mRNA_Ecto-sp13_S_contig67152.17610.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig67152.17610.1
Unique NamemRNA_Ecto-sp13_S_contig67152.17610.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig67152.17610.1 vs. uniprot
Match: A0A6H5KEM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEM1_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 2.670e-33
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1
Query:   13 GTHTDTTFLTVIPCASAPGLEIIQPSTGRWVRPEASRDCRPGSDVMLLAGELLQVFGRGRY 195
            GTHTDTTFLTVIPCASAPGLEIIQPSTGRWVRPEASRDCRPGSDVMLLAGELLQVFGRGRY
Sbjct:  158 GTHTDTTFLTVIPCASAPGLEIIQPSTGRWVRPEASRDCRPGSDVMLLAGELLQVFGRGRY 218          
BLAST of mRNA_Ecto-sp13_S_contig67152.17610.1 vs. uniprot
Match: D7FP64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP64_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 4.360e-33
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1
Query:   13 GTHTDTTFLTVIPCASAPGLEIIQPSTGRWVRPEASRDCRPGSDVMLLAGELLQVFGRGRY 195
            GTHTDTTFLTVIPCASAPGLEIIQPSTGRWVRPEASRDCRPGSDVMLLAGELLQVFGRGRY
Sbjct:  307 GTHTDTTFLTVIPCASAPGLEIIQPSTGRWVRPEASRDCRPGSDVMLLAGELLQVFGRGRY 367          
BLAST of mRNA_Ecto-sp13_S_contig67152.17610.1 vs. uniprot
Match: A0A7S4D4K1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4K1_HETAK)

HSP 1 Score: 79.7 bits (195), Expect = 2.410e-17
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 1
Query:   13 GTHTDTTFLTVIPCASAPGLEIIQPSTGRWVRPEASRDCRPGSDVMLLAGELLQVFGRGRY 195
            G HTDTTF+T+IPC++ PGLE+  P+   WVRPE +  CRPG D+++L GELLQV   G Y
Sbjct:    9 GAHTDTTFVTLIPCSNIPGLEVFSPALDGWVRPEPA--CRPGRDIIILPGELLQVLSAGHY 67          
BLAST of mRNA_Ecto-sp13_S_contig67152.17610.1 vs. uniprot
Match: A0A7S3NIL1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIL1_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.260e-13
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 1
Query:   13 GTHTDTTFLTVIPCASAPGLEIIQPSTGRWVRPEASRDCRPGSDVMLLAGELLQVFGRGRY 195
            G+HTDTTFLT++PCAS PGLE+  PS G ++  EAS    PG DV+ LAGE L +   G+Y
Sbjct:  198 GSHTDTTFLTLVPCASQPGLEVFDPSIGAFLCHEASPLACPGRDVICLAGEFLDLLSNGKY 258          
BLAST of mRNA_Ecto-sp13_S_contig67152.17610.1 vs. uniprot
Match: L1JA75_GUITC (2OG-FeII_Oxy domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JA75_GUITC)

HSP 1 Score: 63.2 bits (152), Expect = 4.560e-10
Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 1
Query:   19 HTDTTFLTVIPCASAPGLEIIQPSTGRWVRPEASRDCRPGSDVMLLAGELLQVFGRGRY 195
            HTDTTF+TVIPC+  PGLE++ P  G W++PE+S        V+++ GE+LQV   G++
Sbjct:  282 HTDTTFVTVIPCSKIPGLEVLSPEEG-WIQPESSSGVDQTCSVIVMPGEMLQVLTGGQF 339          
BLAST of mRNA_Ecto-sp13_S_contig67152.17610.1 vs. uniprot
Match: F0YH17_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YH17_AURAN)

HSP 1 Score: 60.8 bits (146), Expect = 3.080e-9
Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 1
Query:   13 GTHTDTTFLTVIPCASAPGLEIIQPSTGRWVRPEASRDCRPGSDVMLLAGELLQVFGRGRY 195
            G HTDT+F T++P +S PGLE+  PS   WVRPEA+      +DV+ + GE L++   G +
Sbjct: 1471 GAHTDTSFFTLVPLSSPPGLEVFDPSLDAWVRPEAAEGAE-ATDVLCMPGEFLELASAGAF 1530          
BLAST of mRNA_Ecto-sp13_S_contig67152.17610.1 vs. uniprot
Match: A0A1Z5J8Q8_FISSO (2OG-FeII_Oxy domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J8Q8_FISSO)

