prot_Ecto-sp13_S_contig6694.17578.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6694.17578.1
Unique Nameprot_Ecto-sp13_S_contig6694.17578.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length82
Homology
BLAST of mRNA_Ecto-sp13_S_contig6694.17578.1 vs. uniprot
Match: D7G1C0_ECTSI (Lissencephaly-1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C0_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 2.740e-42
Identity = 80/92 (86.96%), Postives = 82/92 (89.13%), Query Frame = 0
Query:    1 FRGLLEKKWTSVVRLQRK----------ARKDLKSGVRPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 82
            FRGLLEKKWTSVVRLQRK          A++DLKSGVRPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW
Sbjct:   48 FRGLLEKKWTSVVRLQRKVMDLEARLDQAQQDLKSGVRPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 139          
BLAST of mRNA_Ecto-sp13_S_contig6694.17578.1 vs. uniprot
Match: A0A6H5JKZ3_9PHAE (Ge1_WD40 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKZ3_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 4.430e-33
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0
Query:   19 ARKDLKSGVRPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 82
            A+ DLKSGVRPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW
Sbjct:   10 AQDDLKSGVRPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 73          
BLAST of mRNA_Ecto-sp13_S_contig6694.17578.1 vs. uniprot
Match: A0A835Z701_9STRA (Lissencephaly-1 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z701_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.670e-21
Identity = 55/94 (58.51%), Postives = 68/94 (72.34%), Query Frame = 0
Query:    3 GLLEKKWTSVVRLQRKARKDLKSGV--------------RPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 82
            GLLEKKWTSVVRLQRK   DL++ +              RPGREK AG   R+LPRAPAK +L GHR+ VT VA+HP+YS+VAS+SEDA+V++W
Sbjct:   50 GLLEKKWTSVVRLQRKVL-DLEAKLAAMVSEQSSAGGAQRPGREKAAGA--RLLPRAPAKHLLAGHRSSVTAVAMHPVYSLVASASEDASVRIW 140          
BLAST of mRNA_Ecto-sp13_S_contig6694.17578.1 vs. uniprot
Match: A0A8K1CCN7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCN7_PYTOL)

HSP 1 Score: 90.1 bits (222), Expect = 2.170e-19
Identity = 51/93 (54.84%), Postives = 61/93 (65.59%), Query Frame = 0
Query:    3 GLLEKKWTSVVRLQRKAR------KDLKSGVRPG-----REKGAGGSDRV--LPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 82
            GLLEKKWTSV+RLQRK        K L+   + G     R+   GG  +   LPR P K  LTGHRNP+TCVA HP++SV+ SSSEDAT+KVW
Sbjct:   35 GLLEKKWTSVIRLQRKVMELEGKVKQLEESSKLGGIVSRRDVVGGGRSKAEFLPRGPPKYSLTGHRNPITCVAFHPVFSVIVSSSEDATIKVW 127          
BLAST of mRNA_Ecto-sp13_S_contig6694.17578.1 vs. uniprot
Match: K3WAC5_GLOUD (Lissencephaly-1 homolog n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAC5_GLOUD)

HSP 1 Score: 89.4 bits (220), Expect = 4.790e-19
Identity = 55/104 (52.88%), Postives = 61/104 (58.65%), Query Frame = 0
Query:    3 GLLEKKWTSVVRLQRK----------------------ARKDLKSGVRPGREKGAGGSDR--VLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 82
            GLLEKKWTSV+RLQRK                      +R+DL  G       G GG  R   LPRAP K  LTGHR+PVTCVA HP++SV AS SEDATVKVW
Sbjct:   49 GLLEKKWTSVIRLQRKVMELENKVQLLEETAKLGNGVVSRRDLLGG-------GIGGRPRSEFLPRAPPKYALTGHRSPVTCVAFHPVFSVFASGSEDATVKVW 145          
BLAST of mRNA_Ecto-sp13_S_contig6694.17578.1 vs. uniprot
Match: A0A225W249_9STRA (Lissencephaly-1 homolog n=2 Tax=Phytophthora TaxID=4783 RepID=A0A225W249_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 6.500e-19
Identity = 52/92 (56.52%), Postives = 61/92 (66.30%), Query Frame = 0
Query:    3 GLLEKKWTSVVRLQRKARK------DLKSGVRPG----REKGAGGSDRV--LPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 82
            GLLEKKWTSV+RLQRK  +       L+  V+ G    R    G   R   LPRAPAK  LTGHR+P+TCVA HP++SV+ S SEDATVKVW
Sbjct:   49 GLLEKKWTSVIRLQRKVMELETKVAQLEENVKLGGVLSRRDVLGARQRTEFLPRAPAKFSLTGHRSPITCVAFHPVFSVLVSGSEDATVKVW 140          
BLAST of mRNA_Ecto-sp13_S_contig6694.17578.1 vs. uniprot
Match: A0A7S0SXC9_9STRA (Lissencephaly-1 homolog n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SXC9_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 8.150e-19
Identity = 48/99 (48.48%), Postives = 66/99 (66.67%), Query Frame = 0
Query:    2 RGLLEKKWTSVVRLQRKA----------RKDLKSGVRP-GREKGA-------GGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 82
            +G+LEKKWTSVVRLQ++           +K LKSG+   G E          G ++R++P+ PAK  L+GHR PVTC+A HP+YS+VAS SED+T+K+W
Sbjct:   49 KGILEKKWTSVVRLQKRVMELETQLNDLQKQLKSGIATNGIENDTLKTNATIGENNRLIPKGPAKASLSGHRGPVTCIATHPIYSLVASGSEDSTIKLW 147          
BLAST of mRNA_Ecto-sp13_S_contig6694.17578.1 vs. uniprot
Match: A0A0C3FII8_PILCF (Nuclear distribution protein PAC1 n=1 Tax=Piloderma croceum (strain F 1598) TaxID=765440 RepID=A0A0C3FII8_PILCF)

