mRNA_Ecto-sp13_S_contig66974.17582.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig66974.17582.1
Unique NamemRNA_Ecto-sp13_S_contig66974.17582.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig66974.17582.1 vs. uniprot
Match: D7FRC3_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRC3_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 1.070e-31
Identity = 64/71 (90.14%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:    1 MSRDRGRGGYGRDDSRDRXXXXDRGRDSGPGKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQ 213
            MSRDRGRGGYGRDDSR R XXX     SGPGKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQ
Sbjct:    1 MSRDRGRGGYGRDDSRGRDXXXXXXXXSGPGKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQ 71
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BLAST of mRNA_Ecto-sp13_S_contig66974.17582.1 vs. uniprot
Match: A0A7S2V1C3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1C3_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 7.700e-11
Identity = 24/43 (55.81%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:   85 GPGKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQ 213
            GP  VSLLVRN+++RTR +D++ IF+ +GD+RDVYLP+D+ ++
Sbjct:   24 GPDGVSLLVRNISYRTRAEDLRYIFSKYGDIRDVYLPMDYHSK 66
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BLAST of mRNA_Ecto-sp13_S_contig66974.17582.1 vs. uniprot
Match: A0A7S3HCI8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HCI8_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.310e-10
Identity = 25/46 (54.35%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:   76 RDSGPGKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQ 213
            RD      SLLVRNL++R R D+++RIF  +GD+RDVY+P D+ TQ
Sbjct:   38 RDGPEATTSLLVRNLSYRVRADEIRRIFVRYGDIRDVYIPQDYHTQ 83
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BLAST of mRNA_Ecto-sp13_S_contig66974.17582.1 vs. uniprot
Match: A0A4D9CT26_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CT26_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.520e-9
Identity = 22/42 (52.38%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:   88 PGKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQ 213
            P ++SLLVRNL F TR +DV+R+F  +G+V+DVY+P+++ T+
Sbjct:   41 PRRISLLVRNLGFDTRQEDVRRLFDKYGEVKDVYIPMNYHTK 82
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BLAST of mRNA_Ecto-sp13_S_contig66974.17582.1 vs. uniprot
Match: A0A418AV71_9STRA (RRM domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AV71_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 9.150e-9
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   70 RGRDSGPGK--VSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQ 213
            RG   GP K  +SLLVRNL   T  DDVK +F+ +G+VRDVY PLD+ T+
Sbjct:   54 RGGGGGPAKAGISLLVRNLNKNTSADDVKELFSQYGEVRDVYTPLDYYTK 103
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BLAST of mRNA_Ecto-sp13_S_contig66974.17582.1 vs. uniprot
Match: S7V383_TOXGG (RNA recognition motif-containing protein n=15 Tax=Toxoplasma gondii TaxID=5811 RepID=S7V383_TOXGG)

HSP 1 Score: 58.2 bits (139), Expect = 1.570e-8
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   79 DSGPGKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGT 210
            D G  ++SLLVRNL+FR+  D+V+  F +FG +RDVYLPLD+ T
Sbjct:    6 DRGRQRLSLLVRNLSFRSSPDEVRAAFEEFGPIRDVYLPLDYHT 49
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BLAST of mRNA_Ecto-sp13_S_contig66974.17582.1 vs. uniprot
Match: A0A024TG81_9STRA (RRM domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TG81_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.860e-8
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   70 RGRDSGPGK--VSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQ 213
            RG   GP K  +SLLVRNL   T  +DVK +F+ +G+VRDVY PLD+ T+
Sbjct:   54 RGGGGGPAKAGISLLVRNLNKNTSAEDVKELFSQYGEVRDVYTPLDYYTK 103
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BLAST of mRNA_Ecto-sp13_S_contig66974.17582.1 vs. uniprot
Match: A0A485LK32_9STRA (Aste57867_22331 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LK32_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.350e-8
Identity = 33/63 (52.38%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:   25 GYGRDDSRDRXXXXDRGRDSGPGKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQ 213
            G  R +SRD      RG    PG +SLLVRNL   T  DDVK +F   G+VRDVY PLDF T+
Sbjct:   39 GRDRTNSRDDDKDKSRGGPLKPG-ISLLVRNLNKSTSADDVKEVFGQHGEVRDVYTPLDFYTK 100
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BLAST of mRNA_Ecto-sp13_S_contig66974.17582.1 vs. uniprot
Match: A0A0F7V4X2_TOXGV (RNA recognition motif-containing protein n=1 Tax=Toxoplasma gondii (strain ATCC 50861 / VEG) TaxID=432359 RepID=A0A0F7V4X2_TOXGV)

