mRNA_Ecto-sp13_S_contig6693.17576.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6693.17576.1
Unique NamemRNA_Ecto-sp13_S_contig6693.17576.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6693.17576.1 vs. uniprot
Match: A0A6H5KAZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAZ5_9PHAE)

HSP 1 Score: 449 bits (1154), Expect = 5.150e-151
Identity = 335/388 (86.34%), Postives = 341/388 (87.89%), Query Frame = 3 
Query:  144 MDMDIPLQXXXXXXXXXXXXXXHHVKQXXPWPQHQXXXXXXXXXXXXXXXXXXXXXQTLVRDVDQRPSPLLSDYVPPAGFTHVNVPVLLQQTASAIVRWEELQKSLDVRSDSAPANLAAQAHVRSSLKRDLTNLTQLADAQTKHTQKLKFRQMQAMQQXXXXXXXXXXXXXXXXXXXQGVQPLPGGGNPARDGTGVGLDAAGAGVATGEAYDGFPPKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPTGAVLMQQGAXXXXXXXXAQGPGSXXXXXAPPPSNRHEGIRQRIDRTEPANKWIVLVDASLRLPPSDGTTFEHFTCMIQNFLNNYNGDVGAEVARALGSCLDPRVFDPTDIKRAQERMADICSRFQHGSQQ 1307
            MDMDIPLQ XXXXXXXXX    HHV+QXXPWPQHQ XXXXXXXXXXXXXXXXX   QTLVRD DQRPSPLLSDYVPPAG   VNVPVLLQQTA AIVRWEELQK+LDVRSDSA ANLAAQAHVRSSLKRDLTNL QLADAQTKHTQK+KFRQMQAMQ   XXXXXXXXXXXXXXXX QGVQPLPGG NPAR GTG GLD+A AGVATGEAYD FPPKR   XXXXXXXXXXXXXXXXXXXXXXXX          GPTGA+LMQQGA XXXXXXX      XXXXXAPP SNRHEGIRQRIDRTEPANKW+VLVDASLRLPP DGTTFEHFTCMIQNFLNNYNGDVGAEVARALGSCLDPRVFDPTDIKRAQERMADICSRFQHGSQQ
Sbjct:    1 MDMDIPLQQXXXXXXXXXR---HHVQQXXPWPQHQAXXXXXXXXXXXXXXXXXQQQQTLVRDADQRPSPLLSDYVPPAGLALVNVPVLLQQTACAIVRWEELQKNLDVRSDSASANLAAQAHVRSSLKRDLTNLIQLADAQTKHTQKMKFRQMQAMQ---XXXXXXXXXXXXXXXXAQGVQPLPGGRNPARGGTGAGLDSARAGVATGEAYDEFPPKRKQVXXXXXXXXXXXXXXXXXXXXXXXXNASSYAASNSGPTGAMLMQQGAGXXXXXXXXXXXXXXXXXXAPP-SNRHEGIRQRIDRTEPANKWVVLVDASLRLPPGDGTTFEHFTCMIQNFLNNYNGDVGAEVARALGSCLDPRVFDPTDIKRAQERMADICSRFQHGSQQ 381
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BLAST of mRNA_Ecto-sp13_S_contig6693.17576.1 vs. uniprot
Match: D8LB93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB93_ECTSI)

HSP 1 Score: 285 bits (728), Expect = 3.570e-89
Identity = 195/242 (80.58%), Postives = 197/242 (81.40%), Query Frame = 3 
Query:  585 LKFRQMQAMQQXXXXXXXXXXXXXXXXXXXQGVQPLPGGGNPARDGTGVGLDAAGAGVATGEAYDGFPPKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GPTGAVLMQQGAXXXXXXXXAQGPGSXXXXXAPPPSNRHEGIRQRIDRTEPANKWIVLVDASLRLPPSDGTTFEHFTCMIQNFLNNYNGDVGAEVARALGSCLDPRVFDPTDIKRAQERMADICSRFQHGSQQ 1307
            +KFRQMQAMQQ                   QGVQPLP G NPARDGTGVGLDAA  GVA GEAYDGFPPKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         GP GAVLMQQGAXXXXX   AQGPG      APPPSNRHEGIRQRIDRTEPANKW+VLVDASLRLPP DGTTFEHFTCMIQNFLNNYNGDVGAEVARALGSCLDPRVFDPTDIKRAQERMADICSRFQ GSQQ
