mRNA_Ecto-sp13_S_contig6712.17607.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6712.17607.1
Unique NamemRNA_Ecto-sp13_S_contig6712.17607.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6712.17607.1 vs. uniprot
Match: D8LFS0_ECTSI (Defective in cullin neddylation protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFS0_ECTSI)

HSP 1 Score: 452 bits (1163), Expect = 1.420e-159
Identity = 232/254 (91.34%), Postives = 238/254 (93.70%), Query Frame = 1
Query:    1 VRAMPTMRDLSASRRASVNELCSFVGATEVESIALLGKFNWNVAEAADAFFSGDVDIAQLVAASMPMPPAPPAVDQHKLDAWFDRYSDADEKDSILDDGIQQFYTELG----DPVVLIVSWKMEAEEMCVYSRLEWRRGMSKLGVSSTRQLRQKARGGEGGGAVAVEDRRSPTFREFYMFCFEYAKERGKKSIELDVCLSVWELVLTGPEFPLLKDFSEYLRGAKIPVVTKDMWAQTLAFFCQVDPDLSNFDES 750
            +RAMPTMRDLSASRRASVNELCSFVGATEVESIALLGKFNWNVAEAADAFFSGDVDIAQLVAASMPMPPAPPAVDQ KLDAWFDRYSDADEKDSILDDGIQQFYTELG    D VVLI+SWKMEAEEMCVYSR EWRRGMSK+GVSSTRQLRQK +       V V+DRRSPTFREFYMFCFEYAKERGKKSIELDVCLSVWELVLTGPEFPLLKDFSEYLRGAK+PVVTKDMWAQTLAFFCQVDPDLSNFDES
Sbjct:    1 MRAMPTMRDLSASRRASVNELCSFVGATEVESIALLGKFNWNVAEAADAFFSGDVDIAQLVAASMPMPPAPPAVDQRKLDAWFDRYSDADEKDSILDDGIQQFYTELGVDTQDLVVLIISWKMEAEEMCVYSRQEWRRGMSKMGVSSTRQLRQKLKDLR----VVVDDRRSPTFREFYMFCFEYAKERGKKSIELDVCLSVWELVLTGPEFPLLKDFSEYLRGAKVPVVTKDMWAQTLAFFCQVDPDLSNFDES 250          
BLAST of mRNA_Ecto-sp13_S_contig6712.17607.1 vs. uniprot
Match: A0A7S2V557_9STRA (Defective in cullin neddylation protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V557_9STRA)

HSP 1 Score: 174 bits (442), Expect = 2.780e-50
Identity = 96/252 (38.10%), Postives = 155/252 (61.51%), Query Frame = 1
Query:   22 RDLSASRRASVNELCSFVGATEVESIALLGKFNWNVAEAADAFFSGDV--DIAQLVAASMPMPPAPPAVDQHKLDAWFDRYSDADEKDS---ILDDGIQQFYTELG----DPVVLIVSWKMEAEEMCVYSRLEWRRGMSKLGVSSTRQLRQKARGGEGGGAVAVEDRRSPTFREFYMFCFEYAKERGKKSIELDVCLSVWELVLTGPEFPLLKDFSEYLRG---AKIPVVTKDMWAQTLAFFCQVDPDLSNF 741
            R L++S+R  ++ELC+F GA+E ++ +LL + +W +  AADAFFS ++  + A   +++ P  P PP+++  K+DAWFD+Y++  E D    I DDGI QF  +L     DPVVL++SW M A  MC ++R EW+ GM  +   +   L++K        A+        +F++FY +C+++A++ GKKS+ LD+ L +WELVL    +PL +++ ++L+    A  PV+ KD W   L F  Q+ PDLSN+
Sbjct:    3 RRLTSSQRRRISELCAFTGASERQAASLLAQCDWVIETAADAFFSYNLAPEGAYDASSAQPAAPPPPSINLSKVDAWFDKYAEEPEGDGDRVIADDGITQFCQDLEIDTQDPVVLVLSWHMRAASMCTFTRQEWQCGMKAMHTETLADLKRKLP------ALRRSTDDFTSFKDFYAYCYDFARDEGKKSLGLDMALELWELVLRPRGYPLFQEWIDFLKEGGEAMHPVIPKDTWLLLLDFLHQMQPDLSNY 248          
BLAST of mRNA_Ecto-sp13_S_contig6712.17607.1 vs. uniprot
