mRNA_Ecto-sp13_S_contig6694.17578.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6694.17578.1
Unique NamemRNA_Ecto-sp13_S_contig6694.17578.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6694.17578.1 vs. uniprot
Match: D7G1C0_ECTSI (Lissencephaly-1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C0_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 2.740e-42
Identity = 80/92 (86.96%), Postives = 82/92 (89.13%), Query Frame = 1 
Query:    1 FRGLLEKKWTSVVRLQRK----------ARKDLKSGVRPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 246
            FRGLLEKKWTSVVRLQRK          A++DLKSGVRPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW
Sbjct:   48 FRGLLEKKWTSVVRLQRKVMDLEARLDQAQQDLKSGVRPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 139
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BLAST of mRNA_Ecto-sp13_S_contig6694.17578.1 vs. uniprot
Match: A0A6H5JKZ3_9PHAE (Ge1_WD40 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKZ3_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 4.430e-33
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 1 
Query:   55 ARKDLKSGVRPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 246
            A+ DLKSGVRPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW
Sbjct:   10 AQDDLKSGVRPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 73
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BLAST of mRNA_Ecto-sp13_S_contig6694.17578.1 vs. uniprot
Match: A0A835Z701_9STRA (Lissencephaly-1 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z701_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.670e-21
Identity = 55/94 (58.51%), Postives = 68/94 (72.34%), Query Frame = 1 
Query:    7 GLLEKKWTSVVRLQRKARKDLKSGV--------------RPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 246
            GLLEKKWTSVVRLQRK   DL++ +              RPGREK AG   R+LPRAPAK +L GHR+ VT VA+HP+YS+VAS+SEDA+V++W
Sbjct:   50 GLLEKKWTSVVRLQRKVL-DLEAKLAAMVSEQSSAGGAQRPGREKAAGA--RLLPRAPAKHLLAGHRSSVTAVAMHPVYSLVASASEDASVRIW 140
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BLAST of mRNA_Ecto-sp13_S_contig6694.17578.1 vs. uniprot
Match: A0A8K1CCN7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCN7_PYTOL)

HSP 1 Score: 90.1 bits (222), Expect = 2.170e-19
Identity = 51/93 (54.84%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:    7 GLLEKKWTSVVRLQRKAR------KDLKSGVRPG-----REKGAGGSDRV--LPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 246
            GLLEKKWTSV+RLQRK        K L+   + G     R+   GG  +   LPR P K  LTGHRNP+TCVA HP++SV+ SSSEDAT+KVW
Sbjct:   35 GLLEKKWTSVIRLQRKVMELEGKVKQLEESSKLGGIVSRRDVVGGGRSKAEFLPRGPPKYSLTGHRNPITCVAFHPVFSVIVSSSEDATIKVW 127
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BLAST of mRNA_Ecto-sp13_S_contig6694.17578.1 vs. uniprot
Match: K3WAC5_GLOUD (Lissencephaly-1 homolog n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAC5_GLOUD)

HSP 1 Score: 89.4 bits (220), Expect = 4.790e-19
Identity = 55/104 (52.88%), Postives = 61/104 (58.65%), Query Frame = 1 
Query:    7 GLLEKKWTSVVRLQRK----------------------ARKDLKSGVRPGREKGAGGSDR--VLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 246
            GLLEKKWTSV+RLQRK                      +R+DL  G       G GG  R   LPRAP K  LTGHR+PVTCVA HP++SV AS SEDATVKVW
Sbjct:   49 GLLEKKWTSVIRLQRKVMELENKVQLLEETAKLGNGVVSRRDLLGG-------GIGGRPRSEFLPRAPPKYALTGHRSPVTCVAFHPVFSVFASGSEDATVKVW 145
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BLAST of mRNA_Ecto-sp13_S_contig6694.17578.1 vs. uniprot
Match: A0A225W249_9STRA (Lissencephaly-1 homolog n=2 Tax=Phytophthora TaxID=4783 RepID=A0A225W249_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 6.500e-19
Identity = 52/92 (56.52%), Postives = 61/92 (66.30%), Query Frame = 1 
Query:    7 GLLEKKWTSVVRLQRKARK------DLKSGVRPG----REKGAGGSDRV--LPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 246
            GLLEKKWTSV+RLQRK  +       L+  V+ G    R    G   R   LPRAPAK  LTGHR+P+TCVA HP++SV+ S SEDATVKVW
Sbjct:   49 GLLEKKWTSVIRLQRKVMELETKVAQLEENVKLGGVLSRRDVLGARQRTEFLPRAPAKFSLTGHRSPITCVAFHPVFSVLVSGSEDATVKVW 140
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BLAST of mRNA_Ecto-sp13_S_contig6694.17578.1 vs. uniprot
Match: A0A7S0SXC9_9STRA (Lissencephaly-1 homolog n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SXC9_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 8.150e-19
Identity = 48/99 (48.48%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:    4 RGLLEKKWTSVVRLQRKA----------RKDLKSGVRP-GREKGA-------GGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 246
            +G+LEKKWTSVVRLQ++           +K LKSG+   G E          G ++R++P+ PAK  L+GHR PVTC+A HP+YS+VAS SED+T+K+W
Sbjct:   49 KGILEKKWTSVVRLQKRVMELETQLNDLQKQLKSGIATNGIENDTLKTNATIGENNRLIPKGPAKASLSGHRGPVTCIATHPIYSLVASGSEDSTIKLW 147
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BLAST of mRNA_Ecto-sp13_S_contig6694.17578.1 vs. uniprot
Match: A0A0C3FII8_PILCF (Nuclear distribution protein PAC1 n=1 Tax=Piloderma croceum (strain F 1598) TaxID=765440 RepID=A0A0C3FII8_PILCF)