Sbjct:    1 MKFRQMQAMQQQATEPAASAAAAVA-----QGVQPLPEGRNPARDGTGVGLDAARRGVAAGEAYDGFPPKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASSYAASNSGPIGAVLMQQGAXXXXXGVGAQGPGPG----APPPSNRHEGIRQRIDRTEPANKWVVLVDASLRLPPGDGTTFEHFTCMIQNFLNNYNGDVGAEVARALGSCLDPRVFDPTDIKRAQERMADICSRFQDGSQQ 233
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6693.17576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAZ5_9PHAE5.150e-15186.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB93_ECTSI3.570e-8980.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6693contigEcto-sp13_S_contig6693:2543..5529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1810
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_004740.1
Cds size1167
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463920.197511-UTR-Ecto-sp13_S_contig6693:2542..26851681463920.197511-UTR-Ecto-sp13_S_contig6693:2542..2685Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6693 2543..2685 +
1681463920.2454257-UTR-Ecto-sp13_S_contig6693:5029..55291681463920.2454257-UTR-Ecto-sp13_S_contig6693:5029..5529Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6693 5030..5529 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463920.2181485-CDS-Ecto-sp13_S_contig6693:2685..27091681463920.2181485-CDS-Ecto-sp13_S_contig6693:2685..2709Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6693 2686..2709 +
1681463920.228565-CDS-Ecto-sp13_S_contig6693:3385..35321681463920.228565-CDS-Ecto-sp13_S_contig6693:3385..3532Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6693 3386..3532 +
1681463920.2371745-CDS-Ecto-sp13_S_contig6693:4033..50291681463920.2371745-CDS-Ecto-sp13_S_contig6693:4033..5029Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6693 4034..5029 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6693.17576.1prot_Ecto-sp13_S_contig6693.17576.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6693 2686..5029 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6693.17576.1

>prot_Ecto-sp13_S_contig6693.17576.1 ID=prot_Ecto-sp13_S_contig6693.17576.1|Name=mRNA_Ecto-sp13_S_contig6693.17576.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=389bp
MDMDIPLQQQQQQQQQQQHRRRHHVKQQQPWPQHQAQGHHEVSKQPLPQN
PQQQQQQTLVRDVDQRPSPLLSDYVPPAGFTHVNVPVLLQQTASAIVRWE
ELQKSLDVRSDSAPANLAAQAHVRSSLKRDLTNLTQLADAQTKHTQKLKF
RQMQAMQQQATEPAAAAAAAAAAAAAAQGVQPLPGGGNPARDGTGVGLDA
AGAGVATGEAYDGFPPKRQQVVVQQPQQVPPSGGALRAVGGGGPVNASSY
AASSSGPTGAVLMQQGAGGGSGGGGAQGPGSGPGPGAPPPSNRHEGIRQR
IDRTEPANKWIVLVDASLRLPPSDGTTFEHFTCMIQNFLNNYNGDVGAEV
ARALGSCLDPRVFDPTDIKRAQERMADICSRFQHGSQQ*