Match: A0A024U837_9STRA (Defective in cullin neddylation protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U837_9STRA)

HSP 1 Score: 150 bits (380), Expect = 3.340e-41
Identity = 88/237 (37.13%), Postives = 133/237 (56.12%), Query Frame = 1
Query:   52 VNELCSFVGATEVESIALLGKFNWNVAEAADAFFSGDVDIAQLVAASMPMPPAPPAVDQHKLDAWFDRYSDADEKDSILDDGIQQFYTELG----DPVVLIVSWKMEAEEMCVYSRLEWRRGMSKLGVSSTRQLRQKARGGEGGGAVAVEDRRSPTFREFYMFCFEYAKERGKKSIELDVCLSVWELVLTGPEFPLLKDFSEYLRGAKIPVVTKDMWAQTLAFFCQVDPDLSNFDES 750
            V EL +F G     +I LL K  W+V+ AAD FF    + A +             V++  + AWFD+Y+D D+ DS+LD+GI  F  ++G    D VVL+++WKM+A EMC ++R E+ RGM +LG  S   LR K   GE    +A        F+ FY+FCF Y+KE G+KS+  D+ +++WELVL  P+FP + D+  +L+      +T+D W     F  +V+     +DE+
Sbjct:   13 VKELVNFTGCARERAIELLRKHQWSVSAAADVFFEDTANQAAVC-----------TVNEGAVIAWFDKYADPDDPDSMLDEGIMAFCDDIGIDAQDTVVLVIAWKMKAAEMCCFTRTEFVRGMRELGCESAAALRAKL--GEVRECIAAP----AAFKTFYLFCFGYSKEPGQKSLSKDMAVAMWELVLL-PKFPKVADWLAFLQEHPSYGITRDTWDLFYDFMVKVEASYDGYDEN 231          
BLAST of mRNA_Ecto-sp13_S_contig6712.17607.1 vs. uniprot
Match: A0A6H5KQQ2_9PHAE (Defective in cullin neddylation protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQQ2_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 1.970e-40
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 1
Query:  547 ERGKKSIELDVCLSVWELVLTGPEFPLLKDFSEYLRGAKIPVVTKDMWAQTLAFFCQVDPDLSNFDES 750
            ERGKKSIELDVCLSVWELVLTGPEFPLLKDFSEYLRGAK+PVVTKDMWAQTLAFFCQVDPDLSNFDES
Sbjct:    7 ERGKKSIELDVCLSVWELVLTGPEFPLLKDFSEYLRGAKVPVVTKDMWAQTLAFFCQVDPDLSNFDES 74          
BLAST of mRNA_Ecto-sp13_S_contig6712.17607.1 vs. uniprot
Match: A0A7S0IWR0_9EUKA (Defective in cullin neddylation protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IWR0_9EUKA)

HSP 1 Score: 140 bits (353), Expect = 3.280e-37
Identity = 86/246 (34.96%), Postives = 134/246 (54.47%), Query Frame = 1
Query:   28 LSASRRASVNELCSFVGATEVESIALLGKFNWNVAEAADAFFSGDVDIAQLVAASMPMPPAPPAVDQHKLDAWFDRYSDADEKDSILDDGIQQFYTELG----DPVVLIVSWKMEAEEMCVYSRLEWRRGMSKLGVSSTRQLRQKARGGEGGGAVAVEDRRSPTFREFYMFCFEYAKERG--KKSIELDVCLSVWELVLTGPEFPLLKDFSEYLRGAKIPVVTKDMWAQTLAFFCQVDPDLSNFDE 747
            L   +R  + +   F G +E  +  +L +++W + +A DAFFSG    A +           P VD  KL  WFD Y D D  + I   GI++   EL     D V+L+++WKM+A  MCV++R EW RGM+ +GV S  +L++         A+  + + +P F++FY FCF +AKE G   +S+ ++V  ++W L L G  F  L  + E+L+  K   +TKD+W   L F  Q++ + SNFDE