HSP 1 Score: 88.6 bits (218), Expect = 8.190e-19
Identity = 48/88 (54.55%), Postives = 58/88 (65.91%), Query Frame = 0
Query:    1 FRGLLEKKWTSVVRLQRKA------RKDLKSGVRPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 82
            F GLLEKKWTSV+RLQ+K          L+  +     K A      +PRAPA  VLTGHR+P+T VA HP YS++ASSSEDATVK+W
Sbjct:   48 FAGLLEKKWTSVIRLQKKIMDLENRNSALQEELSLSPAKRAASQTDWVPRAPAAHVLTGHRSPITAVAFHPQYSIIASSSEDATVKIW 135          
BLAST of mRNA_Ecto-sp13_S_contig6694.17578.1 vs. uniprot
Match: M4BL66_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BL66_HYAAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.070e-18
Identity = 51/92 (55.43%), Postives = 59/92 (64.13%), Query Frame = 0
Query:    3 GLLEKKWTSVVRLQRKA----------RKDLKSGVRPGREKGAGGSDRV--LPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 82
            GLLEKKWTSV+RLQRK            +  K G    R    G   R   LPR PAK  LTGHR+P+TCVA HP++SV+AS+SEDATVKVW
Sbjct:   28 GLLEKKWTSVIRLQRKVMELETKVAQLEETAKLGGVLSRRDVLGARQRAEFLPRVPAKLTLTGHRSPITCVAFHPVFSVLASASEDATVKVW 119          
BLAST of mRNA_Ecto-sp13_S_contig6694.17578.1 vs. uniprot
Match: A0A4Q2DJH5_9AGAR (Nuclear distribution protein PAC1 n=4 Tax=Psathyrellaceae TaxID=184208 RepID=A0A4Q2DJH5_9AGAR)

HSP 1 Score: 88.2 bits (217), Expect = 1.110e-18
Identity = 48/85 (56.47%), Postives = 59/85 (69.41%), Query Frame = 0
Query:    1 FRGLLEKKWTSVVRLQRKARK---DLKSGVRPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 82
            + GLLEKKWTSV+RLQ+KA+     L+  +     K A      LPRAPA  VLTGHR P+T VA HP YS++AS+SEDATVK+W
Sbjct:   48 YTGLLEKKWTSVIRLQKKAKNRNAQLQEELSLSPAKRAAAQTDWLPRAPAAHVLTGHRAPLTRVAFHPQYSILASASEDATVKIW 132          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6694.17578.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1C0_ECTSI2.740e-4286.96Lissencephaly-1 homolog n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKZ3_9PHAE4.430e-3396.88Ge1_WD40 domain-containing protein (Fragment) n=1 ... [more]
A0A835Z701_9STRA2.670e-2158.51Lissencephaly-1 homolog n=1 Tax=Tribonema minus Ta... [more]
A0A8K1CCN7_PYTOL2.170e-1954.84Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WAC5_GLOUD4.790e-1952.88Lissencephaly-1 homolog n=1 Tax=Globisporangium ul... [more]
A0A225W249_9STRA6.500e-1956.52Lissencephaly-1 homolog n=2 Tax=Phytophthora TaxID... [more]
A0A7S0SXC9_9STRA8.150e-1948.48Lissencephaly-1 homolog n=1 Tax=Chromulina nebulos... [more]
A0A0C3FII8_PILCF8.190e-1954.55Nuclear distribution protein PAC1 n=1 Tax=Piloderm... [more]
M4BL66_HYAAE1.070e-1855.43Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A4Q2DJH5_9AGAR1.110e-1856.47Nuclear distribution protein PAC1 n=4 Tax=Psathyre... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 43..82
e-value: 1.8E-8
score: 35.6
NoneNo IPR availableGENE3D1.20.960.30coord: 1..37
e-value: 2.2E-7
score: 32.6
NoneNo IPR availablePANTHERPTHR44129:SF7coord: 2..82
NoneNo IPR availablePANTHERPTHR44129FAMILY NOT NAMEDcoord: 2..82
IPR001680WD40 repeatPFAMPF00400WD40coord: 49..82
e-value: 1.7E-7
score: 31.8
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 51..82
score: 15.287
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 51..82
score: 13.923
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 50..82
IPR037190LIS1, N-terminalSUPERFAMILY109925Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domaincoord: 2..19

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6694contigEcto-sp13_S_contig6694:6833..8040 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6694.17578.1mRNA_Ecto-sp13_S_contig6694.17578.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6694 6833..8040 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6694.17578.1 ID=prot_Ecto-sp13_S_contig6694.17578.1|Name=mRNA_Ecto-sp13_S_contig6694.17578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
FRGLLEKKWTSVVRLQRKARKDLKSGVRPGREKGAGGSDRVLPRAPAKGV
LTGHRNPVTCVALHPLYSVVASSSEDATVKVW
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR001680WD40_repeat
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf
IPR037190LIS1_N