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mRNA from alignment at Ecto-sp13_S_contig6693:2543..5529+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6693.17576.1 ID=mRNA_Ecto-sp13_S_contig6693.17576.1|Name=mRNA_Ecto-sp13_S_contig6693.17576.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2987bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6693:2543..5529+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCACTTCAATTTCCCACTGCATGACTGCTCAACTACTCTACGTGACCCG
CTGACCACCTGCACCAACAGCTCCGCAACGTTGCATTGCCCGCTCCACCG
TGCCGCTTTCGCTGTTGTGGAGTGCCTGATCCTGTCGGCAGGAATGGACA
TGGATATACCCCTGCAGGTGAATATGTTTGTCTAGTCCATAATGCGTGCT
GTATTTCAAACTTTAAATATATACAGCAGCCGTCAACACCTGTACTCTAG
TGTAAATCGACGTTTCCGTGTACACGATGTACGTGGATTACGACTGACGT
GCTTACCTCCCGGCTTGTTCGATCCTCCGCCGACTCAACCACATCACATG
TGCGCGTGTGCTGTTTCTTGCAGCAGGGGAGTGGTGATAAAATGATGTCC
AAAACAATAGACGATATAGAATAGGGTCAGTCGTCTTCCCAAGTTTTGTA
CTTCGTCACAACCGCCGTGTCTACTTCGCTGTTCGACAATCCCTTTCGCA
CTCCCGCAGAGTAGACGTGGGATTCTCGACAAGGTTCGGTAAGGTATAGT
AGGATTCGATGCCCTTGTACGACCCGCACCTAAGACTTCGGTGAGCTTAG
TGCAACGTTCATACCCGTACAACCCCACCCTTGGTGAGAGTTCGGTAAAA
TTATCGATACCGGTACTTGGATGCGTGTGTACCACGCCAACAATTCAAAG
AAACTAGTCTTTCCATGGCGAGCGTGGCGAGGCGAAGAGAAACGCCTTCT
GCACAAAGCTACCGGTCCGTTGTTCAAACCGCCATAACTTGACACAACCC
GACGTCGCTGTCTGTCTGCTCGTGTTGGGGAACAATGCGTTAGCAACAAC
AACAACAGCAGCAGCAGCAACAACATCGTCGGCGACATCATGTGAAGCAG
CAGCAGCCTTGGCCGCAGCACCAAGCACAAGGTCATCACGAGGTTTCAAA
ACAACCACTGCCGCAGAACCCGCAACAGCAACAACAACAGGTACGATTCA
TGCGAGCATTAGTACACGTTGATCTAACATCTTTGTTGTTGGCGTATTGT
ATTGATACATGAATTATTAAGTGTATAGTTGGCTTGGCGGTCGGAGTGCT
GTCATGAATTTTCCGCGATTTTCTGATATCGGAGAGACCTCATTTTCTGG
CAACTCTAACGTAGAAGTAAACTGCTGCTGTAACCTTCAGCGTCTCCAAT
TTAATGTTCCGGTGCTTCCTTCTTCCTTTTTGTTGCAGCGGGGGCCAGTC
CCGACTTGGCACGATTGTACACGACCACTGACTTCCTGTTGGCTCGGTCC
ATTCGATCATGGATGCTCTACCTTGTTTATGGGGGCAACGTGGCCGCCCG
TGTACGGCTGTCAACGCGTTGCACAAGCATGCTAGTGCCGCGCGTTTCCC
CATAGACTGCACAAGTGTGTTTGCTCCCTCCCCCGGTGCTCACGAACGCG
CCGTGCCACCAACGCAAACGCAAAACAAAATCATTACGCAGACGCTGGTG
CGAGACGTGGACCAGCGACCGTCCCCGCTGCTCAGCGACTACGTTCCCCC
GGCGGGCTTCACCCACGTGAACGTGCCCGTGCTACTCCAGCAGACCGCGT
CCGCGATCGTCCGCTGGGAAGAGCTGCAGAAGAGCCTGGACGTGAGATCG
GACTCTGCCCCCGCCAATCTCGCGGCGCAGGCGCACGTGAGGTCCTCCCT
CAAGCGGGACCTAACGAACCTGACCCAACTGGCCGACGCCCAGACCAAGC
ATACGCAGAAGCTGAAGTTCCGGCAGATGCAGGCCATGCAGCAGCAAGCG
ACGGAGCCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC
GCAGGGGGTCCAGCCGTTGCCCGGAGGGGGAAATCCGGCGAGGGACGGGA
CGGGGGTGGGGTTGGACGCCGCAGGCGCTGGCGTGGCGACTGGCGAAGCT
TACGACGGATTCCCGCCGAAGAGGCAGCAGGTGGTCGTTCAGCAGCCACA
ACAGGTGCCGCCCTCGGGGGGCGCGCTTCGCGCCGTAGGCGGAGGAGGAC
CGGTAAACGCTTCCTCCTACGCCGCCTCCAGCAGCGGGCCGACAGGCGCG