Sbjct:    5 LKRGQRDKIRQFMVFTGCSERVAGDMLKRYDWMLEQAVDAFFSGAASRASI-----------PPVDDAKLIKWFDTYKDVD-AEHIGVPGIEKLCAELDVDPTDVVMLMIAWKMKAATMCVFTREEWVRGMTAMGVDSVDKLKEHF------SALHEQLKSTPAFKDFYCFCFAFAKEPGFGVRSLPIEVADALWRLTLAG-RFKHLDRWLEFLQEKKERAITKDVWEMLLTFATQINDEFSNFDE 231          
BLAST of mRNA_Ecto-sp13_S_contig6712.17607.1 vs. uniprot
Match: A0A1Y1IBL2_KLENI (Defective in cullin neddylation protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IBL2_KLENI)

HSP 1 Score: 135 bits (341), Expect = 2.210e-35
Identity = 81/247 (32.79%), Postives = 131/247 (53.04%), Query Frame = 1
Query:   19 MRDLSASRRASVNELCSFVGATEVESIALLGKFNWNVAEAADAFFSGDVDIAQLVAASMPMPPAPPA-VDQHKLDAWFDRYSDADEKDSILDDGIQQFYTEL----GDPVVLIVSWKMEAEEMCVYSRLEWRRGMSKLGVSSTRQLRQKARGGEGGGAVAVEDRRSPTFREFYMFCFEYAKERGKKSIELDVCLSVWELVLTGPEFPLLKDFSEYLRGAKIPVVTKDMWAQTLAFFCQVDPDLSNFD 744
            M  L+ +++  V + C+   ATE  S+A L   +WNV  A + +++             P P +P    DQ +L+A + RY D    D I  +G+ QF  +L    GD V+L+++W M A  MC +SR E+  G+  +GV S  +LRQ         ++  E +    FRE YMF F++AKE+G+KS+ L+  L +W+L+     +PL+  +  +L+      ++KD W+Q   F   +DP LSN+D
Sbjct:    1 MNKLNKAQKEKVRQFCAIADATEKASVAALKAADWNVEAAFEFYYN------------QPHPSSPQVRTDQRQLEALYSRYKDP-HADQISVEGVSQFCDDLQVDPGDVVMLVIAWHMGAATMCEFSRDEFISGLKSIGVDSISKLRQLLP------SLRAEMKDDNKFREIYMFTFDWAKEKGQKSLALETALGMWKLLYAQKPWPLVDPWCSFLQKKHNKAISKDTWSQVFEFAKSIDPSLSNYD 228          
BLAST of mRNA_Ecto-sp13_S_contig6712.17607.1 vs. uniprot
Match: A0A7S0LQ44_9EUKA (Defective in cullin neddylation protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LQ44_9EUKA)

HSP 1 Score: 134 bits (337), Expect = 1.360e-34
Identity = 88/246 (35.77%), Postives = 136/246 (55.28%), Query Frame = 1
Query:   28 LSASRRASVNELCSFVGATEVESIALLGKFNWNVAEAADAFFSGDVDIAQLVAASMPMPPAPPAVDQHKLDAWFDRYSDADEKDSILDDGIQQFYTELG----DPVVLIVSWKMEAEEMCVYSRLEWRRGMSKLGVSSTRQLRQKARGGEGGGAVAVEDRRSPTFREFYMFCFEYAKERG--KKSIELDVCLSVWELVLTGPEFPLLKDFSEYLRGAKIPVVTKDMWAQTLAFFCQVDPDLSNFDE 747
            L   +R  V +L  F G +E  ++ LL + +W +  A D FFS         AAS P+ P    VD  KL  WFD Y D+D  ++I   GI++F  ELG    D ++L+++WKM++  MCV++R EW RGM  +GV +   L+    G  GG  +  + + +  +++FY FCF +AKE G   +S+ ++V  ++W L+L   EF  L  + E+L   K   +TKD+W   L F   ++ + SNFDE
Sbjct:   27 LKRPQRDKVRQLMVFTGCSERVAMELLKREDWILERAVDTFFSD--------AASQPVGPP---VDTAKLGTWFDTYKDSD-GETIGVQGIEKFCVELGVDPTDIIMLLIAWKMKSATMCVFTREEWVRGMVSIGVDNLNALK----GAFGG--LHEQLKNANAYKDFYSFCFNFAKEPGFGVRSLPIEVADAMWRLILPN-EFKHLARWLEFLEEKKERAITKDVWDMLLTFATSINDEFSNFDE 253          
BLAST of mRNA_Ecto-sp13_S_contig6712.17607.1 vs. uniprot