HSP 1 Score: 56.2 bits (134), Expect = 1.290e-7
Identity = 30/65 (46.15%), Postives = 40/65 (61.54%), Query Frame = 1
Query:    1 RPLAGTHTDTTFLTVIPCASAPGLEIIQPSTGRWVRPEA---SRDCRPGSDVMLLAGELLQVFGR 186
            R + G HTD+TF+T +P A+ PGLE+   +  RW RPEA   S  CR    V+L+ GE LQ+  R
Sbjct:  493 REVFGAHTDSTFITAVPVATVPGLEVYDEAAERWYRPEALLTSSHCRY---VVLVPGEFLQLLTR 554          
BLAST of mRNA_Ecto-sp13_S_contig67152.17610.1 vs. uniprot
Match: A0A7S2G6D7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G6D7_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.780e-7
Identity = 29/64 (45.31%), Postives = 42/64 (65.62%), Query Frame = 1
Query:   13 GTHTDTTFLTVIPCASA---PGLEIIQPSTGRWVRPEASRDCRPGSDVMLLAGELLQVFGRGRY 195
            G+HTD+TF TVIP AS+   PG+++   S G+W+ PE +  C   +DV+++ GE LQV   G Y
Sbjct:   90 GSHTDSTFFTVIPVASSVLQPGVQVF--SQGQWLCPETN--CDAETDVLIMTGEFLQVLSNGVY 149          
BLAST of mRNA_Ecto-sp13_S_contig67152.17610.1 vs. uniprot
Match: A0A7R9UA21_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UA21_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 4.340e-5
Identity = 20/34 (58.82%), Postives = 25/34 (73.53%), Query Frame = 1
Query:   13 GTHTDTTFLTVIPCASAPGLEIIQPSTGRWVRPE 114
            GTHTDT+F+TVIP    PG+E+  PS   W+RPE
Sbjct:  225 GTHTDTSFVTVIPFTETPGIEVYDPSLDAWMRPE 258          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig67152.17610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KEM1_9PHAE2.670e-33100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FP64_ECTSI4.360e-33100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4D4K1_HETAK2.410e-1757.38Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3NIL1_9STRA1.260e-1355.74Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
L1JA75_GUITC4.560e-1047.462OG-FeII_Oxy domain-containing protein n=2 Tax=Gui... [more]
F0YH17_AURAN3.080e-944.26Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A1Z5J8Q8_FISSO1.290e-746.152OG-FeII_Oxy domain-containing protein n=2 Tax=Fis... [more]
A0A7S2G6D7_9STRA2.780e-745.31Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9UA21_9STRA4.340e-558.82Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig67152contigEcto-sp13_S_contig67152:2..196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score130.2
Seed ortholog evalue3.5e-28
Seed eggNOG ortholog2880.D7FP64
Model size195
KEGG rclassRC00478
KEGG koko:K00472
KEGG ReactionR01252
KEGG Pathwayko00330,ko01100,map00330,map01100
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.procollagen-proline 4-dioxygenase activity
EggNOG OGsKOG1591@1,KOG1591@2759
EC1.14.11.2
Cds size195
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463923.3552136-CDS-Ecto-sp13_S_contig67152:1..1961681463923.3552136-CDS-Ecto-sp13_S_contig67152:1..196Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig67152 2..196 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig67152.17610.1prot_Ecto-sp13_S_contig67152.17610.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig67152 2..196 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig67152.17610.1

>prot_Ecto-sp13_S_contig67152.17610.1 ID=prot_Ecto-sp13_S_contig67152.17610.1|Name=mRNA_Ecto-sp13_S_contig67152.17610.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=65bp
RPLAGTHTDTTFLTVIPCASAPGLEIIQPSTGRWVRPEASRDCRPGSDVM
LLAGELLQVFGRGRY
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mRNA from alignment at Ecto-sp13_S_contig67152:2..196-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig67152.17610.1 ID=mRNA_Ecto-sp13_S_contig67152.17610.1|Name=mRNA_Ecto-sp13_S_contig67152.17610.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67152:2..196- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCCTCTCGCAGGCACCCACACAGACACAACCTTCCTGACCGTGATCCC GTGCGCTTCAGCCCCGGGGCTAGAGATCATCCAGCCATCGACAGGTCGCT GGGTGCGGCCGGAAGCATCACGGGACTGTCGGCCCGGCTCTGACGTCATG CTGCTCGCCGGAGAGCTGCTGCAGGTGTTCGGGAGAGGCCGGTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig67152:2..196-

>mRNA_Ecto-sp13_S_contig67152.17610.1 ID=mRNA_Ecto-sp13_S_contig67152.17610.1|Name=mRNA_Ecto-sp13_S_contig67152.17610.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67152:2..196- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCCTCTCGCAGGCACCCACACAGACACAACCTTCCTGACCGTGATCCC
GTGCGCTTCAGCCCCGGGGCTAGAGATCATCCAGCCATCGACAGGTCGCT
GGGTGCGGCCGGAAGCATCACGGGACTGTCGGCCCGGCTCTGACGTCATG
CTGCTCGCCGGAGAGCTGCTGCAGGTGTTCGGGAGAGGCCGGTAC
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