HSP 1 Score: 88.6 bits (218), Expect = 8.190e-19
Identity = 48/88 (54.55%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:    1 FRGLLEKKWTSVVRLQRKA------RKDLKSGVRPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 246
            F GLLEKKWTSV+RLQ+K          L+  +     K A      +PRAPA  VLTGHR+P+T VA HP YS++ASSSEDATVK+W
Sbjct:   48 FAGLLEKKWTSVIRLQKKIMDLENRNSALQEELSLSPAKRAASQTDWVPRAPAAHVLTGHRSPITAVAFHPQYSIIASSSEDATVKIW 135
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BLAST of mRNA_Ecto-sp13_S_contig6694.17578.1 vs. uniprot
Match: M4BL66_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BL66_HYAAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.070e-18
Identity = 51/92 (55.43%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:    7 GLLEKKWTSVVRLQRKA----------RKDLKSGVRPGREKGAGGSDRV--LPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 246
            GLLEKKWTSV+RLQRK            +  K G    R    G   R   LPR PAK  LTGHR+P+TCVA HP++SV+AS+SEDATVKVW
Sbjct:   28 GLLEKKWTSVIRLQRKVMELETKVAQLEETAKLGGVLSRRDVLGARQRAEFLPRVPAKLTLTGHRSPITCVAFHPVFSVLASASEDATVKVW 119
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BLAST of mRNA_Ecto-sp13_S_contig6694.17578.1 vs. uniprot
Match: A0A4Q2DJH5_9AGAR (Nuclear distribution protein PAC1 n=4 Tax=Psathyrellaceae TaxID=184208 RepID=A0A4Q2DJH5_9AGAR)

HSP 1 Score: 88.2 bits (217), Expect = 1.110e-18
Identity = 48/85 (56.47%), Postives = 59/85 (69.41%), Query Frame = 1 
Query:    1 FRGLLEKKWTSVVRLQRKARK---DLKSGVRPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVW 246
            + GLLEKKWTSV+RLQ+KA+     L+  +     K A      LPRAPA  VLTGHR P+T VA HP YS++AS+SEDATVK+W
Sbjct:   48 YTGLLEKKWTSVIRLQKKAKNRNAQLQEELSLSPAKRAAAQTDWLPRAPAAHVLTGHRAPLTRVAFHPQYSILASASEDATVKIW 132
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6694.17578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1C0_ECTSI2.740e-4286.96Lissencephaly-1 homolog n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKZ3_9PHAE4.430e-3396.88Ge1_WD40 domain-containing protein (Fragment) n=1 ... [more]
A0A835Z701_9STRA2.670e-2158.51Lissencephaly-1 homolog n=1 Tax=Tribonema minus Ta... [more]
A0A8K1CCN7_PYTOL2.170e-1954.84Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WAC5_GLOUD4.790e-1952.88Lissencephaly-1 homolog n=1 Tax=Globisporangium ul... [more]
A0A225W249_9STRA6.500e-1956.52Lissencephaly-1 homolog n=2 Tax=Phytophthora TaxID... [more]
A0A7S0SXC9_9STRA8.150e-1948.48Lissencephaly-1 homolog n=1 Tax=Chromulina nebulos... [more]
A0A0C3FII8_PILCF8.190e-1954.55Nuclear distribution protein PAC1 n=1 Tax=Piloderm... [more]
M4BL66_HYAAE1.070e-1855.43Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A4Q2DJH5_9AGAR1.110e-1856.47Nuclear distribution protein PAC1 n=4 Tax=Psathyre... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6694contigEcto-sp13_S_contig6694:6833..8040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score152.1
Seed ortholog evalue1.1e-34
Seed eggNOG ortholog2880.D7G1C0
Model size246
KEGG rclassRC00037,RC00094
KEGG koko:K16794
KEGG ReactionR04452
KEGG Pathwayko00565,ko01100,map00565,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000775,GO:0000776,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005874,GO:0005875,GO:0005938,GO:0007154,GO:0007165,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0009987,GO:0015630,GO:0015631,GO:0017016,GO:0017048,GO:0019899,GO:0019932,GO:0019933,GO:0019935,GO:0023052,GO:0031267,GO:0031592,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035556,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044380,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044877,GO:0045504,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051179,GO:0051640,GO:0051641,GO:0051642,GO:0051645,GO:0051716,GO:0061842,GO:0065007,GO:0070727,GO:0070840,GO:0071539,GO:0071944,GO:0072698,GO:0098687,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:1905508
Exons2
EggNOG free text desc.cell division
EggNOG OGsKOG0295@1,KOG0295@2759
Cds size246
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463920.3552196-CDS-Ecto-sp13_S_contig6694:6832..68931681463920.3552196-CDS-Ecto-sp13_S_contig6694:6832..6893Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6694 6833..6893 +
1681463920.3660522-CDS-Ecto-sp13_S_contig6694:7855..80401681463920.3660522-CDS-Ecto-sp13_S_contig6694:7855..8040Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6694 7856..8040 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6694.17578.1prot_Ecto-sp13_S_contig6694.17578.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6694 6833..8040 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6694.17578.1