Match: A0A2K1JS87_PHYPA (Defective in cullin neddylation protein n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JS87_PHYPA)

HSP 1 Score: 129 bits (323), Expect = 9.150e-33
Identity = 82/246 (33.33%), Postives = 126/246 (51.22%), Query Frame = 1
Query:   19 MRDLSASRRASVNELCSFVGATEVESIALLGKFNWNVAEAADAFFSGDVDIAQLVAASMPMPPAPPAVDQHKLDAWFDRYSDADEKDSILDDGIQQFYTEL----GDPVVLIVSWKMEAEEMCVYSRLEWRRGMSKLGVSSTRQLRQKARGGEGGGAVAVEDRRSPTFREFYMFCFEYAKERGKKSIELDVCLSVWELVLTGPEFPLLKDFSEYLRGAKIPVVTKDMWAQTLAFFCQVDPDLSNFD 744
            M  L    R  V +  +  GA E  ++  L   +WN+  A + F++      QL        PA P  D   L+ ++ +Y DA   D IL DG+  F  +L    GD V+L++SW M+A  MC +SR E+  G+  LGV S  +L+          ++  E +    FRE Y F F +AKE+G+KS+ LD  L +W L+     +PL++ + ++L+      ++KD WAQ L F   +DP LSN+D
Sbjct:    1 MNKLGRGHRDKVQQFMTITGANEKAALTALKASDWNLEGAFEIFYN------QL--------PARPVTDPRHLEEFYLKYKDA-YSDMILVDGVSAFCDDLQVDPGDVVMLVISWHMKAVTMCEFSRQEFIGGLQSLGVDSLYKLKHLLP------SLRAELKDEHKFREIYNFSFNWAKEKGQKSLALDTALGMWRLLFAERLWPLVESWCQFLQAKHNKAISKDTWAQLLEFSKTIDPTLSNYD 225          
BLAST of mRNA_Ecto-sp13_S_contig6712.17607.1 vs. uniprot
Match: A0A6U9QDG0_9CHLO (Defective in cullin neddylation protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A6U9QDG0_9CHLO)

HSP 1 Score: 128 bits (321), Expect = 3.300e-32
Identity = 78/249 (31.33%), Postives = 133/249 (53.41%), Query Frame = 1
Query:   16 TMRDLSASRRASVNELCSFVGATEVESIALLGKFNWNVAEAADAFFSGDVDIAQLVAASMPMPPAPPAVDQHKLDAWFDRYSDADEKDSILDDGIQQFYTEL----GDPVVLIVSWKMEAEEMCVYSRLEWRRGMSKLGVSSTRQLRQKARGGEGGGAVAVEDRRSPTFREFYMFCFEYAKERGKKSIELDVCLSVWELVLTGPEFPLLKDFSEYLRGAKIPVVTKDMWAQTLAFFCQVDPDLSNFDES 750
            TM  L+  ++  V + C  +G  E  ++  L   +WNV  A + F+SGD+            P   P VD   L+  + RY D   +D IL +G+ QF  +L     D V+L++S+ ++A+ MC Y+  E+  G++KLG+ S  +++ +         +  E     TFRE Y + F +++E+G+KS+ LDV + +W L+ T   +PLL+D+  +L+      V++D W Q L F  ++  DLS++D S
Sbjct:   26 TMNRLNRVQKEKVRQFCGIIGTDEKLALEALRCADWNVESAIEMFYSGDI------------PSLRPVVDLKALETLYKRYRDK-HQDLILAEGVGQFCDDLDVDPSDVVMLVLSYHLKAQTMCEYTHEEFVNGLAKLGLDSIEKIKDRIP------KMRAELEDPSTFREIYAYAFLFSREKGQKSVMLDVAIEMWRLLFTDGRWPLLEDWCTFLQTYHNKAVSRDTWLQLLEFV-KLGDDLSSYDPS 254          
BLAST of mRNA_Ecto-sp13_S_contig6712.17607.1 vs. uniprot
Match: A0A7S3WL43_9SPIT (Defective in cullin neddylation protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WL43_9SPIT)

HSP 1 Score: 125 bits (313), Expect = 3.280e-31
Identity = 76/252 (30.16%), Postives = 132/252 (52.38%), Query Frame = 1
