACACGGGTTGACACAGCACCGGTCCATGGGGG
CGAGACCGTTCCTCTCGGGGAAGCCACACGAAACGGGCACCGATCTCGCC
AAGCGCTCGTCAAGTCGAAGGCGAACTCAACGGAAGGACAGGTGCGTTGT
GTTTGTTCCACATGGGAGGGACGGTGCGAGAGGGAAGAGAGGGTGGACAT
TCAAACGCTGTTAGCAGTTGGGCGGTCTAATCGAAGCGCCGCTTTTTTTT
ACCTTGTTTCACTATCTATCGCCTCGGTTGGCTCTCTTCTTCGTCAAGCT
TTACTTTTGTTACGGGAGGAGAGCAAGCGCTCGCGCGCGGGGGGAAAGTC
TCTATGCCGAAGCGCCTCACGTTCCACACTCACCCCCCATCTATTCTAGC
ATGATGTGCTTCCCCTCAACTGGTACACACACTCATTTTCGGAGTCCTTC
AAGGCTGCGCTTTCGCGCCTGGGCCTTGATTGAAGCGTAAGCACCGACAC
CCTTTGAGAACCGCGAATTTCAGTCGAGAACCAACCATCAACACAGCAGG
CTCCCCTACCCCTACTTGGGTGTGCTGCTGCTGCGCTATGCACCCCTCAG
ACATCCGCGTGGGAGGAGCGTGTGGGTGATGGCACCAAGCCCAAGAACGG
AGATGTCCACTCCAAGACCTTCACCCCTGATGCTCGGATACTTGACCCGC
CCAGGGATCCGGGGGGGGGGGGTCCTGGAAAAGAGGAGGGGCCCGCCCCT
GCATCGTCTTCGTCTTCTTGGGCGGTACAGGTGGGCACATCGGCGGCGCG
AGGGAGGTATGGTTGTGGCAACTTCAACGAGGCTGACATGCATAGAATGC
TCTACAATGACGGTGTCCCGACCTTGGAAGTATTTTTGGTGACTCCGTGT
TTTGATGCGCGTGCGTCTATCACCCCCTTTCCATATTCCAATCAGCGTGC
CCCGTCCCCTCGCCCCCCCCCGCCGACGCTTGGAAACCGTTTAGCTCCAA
CGCAAGTCATACGTGAATCTCGTTTCTCCTCTTTGCCACCAAACTTTGCT
CTTTCCATGCGTACTCTTCACAGCAGCAAGCAGTAGCAACACCCACATGT
TTTGGTTTAGTCAACCGCCCATCCTGCTGTACATTTTACACCCCGCCGGA
AGGGACGCACTCCGCCTCTCTAAAGCTGGACCGAGCTCACGGTACCGCAC
CCCACCCCCGATTCACGCCTCTCCCCGCTTGGCATAACAGCACGATTCGG
AGCACGATCCGGAAGCTCTTGCGAGGGAGACCGAGATCCTGGAAGGCTGG
GAACGTTTGCACCCTCCTCCGGAAGCACCGGCACCAACACGAGCACCAGT
AGAAGAAGACTATCTTGTTGGGCCGAGGAAGCCTTCCCCGCCGGCGGCGG
CGGCAGCAAAGAGCAACGACGGCAACGGCGACGGCGACGGCGACGGCAGT
AGCACCGTCAATGTCGACGCCGGGCAGGAGGAGAGCATGAACGGGGGAGA
CGGTCTCGGTGGCGGCGGTGGCGGCGGAATCAGAAACGCCTGCAGTGGTG
GCGGCAAGGGAGGTTCGGCAAAAGGCGGGCGGAGAAGAAGAAAGCCCGCA
GCTACCGTGGAGTCGATGATCCAGTGAGTTCGAGTCCGAGACTAGAGGTT
GACGCAGGGGGCTCGGCTTGCCCTACCCAAGTCCAGGCCTTGGCCCGGGC
CGTTGTCGAGTAGGAGAGAGGTTATTGGTCTTCGGCCTAGGGGAGTAGGA
CTTGTGACATAGTAGAGAAGCTGCTGTGACCAGGGCTGTTTGTACAACGT
CGTCGGGTGCATCGCTGTAGCTTGCCAAGGGTCCCCGACAAGGATCACGT
GTCTTTGACTTCGAGGTACGGTAGGGTTCTATATCTCTTCCCTCATGCTT
CCACGATCCCGCTGGAGCATTTCTTGGAGCGTGGAGTTCGTGACAAGAAC