>prot_Ecto-sp13_S_contig6694.17578.1 ID=prot_Ecto-sp13_S_contig6694.17578.1|Name=mRNA_Ecto-sp13_S_contig6694.17578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
FRGLLEKKWTSVVRLQRKARKDLKSGVRPGREKGAGGSDRVLPRAPAKGV
LTGHRNPVTCVALHPLYSVVASSSEDATVKVW
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mRNA from alignment at Ecto-sp13_S_contig6694:6833..8040+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6694.17578.1 ID=mRNA_Ecto-sp13_S_contig6694.17578.1|Name=mRNA_Ecto-sp13_S_contig6694.17578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1208bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6694:6833..8040+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCGTGGTTTGCTGGAGAAGAAATGGACGTCTGTCGTTCGCCTCCAGAG
AAAGGCGAGGAGTTGCGAGGCTTAGCTATTATTGGCCTTGCACGGCTGAT
TTGCATGCGTCGTTGCTCGTTGTAGCTTAAGTTTACTGCTGTGTCCTGGA
GACCATCTCGCCTTCTGTGGGTATTGTGATACATGGTATGCATATGCTGT
TTGTATTTTCCTTGCGATAACCCTAGCACAGGTGAAAGCGTATTTGCTGT
TGTTTATTGCCAGCACAACGAAGCGAGACCCGTGTTCATACTGGCAAACA
GAGTCCGACGGAGTACAACAGCAGGGGAGGTGGGTTGGAAGAATTGCTCG
CTGTTTCTGGTGCCGCTACAGAAGGCCATCTAACATGAAACAGAGAGAGA
AGTTGCGTTTCAAGAGCGAGTGAACCGTGTCTTGCCAGTTTAATTCTTGG
AGAGGAGTGCGGACGTCTGCAGCCCCACGTGGATGTAGGTCGACGTTTTA
TGGTGGAGAACCGCTAGAAGAACCTGCTACAAACGAAGCGGCACCCTACA
GCTAAGGGATCAGGGCCGTGGTTGGTGCTTAGATCTTGCGCAGCAGTAGC
GTACCCTCTTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGTTGTCCTA
TCAATGGTTGTCCTAGTTGTCGTTGATCTTCCTGAATGCTGAACTTTCTC
CACCGACTTCGGTGCTGGGTGTTGGCGGTCCTTTCCCGCTCTGCTGTACC
TACAGATATCATAGGTGCTCTGCTATCCCTGGTTACATTCCCATCGGTCG
CTGTGTACTTGCATCTGGGGTGCATTTGACTTGGCTGTAGATAATCGTTC
CGGAGATACGAACATTGTGATTCAACGGAACACGCCCATGTGCTCCAGAA
ACCGAGAAGATTCTGGGTCCAACATGCCCCGTCGCCGTTGCTCTCCGTCT
GCCTCTCTCCTCTACACTACTCTCTACCATTCACAGGTCATGGACCTCGA
GGCGCGATTGGACCAGGCGCAAGAAGACCTCAAGAGCGGGGTCAGACCAG
GGAGAGAAAAGGGCGCTGGCGGGAGCGATCGCGTGTTGCCGAGGGCGCCG
GCGAAGGGCGTGCTCACTGGACACCGGAACCCGGTCACGTGCGTGGCTCT
GCATCCGCTCTACAGCGTCGTCGCTTCCTCCAGCGAGGACGCCACGGTCA
AGGTATGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6694:6833..8040+

>mRNA_Ecto-sp13_S_contig6694.17578.1 ID=mRNA_Ecto-sp13_S_contig6694.17578.1|Name=mRNA_Ecto-sp13_S_contig6694.17578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6694:6833..8040+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCGTGGTTTGCTGGAGAAGAAATGGACGTCTGTCGTTCGCCTCCAGAG
AAAGGCGAGGAAAGACCTCAAGAGCGGGGTCAGACCAGGGAGAGAAAAGG
GCGCTGGCGGGAGCGATCGCGTGTTGCCGAGGGCGCCGGCGAAGGGCGTG
CTCACTGGACACCGGAACCCGGTCACGTGCGTGGCTCTGCATCCGCTCTA
CAGCGTCGTCGCTTCCTCCAGCGAGGACGCCACGGTCAAGGTATGG
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