Query:   10 MPTMRDLSASRRASVNELCSFVGATEVESIALLGKFNWNVAEAADAFFSGDVDIAQLVAASMPMPPAPPAVDQHKLDAWFDRYSDADEKDSILDDGIQQFYTELG----DPVVLIVSWKMEAEEMCVYSRLEWRRGMSKLGVSSTRQLRQKARGGEGGGAVAVEDRRSPTFREFYMFCFEYAKERG--KKSIELDVCLSVWELVLTGPEFPLLKDFSEYLRGAKIPVVTKDMWAQTLAFFCQVDPDLSNFDE 747
            M +   ++  ++    + C F GA+E  +I++L + +W++  A D FFS                 A P VD  K+   FD Y D  E+D  +  G+++F ++LG    D ++L+++W+M+A  MCV++R EW RG S +G  +  +++          A+  +      FR+FY FCF +AK+ G   +++ +DV   +W+L+L G  F  L  + E+    ++  VTKD+W     F   ++ D+SNFDE
Sbjct:    1 MSSASGMARGQKEKTRQFCVFTGASERVAISMLKRTDWHLESAVDTFFSASGGGGFS---------AGPRVDTAKIGKLFDSYRDEGEEDIGIS-GLERFCSDLGVEPTDVIMLLIAWRMKAATMCVFTRDEWIRGFSAVGADTIDKMKAAFP------ALRAQLDEPTAFRDFYGFCFGFAKDPGFGVRTLPMDVASQMWQLIL-GQRFKYLDAWLEFCEVKQVKAVTKDVWDMLFTFSTSINDDMSNFDE 235          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6712.17607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFS0_ECTSI1.420e-15991.34Defective in cullin neddylation protein n=1 Tax=Ec... [more]
A0A7S2V557_9STRA2.780e-5038.10Defective in cullin neddylation protein n=1 Tax=Fi... [more]
A0A024U837_9STRA3.340e-4137.13Defective in cullin neddylation protein n=1 Tax=Ap... [more]
A0A6H5KQQ2_9PHAE1.970e-4098.53Defective in cullin neddylation protein n=1 Tax=Ec... [more]
A0A7S0IWR0_9EUKA3.280e-3734.96Defective in cullin neddylation protein n=1 Tax=Ca... [more]
A0A1Y1IBL2_KLENI2.210e-3532.79Defective in cullin neddylation protein n=1 Tax=Kl... [more]
A0A7S0LQ44_9EUKA1.360e-3435.77Defective in cullin neddylation protein n=1 Tax=Co... [more]
A0A2K1JS87_PHYPA9.150e-3333.33Defective in cullin neddylation protein n=4 Tax=Ph... [more]
A0A6U9QDG0_9CHLO3.300e-3231.33Defective in cullin neddylation protein n=1 Tax=Pi... [more]
A0A7S3WL43_9SPIT3.280e-3130.16Defective in cullin neddylation protein (Fragment)... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6712contigEcto-sp13_S_contig6712:3490..7468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score452.2
Seed ortholog evalue1.5e-124
Seed eggNOG ortholog2880.D8LFS0
Model size750
KEGG koko:K17822
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.cullin family protein binding
EggNOG OGsKOG3077@1,KOG3077@2759
Ec32 ortholog descriptionDefective-in-cullin neddylation protein
Ec32 orthologEc-01_001160.1
Cds size741
