prot_Ecto-sp13_S_contig66974.17582.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig66974.17582.1
Unique Nameprot_Ecto-sp13_S_contig66974.17582.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length72
Homology
BLAST of mRNA_Ecto-sp13_S_contig66974.17582.1 vs. uniprot
Match: D7FRC3_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRC3_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 1.070e-31
Identity = 64/71 (90.14%), Postives = 64/71 (90.14%), Query Frame = 0
Query:    1 MSRDRGRGGYGRDDSRDRXXXXDRGRDSGPGKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQ 71
            MSRDRGRGGYGRDDSR R XXX     SGPGKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQ
Sbjct:    1 MSRDRGRGGYGRDDSRGRDXXXXXXXXSGPGKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQ 71          
BLAST of mRNA_Ecto-sp13_S_contig66974.17582.1 vs. uniprot
Match: A0A7S2V1C3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1C3_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 7.700e-11
Identity = 24/43 (55.81%), Postives = 37/43 (86.05%), Query Frame = 0
Query:   29 GPGKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQ 71
            GP  VSLLVRN+++RTR +D++ IF+ +GD+RDVYLP+D+ ++
Sbjct:   24 GPDGVSLLVRNISYRTRAEDLRYIFSKYGDIRDVYLPMDYHSK 66          
BLAST of mRNA_Ecto-sp13_S_contig66974.17582.1 vs. uniprot
Match: A0A7S3HCI8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HCI8_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.310e-10
Identity = 25/46 (54.35%), Postives = 34/46 (73.91%), Query Frame = 0
Query:   26 RDSGPGKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQ 71
            RD      SLLVRNL++R R D+++RIF  +GD+RDVY+P D+ TQ
Sbjct:   38 RDGPEATTSLLVRNLSYRVRADEIRRIFVRYGDIRDVYIPQDYHTQ 83          
BLAST of mRNA_Ecto-sp13_S_contig66974.17582.1 vs. uniprot
Match: A0A4D9CT26_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CT26_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.520e-9
Identity = 22/42 (52.38%), Postives = 35/42 (83.33%), Query Frame = 0
Query:   30 PGKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQ 71
            P ++SLLVRNL F TR +DV+R+F  +G+V+DVY+P+++ T+
Sbjct:   41 PRRISLLVRNLGFDTRQEDVRRLFDKYGEVKDVYIPMNYHTK 82          
BLAST of mRNA_Ecto-sp13_S_contig66974.17582.1 vs. uniprot
Match: A0A418AV71_9STRA (RRM domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AV71_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 9.150e-9
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 0
Query:   24 RGRDSGPGK--VSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQ 71
            RG   GP K  +SLLVRNL   T  DDVK +F+ +G+VRDVY PLD+ T+
Sbjct:   54 RGGGGGPAKAGISLLVRNLNKNTSADDVKELFSQYGEVRDVYTPLDYYTK 103          
BLAST of mRNA_Ecto-sp13_S_contig66974.17582.1 vs. uniprot
Match: S7V383_TOXGG (RNA recognition motif-containing protein n=15 Tax=Toxoplasma gondii TaxID=5811 RepID=S7V383_TOXGG)

HSP 1 Score: 58.2 bits (139), Expect = 1.570e-8
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 0
Query:   27 DSGPGKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGT 70
            D G  ++SLLVRNL+FR+  D+V+  F +FG +RDVYLPLD+ T
Sbjct:    6 DRGRQRLSLLVRNLSFRSSPDEVRAAFEEFGPIRDVYLPLDYHT 49          
BLAST of mRNA_Ecto-sp13_S_contig66974.17582.1 vs. uniprot
Match: A0A024TG81_9STRA (RRM domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TG81_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.860e-8
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 0
Query:   24 RGRDSGPGK--VSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQ 71
            RG   GP K  +SLLVRNL   T  +DVK +F+ +G+VRDVY PLD+ T+
Sbjct:   54 RGGGGGPAKAGISLLVRNLNKNTSAEDVKELFSQYGEVRDVYTPLDYYTK 103          
BLAST of mRNA_Ecto-sp13_S_contig66974.17582.1 vs. uniprot
Match: A0A485LK32_9STRA (Aste57867_22331 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LK32_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.350e-8
Identity = 33/63 (52.38%), Postives = 38/63 (60.32%), Query Frame = 0
Query:    9 GYGRDDSRDRXXXXDRGRDSGPGKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQ 71
            G  R +SRD      RG    PG +SLLVRNL   T  DDVK +F   G+VRDVY PLDF T+
Sbjct:   39 GRDRTNSRDDDKDKSRGGPLKPG-ISLLVRNLNKSTSADDVKEVFGQHGEVRDVYTPLDFYTK 100          
BLAST of mRNA_Ecto-sp13_S_contig66974.17582.1 vs. uniprot
Match: A0A0F7V4X2_TOXGV (RNA recognition motif-containing protein n=1 Tax=Toxoplasma gondii (strain ATCC 50861 / VEG) TaxID=432359 RepID=A0A0F7V4X2_TOXGV)

HSP 1 Score: 58.2 bits (139), Expect = 3.530e-8
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 0
Query:   27 DSGPGKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGT 70
            D G  ++SLLVRNL+FR+  D+V+  F +FG +RDVYLPLD+ T
Sbjct:    6 DRGRQRLSLLVRNLSFRSSPDEVRAAFEEFGPIRDVYLPLDYHT 49          
BLAST of mRNA_Ecto-sp13_S_contig66974.17582.1 vs. uniprot
Match: W4GIL5_9STRA (RRM domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GIL5_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 7.140e-8
Identity = 25/39 (64.10%), Postives = 29/39 (74.36%), Query Frame = 0
Query:   33 VSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQ 71
            VSLLVRNL   T  DDVK +F  +G+VRDVY PLDF T+
Sbjct:   70 VSLLVRNLNKSTSADDVKELFNQYGEVRDVYTPLDFYTK 108          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig66974.17582.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRC3_ECTSI1.070e-3190.14RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2V1C3_9STRA7.700e-1155.81Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3HCI8_9STRA3.310e-1054.35Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A4D9CT26_9STRA2.520e-952.38RRM domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A418AV71_9STRA9.150e-956.00RRM domain-containing protein n=1 Tax=Aphanomyces ... [more]
S7V383_TOXGG1.570e-856.82RNA recognition motif-containing protein n=15 Tax=... [more]
A0A024TG81_9STRA2.860e-854.00RRM domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A485LK32_9STRA3.350e-852.38Aste57867_22331 protein n=1 Tax=Aphanomyces stella... [more]
A0A0F7V4X2_TOXGV3.530e-856.82RNA recognition motif-containing protein n=1 Tax=T... [more]
W4GIL5_9STRA7.140e-864.10RRM domain-containing protein n=2 Tax=Aphanomyces ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..71
e-value: 2.2E-8
score: 36.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 35..69
e-value: 9.2E-5
score: 22.2
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 6..70

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig66974contigEcto-sp13_S_contig66974:461..676 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig66974.17582.1mRNA_Ecto-sp13_S_contig66974.17582.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig66974 461..676 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig66974.17582.1 ID=prot_Ecto-sp13_S_contig66974.17582.1|Name=mRNA_Ecto-sp13_S_contig66974.17582.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp
MSRDRGRGGYGRDDSRDRDRGGDRGRDSGPGKVSLLVRNLTFRTRVDDVK
RIFTDFGDVRDVYLPLDFGTQ*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
IPR035979RBD_domain_sf