HSP 1 Score: 58.2 bits (139), Expect = 3.530e-8
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   79 DSGPGKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGT 210
            D G  ++SLLVRNL+FR+  D+V+  F +FG +RDVYLPLD+ T
Sbjct:    6 DRGRQRLSLLVRNLSFRSSPDEVRAAFEEFGPIRDVYLPLDYHT 49
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BLAST of mRNA_Ecto-sp13_S_contig66974.17582.1 vs. uniprot
Match: W4GIL5_9STRA (RRM domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GIL5_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 7.140e-8
Identity = 25/39 (64.10%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:   97 VSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQ 213
            VSLLVRNL   T  DDVK +F  +G+VRDVY PLDF T+
Sbjct:   70 VSLLVRNLNKSTSADDVKELFNQYGEVRDVYTPLDFYTK 108
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig66974.17582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRC3_ECTSI1.070e-3190.14RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2V1C3_9STRA7.700e-1155.81Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3HCI8_9STRA3.310e-1054.35Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A4D9CT26_9STRA2.520e-952.38RRM domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A418AV71_9STRA9.150e-956.00RRM domain-containing protein n=1 Tax=Aphanomyces ... [more]
S7V383_TOXGG1.570e-856.82RNA recognition motif-containing protein n=15 Tax=... [more]
A0A024TG81_9STRA2.860e-854.00RRM domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A485LK32_9STRA3.350e-852.38Aste57867_22331 protein n=1 Tax=Aphanomyces stella... [more]
A0A0F7V4X2_TOXGV3.530e-856.82RNA recognition motif-containing protein n=1 Tax=T... [more]
W4GIL5_9STRA7.140e-864.10RRM domain-containing protein n=2 Tax=Aphanomyces ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig66974contigEcto-sp13_S_contig66974:461..676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score119.4
Seed ortholog evalue6.9e-25
Seed eggNOG ortholog2880.D7FRC3
Preferred nameSCL25A
Model size216
KEGG koko:K12891,ko:K12900
KEGG Pathwayko03040,ko05168,map03040,map05168
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000244,GO:0000245,GO:0000339,GO:0000340,GO:0000375,GO:0000377,GO:0000381,GO:0000387,GO:0000395,GO:0000398,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005845,GO:0005846,GO:0005886,GO:0006139,GO:0006351,GO:0006353,GO:0006354,GO:0006355,GO:0006366,GO:0006368,GO:0006369,GO:0006370,GO:0006376,GO:0006379,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006408,GO:0006417,GO:0006446,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008104,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0008543,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009301,GO:0009452,GO:0009719,GO:0009889,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016073,GO:0016482,GO:0016604,GO:0016607,GO:0017069,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0019904,GO:0022607,GO:0022613,GO:0022618,GO:0023052,GO:0031123,GO:0031124,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031440,GO:0031442,GO:0031503,GO:0031974,GO:0031981,GO:0032239,GO:0032241,GO:0032268,GO:0032386,GO:0032388,GO:0032774,GO:0032879,GO:0032991,GO:0033036,GO:0033119,GO:0034248,GO:0034518,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0035061,GO:0036260,GO:0042221,GO:0042795,GO:0042802,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0045292,GO:0045934,GO:0045935,GO:0046483,GO:0046700,GO:0046822,GO:0046824,GO:0046831,GO:0046833,GO:0046907,GO:0048024,GO:0048025,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050657,GO:0050658,GO:0050684,GO:0050685,GO:0050686,GO:0050733,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051030,GO:0051049,GO:0051050,GO:0051082,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051252,GO:0051253,GO:0051254,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0060341,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070848,GO:0070887,GO:0071166,GO:0071310,GO:0071363,GO:0071426,GO:0071427,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071774,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0097064,GO:0097159,GO:0097659,GO:0098781,GO:0098787,GO:0098789,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1903311,GO:1903312,GO:1903313,GO:1903506,GO:2000112,GO:2001141
Exons1
EggNOG free text desc.RNA binding
EggNOG OGsKOG0118@1,KOG0118@2759
Cds size216
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463920.6231182-CDS-Ecto-sp13_S_contig66974:460..6761681463920.6231182-CDS-Ecto-sp13_S_contig66974:460..676Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig66974 461..676 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig66974.17582.1prot_Ecto-sp13_S_contig66974.17582.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig66974 461..676 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig66974.17582.1

>prot_Ecto-sp13_S_contig66974.17582.1 ID=prot_Ecto-sp13_S_contig66974.17582.1|Name=mRNA_Ecto-sp13_S_contig66974.17582.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp
MSRDRGRGGYGRDDSRDRDRGGDRGRDSGPGKVSLLVRNLTFRTRVDDVK
RIFTDFGDVRDVYLPLDFGTQ*
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mRNA from alignment at Ecto-sp13_S_contig66974:461..676-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig66974.17582.1 ID=mRNA_Ecto-sp13_S_contig66974.17582.1|Name=mRNA_Ecto-sp13_S_contig66974.17582.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66974:461..676- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCCGCGATAGGGGGAGAGGCGGGTACGGCAGGGACGACAGCCGCGA
CCGCGACCGCGGCGGCGACCGCGGGAGAGATTCCGGGCCGGGAAAGGTCT
CCCTGCTCGTCCGCAACCTGACCTTCCGCACTCGAGTGGACGACGTGAAG
CGTATCTTCACCGACTTCGGGGACGTGCGCGACGTCTACCTTCCCCTCGA
CTTCGGCACACAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig66974:461..676-

>mRNA_Ecto-sp13_S_contig66974.17582.1 ID=mRNA_Ecto-sp13_S_contig66974.17582.1|Name=mRNA_Ecto-sp13_S_contig66974.17582.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66974:461..676- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCCGCGATAGGGGGAGAGGCGGGTACGGCAGGGACGACAGCCGCGA
CCGCGACCGCGGCGGCGACCGCGGGAGAGATTCCGGGCCGGGAAAGGTCT
CCCTGCTCGTCCGCAACCTGACCTTCCGCACTCGAGTGGACGACGTGAAG
CGTATCTTCACCGACTTCGGGGACGTGCGCGACGTCTACCTTCCCCTCGA
CTTCGGCACACAGTGA
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