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6712.17607.1prot_Ecto-sp13_S_contig6712.17607.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6712 3499..7468 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463923.114374-UTR-Ecto-sp13_S_contig6712:3489..34981681463923.114374-UTR-Ecto-sp13_S_contig6712:3489..3498Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6712 3490..3498 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463923.1255457-CDS-Ecto-sp13_S_contig6712:3498..36211681463923.1255457-CDS-Ecto-sp13_S_contig6712:3498..3621Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6712 3499..3621 +
1681463923.14205-CDS-Ecto-sp13_S_contig6712:4485..45981681463923.14205-CDS-Ecto-sp13_S_contig6712:4485..4598Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6712 4486..4598 +
1681463923.1592221-CDS-Ecto-sp13_S_contig6712:4955..50341681463923.1592221-CDS-Ecto-sp13_S_contig6712:4955..5034Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6712 4956..5034 +
1681463923.1723592-CDS-Ecto-sp13_S_contig6712:5667..58191681463923.1723592-CDS-Ecto-sp13_S_contig6712:5667..5819Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6712 5668..5819 +
1681463923.1813946-CDS-Ecto-sp13_S_contig6712:6396..64651681463923.1813946-CDS-Ecto-sp13_S_contig6712:6396..6465Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6712 6397..6465 +
1681463923.1902704-CDS-Ecto-sp13_S_contig6712:7263..74681681463923.1902704-CDS-Ecto-sp13_S_contig6712:7263..7468Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6712 7264..7468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6712.17607.1

>prot_Ecto-sp13_S_contig6712.17607.1 ID=prot_Ecto-sp13_S_contig6712.17607.1|Name=mRNA_Ecto-sp13_S_contig6712.17607.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=247bp
MPTMRDLSASRRASVNELCSFVGATEVESIALLGKFNWNVAEAADAFFSG
DVDIAQLVAASMPMPPAPPAVDQHKLDAWFDRYSDADEKDSILDDGIQQF
YTELGDPVVLIVSWKMEAEEMCVYSRLEWRRGMSKLGVSSTRQLRQKARG
GEGGGAVAVEDRRSPTFREFYMFCFEYAKERGKKSIELDVCLSVWELVLT
GPEFPLLKDFSEYLRGAKIPVVTKDMWAQTLAFFCQVDPDLSNFDES
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mRNA from alignment at Ecto-sp13_S_contig6712:3490..7468+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6712.17607.1 ID=mRNA_Ecto-sp13_S_contig6712.17607.1|Name=mRNA_Ecto-sp13_S_contig6712.17607.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3979bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6712:3490..7468+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCGAGCGATGCCAACCATGAGGGACCTCAGCGCGTCACGGCGAGCTTC GGTCAACGAGCTCTGCTCGTTTGTGGGAGCAACGGAGGTGGAAAGCATCG CTCTTCTCGGGAAGTTCAATTGGAACGTGGCGGTATGAAGAGTGTGATGG CTTTTTTTTCAAACAGCAAGGGTTGGTTGATGTCTACACTCACTTGTGCT CTGCTGCTGATCGAGGAATGGCTCCAAGAAATCGACATGTATTGCTGTGT