prot_Ecto-sp13_S_contig12059.1757.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12059.1757.1
Unique Nameprot_Ecto-sp13_S_contig12059.1757.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length58
Homology
BLAST of mRNA_Ecto-sp13_S_contig12059.1757.1 vs. uniprot
Match: D7FM71_ECTSI (60S ribosomal protein L38 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM71_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 1.810e-30
Identity = 55/57 (96.49%), Postives = 55/57 (96.49%), Query Frame = 0
Query:    1 RSRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLAQSLPPGLHKKQLQ 57
            R RDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKL QSLPPGLHKKQLQ
Sbjct:   16 RRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQLQ 72          
BLAST of mRNA_Ecto-sp13_S_contig12059.1757.1 vs. uniprot
Match: A0A836CJ21_9STRA (Ribosomal protein L38 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ21_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.810e-18
Identity = 41/56 (73.21%), Postives = 45/56 (80.36%), Query Frame = 0
Query:    1 RSRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLAQSLPPGLHKKQL 56
            R +DAKSVKIK  K    TKFKIRCSRYLYTLCV DK+KADKL QSLPPGL +K +
Sbjct:   16 RRKDAKSVKIK--KTAEVTKFKIRCSRYLYTLCVADKDKADKLTQSLPPGLQRKDI 69          
BLAST of mRNA_Ecto-sp13_S_contig12059.1757.1 vs. uniprot
Match: UPI00083C7834 (60S ribosomal protein L38 n=1 Tax=Nicrophorus vespilloides TaxID=110193 RepID=UPI00083C7834)

HSP 1 Score: 78.2 bits (191), Expect = 8.310e-18
Identity = 38/55 (69.09%), Postives = 46/55 (83.64%), Query Frame = 0
Query:    1 RSRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLAQSLPPGLHKKQ 55
            R +DAKSVKIKNN   ++TKFK+RCSR+LYTL + DKEKA+KL QSLPPGL  K+
Sbjct:   16 RRKDAKSVKIKNNPKKNNTKFKVRCSRFLYTLVINDKEKAEKLKQSLPPGLQVKE 70          
BLAST of mRNA_Ecto-sp13_S_contig12059.1757.1 vs. uniprot
Match: RL38_BRABE (60S ribosomal protein L38 n=5 Tax=Eumetazoa TaxID=6072 RepID=RL38_BRABE)

HSP 1 Score: 77.4 bits (189), Expect = 1.590e-17
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 0
Query:    1 RSRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLAQSLPPGLHKKQL 56
            R +DAKSVKIK NK   + KFK+RCSRYLYTL +TDKEKADKL QSLPPGL  K+L
Sbjct:   16 RRKDAKSVKIKKNK--DNVKFKVRCSRYLYTLVITDKEKADKLKQSLPPGLAVKEL 69          
BLAST of mRNA_Ecto-sp13_S_contig12059.1757.1 vs. uniprot
Match: H3BEF3_LATCH (60S ribosomal protein L38 n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=H3BEF3_LATCH)

HSP 1 Score: 77.4 bits (189), Expect = 2.180e-17
Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 0
Query:    1 RSRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLAQSLPPGLHKKQL 56
            R +DAKSVKIK NK   + KFK+RCS+YLYTL +TDKEKA+KL QSLPPGL KK++
Sbjct:   23 RRKDAKSVKIKKNK--ENVKFKVRCSKYLYTLVITDKEKAEKLKQSLPPGLRKKKI 76          
BLAST of mRNA_Ecto-sp13_S_contig12059.1757.1 vs. uniprot
Match: A0A8C6FVY5_MOSMO (60S ribosomal protein L38 n=2 Tax=Boreoeutheria TaxID=1437010 RepID=A0A8C6FVY5_MOSMO)

HSP 1 Score: 76.6 bits (187), Expect = 3.210e-17
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 0
Query:    1 RSRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLAQSLPPGLHKKQL 56
            R +DAKSVKIK NK   + KFKIRCSRYLYTL +TDKEKA+KL QSLPPGL  K+L
Sbjct:   16 RRKDAKSVKIKKNK--DNVKFKIRCSRYLYTLVITDKEKAEKLKQSLPPGLAMKEL 69          
BLAST of mRNA_Ecto-sp13_S_contig12059.1757.1 vs. uniprot
Match: UPI001601EE84 (60S ribosomal protein L38-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001601EE84)