ACTTCTCAAGAACGGTTCAAAACGAAACGTCAGGCAGCTGTACTTTAGAA
CGCCGACCCCGGAACGAGCACCGGGGGACGGAACAGCAGCGGGGGGCTTG
TCAATATTGCACACACGAGACATGGGCGGGGCATCGCTCATGGCTATTGC
TTGATCACACGGCGACGTATTGACGTGGTTGGCTCCTTAACGCCAAAAGC
GACCAAGACGGAAACAGGTATCTGCATCTCCTCAACGCCGTCTATACAGT
CCGTCTCTCGCAGTATTACTGTTTCCCCCTCGACAACCAACGGGCACCTC
GCATTGAGCTGACGCTGCTTTACCTACCCTGGCCCCTACCCCAACCTAAA
ACCAAGGCGGGCCTTCGAAGACGATCGAAAGATGACCCTCCGGCTCAAGT
GCCCGTTACAACAGCAACGAGGAGGTGCAATGGACCCACAGGCATGTTCT
CGTCGCCCCCGCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6716:1009..3873+

>mRNA_Ecto-sp13_S_contig6716.17611.1 ID=mRNA_Ecto-sp13_S_contig6716.17611.1|Name=mRNA_Ecto-sp13_S_contig6716.17611.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1068bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6716:1009..3873+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGTTCGCGCCGCACAAGCTCGGTAAGGTGGACCGCTTGCTGGCTAA
ATATGCCGGGAACGAGAACAAGCTGCTGCGGATTGTTCGGCGAAAGTACG
TCGACGCAGGCGAGAGCGAAAATACATCGGAGATCCAGCAGAATGCTACG
TCTGCTGCCGCTGCGTCTGGGGTTGCTGAAGGGCCGGGATCGATTCCGGT
CTCGTCTGGCGATGGCGAAGTCAACGGGCAGCAAGCTGTTGTCCATCAAC
CCCCGCCATCGGCATCGTCACCGACACGGGTTGACACAGCACCGGTCCAT
GGGGGCGAGACCGTTCCTCTCGGGGAAGCCACACGAAACGGGCACCGATC
TCGCCAAGCGCTCGTCAAGTCGAAGGCGAACTCAACGGAAGGACAGACAT
CCGCGTGGGAGGAGCGTGTGGGTGATGGCACCAAGCCCAAGAACGGAGAT
GTCCACTCCAAGACCTTCACCCCTGATGCTCGGATACTTGACCCGCCCAG
GGATCCGGGGGGGGGGGGTCCTGGAAAAGAGGAGGGGCCCGCCCCTGCAT
CGTCTTCGTCTTCTTGGGCGGTACAGCACGATTCGGAGCACGATCCGGAA
GCTCTTGCGAGGGAGACCGAGATCCTGGAAGGCTGGGAACGTTTGCACCC
TCCTCCGGAAGCACCGGCACCAACACGAGCACCAGTAGAAGAAGACTATC
TTGTTGGGCCGAGGAAGCCTTCCCCGCCGGCGGCGGCGGCAGCAAAGAGC
AACGACGGCAACGGCGACGGCGACGGCGACGGCAGTAGCACCGTCAATGT
CGACGCCGGGCAGGAGGAGAGCATGAACGGGGGAGACGGTCTCGGTGGCG
GCGGTGGCGGCGGAATCAGAAACGCCTGCAGTGGTGGCGGCAAGGGAGGT
TCGGCAAAAGGCGGGCGGAGAAGAAGAAAGCCCGCAGCTACCGTGGAGTC
GATGATCCAGCGGGCCTTCGAAGACGATCGAAAGATGACCCTCCGGCTCA
AGTGCCCGTTACAACAGCAACGAGGAGGTGCAATGGACCCACAGGCATGT
TCTCGTCGCCCCCGCTAG
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