CAGCTAACGCTGTGGTTCCATTGCTAATATTCATCCCGGACTGTATCTGT GGGTAAAGTCGATAGAGATTGATTGGTTGTGTTTCTGTGAACAAAAACTC GAAACCGTAGAGTACTCGTACATGACCAAGTAGGATGAGAGATGAAAACA GAGAACCAACGATGGTTGCTGCTCAATCGATGTGAAGTACTTCTTTTTGT AGTCTACATGCGCCAGCTTGGCAGACAACCACATGTACGCATCGCGCACA TGAGCAGCGGGCGAGCAGAGCACAACCCTCGTATATTGGGAATAAGAAAT AGTCTGCAGCCAGCGTCGCGACTCCCTGGATTTCATTTAAGTATAGTGAA CGATGGACATGTTCGATGGACATGCTCATCACTATGTGCACGTAGATACC TCCGGTTCAGTCACCCAAGTAAAGTTCCACTCTACTGTGTAGGGTAAACT GAGTTTTTTTCAGAACGTTTTCTTTTCATTCTTCAAACTTCATGTTTTGC TCTTTGAAGTTTCTAAGTACCGCTACATTCTGCGGTGGTGGGTAGAGGTC AGGACGAGTTTCCGTTCGAATACAACACCAACAACAAGGTCGGTGCCTAT TGACTTCGACGTTAAAACCAACCACGGTATGTATCATTCACTCTTGCACC CTCGGCGTGCTGATCGCCGTATCATCTTGCAACCTTTAGCGAAGCGTCGT TCTCCTACAGCTGCTGCCCCCCCCCCCCGCACACCCTCTGGTTCAGGAGG CAGCGGATGCCTTTTTTTCCGGGGATGTGGACATTGCCCAGCTGGTGGCC GCCTCGATGCCGATGCCGCCGGCGCCTCCGGCTGTCGACCAGCACAAGCT GGACGCATGGTGAGAGGGCAGAGGACATCATCGGGGAGATGCGTTTCGGT GGCCTGGTGTTTCGTTAGTTCGGAAATTGATTTTCTTCTTAACTCTTGCT ATCGGCCTTCTCGTCTGGTTGTTGTTGTTGCTGTTGTTGTTCTTATCGTT GTTGTAGTGTTGCTTGCTGCTGGCTTTGCTGTCATCATCGTTACCGTTGC CGTCCATGCCTCTCGCACACCTGCTGATGGTAGTCCATAGCTGTCGCTTC ACTGAAAGTAAGCCCGCTCCCAGACCCTCCATGTCCGTTCTCCCTCCCAT GTGGCAACATTTATTGCTCGTCGGAAACTTTTTAAGGGGCACTCTTGTAT ATGCGTCGGGGTGCAGGTTTGATCGCTATTCGGACGCGGACGAGAAGGAC TCAATCCTGGACGATGGTATTCAGCAGTTTTACACCGAACTCGGCGTCGA TACCCAGGCAAGGATTTCAAGAATAGGGGCCATGTGCTACCCGCGATGGA AGATAGAGCACACGCACACTCATCAGCCAGTTAGCGCTGTCGATGCTCAT TTTTCACGAGACACACACACACTATATTATCTTGGTTTTGAGGCGCGATG CTTGTACCTGTTCGGTGGGGTTCTTGAATGGTAAGTGTAAGTTTTTCCTA GGCACCTCAGACAACGATGCGATCACAGCAATTTCTTTCTTTGTGATTTA ATTACTTCCCGTGAGTGCAGGTGTTCTGCGAGAGATGGCCGTTCATAGCA CACCCGCGGCTGAATCTGCCGTCTACGCACCTCCCTTCTTCAAGGGCTTC ACGTGTGCCTGAGGCCTACGCCGCTCCTGCTGTCCGAGGATGGCAAAACA ACCATGAAAGATTTCACTGTTGGCGAACTCTTTCCTGATGACAGAGAAGA CATAAATGGGTTCAGTCGGAGGGATTTTCCGGCTGACGTTGGACCGTTAG AGACAATGTGAGGAGGCGTGTTGGTTGAGGAGACGCAAGCCCCACATTGG TGGACTTGGCATTCTCTCGTTCGCGTTCCAATCGATGTGTGTTTTGCCGT CGGCTTTTTTGTTTTTTGTTTTTTTCAGGACCCGGTGGTGCTAATAGTTT CGTGGAAGATGGAGGCGGAGGAGATGTGCGTCTACTCCAGGTTGGAGTGG CGACGGGGTATGTCCAAGCTGGGGGTGTCCTCCACGCGTCAGCTGCGGCA AAAGGCAAGGGGCGGGGAGGGGGGGGGGGCGTGGTCGAGCGAACGGGAGA GAGAGATATATAGAAAGTCGGGGAGAAGGAGGAGGCGATAAGGATAGAGA CACAGACAGAAAGGAGGAGGGGACACATGCAGCAGCGAAAACACGGGGAT GTTGGGAGGGAGGGTGAGAGAAGATGTTGAGACTAGAAAGTCGGACACCA TGTAGATCGTTGAAATTTGCACGTTCTGTAGTTCCGTTAAGGATCCTGAA CATAGGGTGTGATGGGGTGATGGAGTTGCCCTTGCCGCGCGTACGCTGTT CATGGTGTAAGCTGTTTATTATTCGTTTCTGGTGTGGCATGTTGCTTGCT TGCTGTGGTTGGGGTGCAGAAATCAGCTGGTGATCTGTGGCGTGCGAATT