GTGCTGATGCAGCAGGGAGCTGGCGGTGGGAGTGGTGGTGGCGGCGCGCA
GGGGCCGGGGTCGGGGCCGGGGCCGGGGGCGCCGCCGCCAAGCAATCGCC
ACGAAGGCATCAGGCAGCGCATCGATCGTACGGAGCCGGCGAACAAGTGG
ATTGTACTGGTCGACGCGTCGCTCCGGCTGCCGCCCAGCGACGGCACCAC
GTTCGAGCATTTCACCTGTATGATTCAGAACTTCCTCAACAACTATAATG
GAGACGTCGGTGCCGAGGTCGCTAGAGCTCTCGGGAGCTGTCTCGATCCT
CGCGTGTTTGATCCCACGGACATCAAGCGGGCGCAAGAGAGGATGGCGGA
TATTTGCTCCCGGTTCCAGCATGGTAGTCAGCAATGACGCGGCCTGGCGT
CAGCCGAGGAGAGCGTGCTTTCATCCAGCCAAGCAGAAAAGCGGGCATCA
TGCACTACGCTGGTGGTTGGGCGCATGGTTGTGCCGACCTCTAACTGATT
GGTTGAGAGTTTTGGATGTGGGGTTTCATCAAGATTGGCCATATACCCTG
GCACAATCGTGGTTATGGGCAGTCGTTGTGAGGGCTGTTGGCCATATTCA
CTCGCTCATTAGTCGCCCATTCGCCCTAGTTCTTGTTTCAGTGCTGTCCT
CTGTCATTGATATGACATTGATCCGCGAAAAGTGTCTCCAAGGTCGGTGG
CGCACGGATCATTTGACGAATGGTTGCAGAATACAAGGCGCGTCAACAAG
CCATTAATTTGTTGTAGCGCCATCAAGGCGTGATGAAAATTGCAAGTAAA
GTGTGTGGGTGAATCAACTGCCAGCTGCCATCAGTGACGTTTCTGAAGTT
CGATTAGCTCACTCACTCACGCCGCTGGCGTGTTTCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6693:2543..5529+

>mRNA_Ecto-sp13_S_contig6693.17576.1 ID=mRNA_Ecto-sp13_S_contig6693.17576.1|Name=mRNA_Ecto-sp13_S_contig6693.17576.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1167bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6693:2543..5529+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACATGGATATACCCCTGCAGCAACAACAACAACAGCAGCAGCAGCA
ACAACATCGTCGGCGACATCATGTGAAGCAGCAGCAGCCTTGGCCGCAGC
ACCAAGCACAAGGTCATCACGAGGTTTCAAAACAACCACTGCCGCAGAAC
CCGCAACAGCAACAACAACAGACGCTGGTGCGAGACGTGGACCAGCGACC
GTCCCCGCTGCTCAGCGACTACGTTCCCCCGGCGGGCTTCACCCACGTGA
ACGTGCCCGTGCTACTCCAGCAGACCGCGTCCGCGATCGTCCGCTGGGAA
GAGCTGCAGAAGAGCCTGGACGTGAGATCGGACTCTGCCCCCGCCAATCT
CGCGGCGCAGGCGCACGTGAGGTCCTCCCTCAAGCGGGACCTAACGAACC
TGACCCAACTGGCCGACGCCCAGACCAAGCATACGCAGAAGCTGAAGTTC
CGGCAGATGCAGGCCATGCAGCAGCAAGCGACGGAGCCGGCAGCGGCGGC
GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGCAGGGGGTCCAGCCGTTGC
CCGGAGGGGGAAATCCGGCGAGGGACGGGACGGGGGTGGGGTTGGACGCC
GCAGGCGCTGGCGTGGCGACTGGCGAAGCTTACGACGGATTCCCGCCGAA
GAGGCAGCAGGTGGTCGTTCAGCAGCCACAACAGGTGCCGCCCTCGGGGG
GCGCGCTTCGCGCCGTAGGCGGAGGAGGACCGGTAAACGCTTCCTCCTAC
GCCGCCTCCAGCAGCGGGCCGACAGGCGCGGTGCTGATGCAGCAGGGAGC
TGGCGGTGGGAGTGGTGGTGGCGGCGCGCAGGGGCCGGGGTCGGGGCCGG
GGCCGGGGGCGCCGCCGCCAAGCAATCGCCACGAAGGCATCAGGCAGCGC
ATCGATCGTACGGAGCCGGCGAACAAGTGGATTGTACTGGTCGACGCGTC
GCTCCGGCTGCCGCCCAGCGACGGCACCACGTTCGAGCATTTCACCTGTA
TGATTCAGAACTTCCTCAACAACTATAATGGAGACGTCGGTGCCGAGGTC
GCTAGAGCTCTCGGGAGCTGTCTCGATCCTCGCGTGTTTGATCCCACGGA
CATCAAGCGGGCGCAAGAGAGGATGGCGGATATTTGCTCCCGGTTCCAGC
ATGGTAGTCAGCAATGA
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