TTCATATGCGTGGCGTTTGGAAGTGCCACTGCTTTGTGAATTTGAACGTT AGCACCTATGTGTTTTCAACCACGTGCGGGTTGCAGTCCTGGTCTATCAC CTGGAGGTGTCAGCGGGAAGGCACCGGCCAACACCCTCCATGACCACTCC ACTCGTCGTACGTGTCTCCTCGCAATCGTGAAATGTGTTACAGCTGAAGG ACCTGAGAGTGGCGGTGGAGGACAGGCGGTCTCCGACCTTCAGAGAGTTT TACATGTTCTGCTTCGAATACGCCAAGTGAGCCTCCGGCAGTTTTCCTTT CGATATGTTGAGGTGGTGACAAAGTTGGTGGTTATCTGGCTTGGTGTCTG GATGGATTTGAGCACGTGAGTTTTCGGTGGCTATGGTTTTCCCTCTTAGA CTTGATGCTTGTTTTGCCAAGTAGAGCAATCCCCAACAGCCAAAGACAAC AGTCTTCCACACCACACCCACAATCTTGTTCATCCGTTGTCATGTTTTGA ATCCTCCTCGTGCGGTACTTCATGTTGTTCCAGTGTCTTTCCATAAGTCT TGAAGCTAGCAACGAGACGCGAGGCATGTGCCTTCGCTCTCTTTTGTATA CCTGTTGATTGTCCCACTTTTTTTTTCTCCACAAGTGTGGGGGCGTTATT GGCATCCCTTTGTAGTGTCCGCGAGTCGTCGCGATTCCGCGCTTGCGTTT CTTGAATTTGTTCGTCGAAGCTCCCGCTCGTAGGCATTACCCTCTCTGAT GTTTTCGGAGCAGCAGCAGCAGCAGCAGCAGCAATGCCGTCGAAGCGTGT CACCCCAACGCTGTGTATTTCTTTCTTATACGGGTCCTGGCATTGAAATG CAAAGAGAGATTCAATGGATATTCAAGTTTTTGCGGGCACAGGCGAGAGT ACCTTCCCCCGCCATCACCATCTCTCATGCCATCGGCTTTCCTGCAGGCG TGCTCTCCTGAACTTCTATTGTTTCCCTGCCCTCCCCTCCCCGAGGTCAA TGGTCAAACGACTGCGGCATGCACGGCTCTAAGTATGAGTACACCCCTCC CCCACCCCCCTTGACCTTCCTCAGGGAGAGAGGGAAGAAGTCGATCGAGC TAGACGTGTGCCTGTCCGTGTGGGAGCTCGTCCTGACCGGGCCTGAGTTC CCCCTGCTCAAGGACTTCAGCGAGTACTTGCGGGGCGCCAAGATTCCGGT CGTCACGAAGGACATGTGGGCTCAAACGCTTGCGTTCTTCTGCCAGGTGG ACCCGGACCTCTCCAACTTCGACGAGAGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6712:3490..7468+

>mRNA_Ecto-sp13_S_contig6712.17607.1 ID=mRNA_Ecto-sp13_S_contig6712.17607.1|Name=mRNA_Ecto-sp13_S_contig6712.17607.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=741bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6712:3490..7468+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCAACCATGAGGGACCTCAGCGCGTCACGGCGAGCTTCGGTCAACGA
GCTCTGCTCGTTTGTGGGAGCAACGGAGGTGGAAAGCATCGCTCTTCTCG
GGAAGTTCAATTGGAACGTGGCGGAGGCAGCGGATGCCTTTTTTTCCGGG
GATGTGGACATTGCCCAGCTGGTGGCCGCCTCGATGCCGATGCCGCCGGC
GCCTCCGGCTGTCGACCAGCACAAGCTGGACGCATGGTTTGATCGCTATT
CGGACGCGGACGAGAAGGACTCAATCCTGGACGATGGTATTCAGCAGTTT
TACACCGAACTCGGCGACCCGGTGGTGCTAATAGTTTCGTGGAAGATGGA
GGCGGAGGAGATGTGCGTCTACTCCAGGTTGGAGTGGCGACGGGGTATGT
CCAAGCTGGGGGTGTCCTCCACGCGTCAGCTGCGGCAAAAGGCAAGGGGC
GGGGAGGGGGGGGGGGCAGTGGCGGTGGAGGACAGGCGGTCTCCGACCTT
CAGAGAGTTTTACATGTTCTGCTTCGAATACGCCAAGGAGAGAGGGAAGA
AGTCGATCGAGCTAGACGTGTGCCTGTCCGTGTGGGAGCTCGTCCTGACC
GGGCCTGAGTTCCCCCTGCTCAAGGACTTCAGCGAGTACTTGCGGGGCGC
CAAGATTCCGGTCGTCACGAAGGACATGTGGGCTCAAACGCTTGCGTTCT
TCTGCCAGGTGGACCCGGACCTCTCCAACTTCGACGAGAGT
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