HSP 1 Score: 77.4 bits (189), Expect = 3.240e-17
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 0
Query:    1 RSRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLAQSLPPGLHKKQL 56
            R +DAKSVKIK NK   + KFK+RCSRYLYTL +TDKEKADKL QSLPPGL  K+L
Sbjct:   43 RRKDAKSVKIKKNK--DNVKFKVRCSRYLYTLVITDKEKADKLKQSLPPGLAVKEL 96          
BLAST of mRNA_Ecto-sp13_S_contig12059.1757.1 vs. uniprot
Match: A0A8C3T3Y6_CHESE (60S ribosomal protein L38 n=1 Tax=Chelydra serpentina TaxID=8475 RepID=A0A8C3T3Y6_CHESE)

HSP 1 Score: 76.3 bits (186), Expect = 3.720e-17
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 0
Query:    2 SRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLAQSLPPGLHKKQL 56
            S+DAKSVKIK NK   + KFK+RCSRYLYTL +TDKEKA+KL QSLPPGL  K+L
Sbjct:    9 SKDAKSVKIKKNK--DNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKEL 61          
BLAST of mRNA_Ecto-sp13_S_contig12059.1757.1 vs. uniprot
Match: A0A8C7DG53_ONCKI (60S ribosomal protein L38 n=5 Tax=Oncorhynchus TaxID=8016 RepID=A0A8C7DG53_ONCKI)

HSP 1 Score: 76.3 bits (186), Expect = 4.560e-17
Identity = 40/56 (71.43%), Postives = 46/56 (82.14%), Query Frame = 0
Query:    1 RSRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLAQSLPPGLHKKQL 56
            R +DAKSVKIK NK   + KFK+RCSRYLYTL +TDKEKA+KL QSLPPGL  K+L
Sbjct:   16 RRKDAKSVKIKKNK--ENVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKEL 69          
BLAST of mRNA_Ecto-sp13_S_contig12059.1757.1 vs. uniprot
Match: A0A4W6DZC8_LATCA (60S ribosomal protein L38 n=4 Tax=Percomorphaceae TaxID=1489872 RepID=A0A4W6DZC8_LATCA)

HSP 1 Score: 75.9 bits (185), Expect = 5.560e-17
Identity = 40/56 (71.43%), Postives = 46/56 (82.14%), Query Frame = 0
Query:    1 RSRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLAQSLPPGLHKKQL 56
            R +DAKSVKIK NK   + KFK+RCSRYLYTL +TDKEKA+KL QSLPPGL  K+L
Sbjct:   10 RRKDAKSVKIKKNK--DNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKEL 63          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12059.1757.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM71_ECTSI1.810e-3096.4960S ribosomal protein L38 n=2 Tax=Ectocarpus TaxID... [more]
A0A836CJ21_9STRA3.810e-1873.21Ribosomal protein L38 n=1 Tax=Tribonema minus TaxI... [more]
UPI00083C78348.310e-1869.0960S ribosomal protein L38 n=1 Tax=Nicrophorus vesp... [more]
RL38_BRABE1.590e-1773.2160S ribosomal protein L38 n=5 Tax=Eumetazoa TaxID=... [more]
H3BEF3_LATCH2.180e-1769.6460S ribosomal protein L38 n=1 Tax=Latimeria chalum... [more]
A0A8C6FVY5_MOSMO3.210e-1773.2160S ribosomal protein L38 n=2 Tax=Boreoeutheria Ta... [more]
UPI001601EE843.240e-1773.2160S ribosomal protein L38-like n=1 Tax=Branchiosto... [more]
A0A8C3T3Y6_CHESE3.720e-1772.7360S ribosomal protein L38 n=1 Tax=Chelydra serpent... [more]
A0A8C7DG53_ONCKI4.560e-1771.4360S ribosomal protein L38 n=5 Tax=Oncorhynchus Tax... [more]
A0A4W6DZC8_LATCA5.560e-1771.4360S ribosomal protein L38 n=4 Tax=Percomorphaceae ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038464Ribosomal protein L38e superfamilyGENE3D3.30.720.90coord: 1..57
e-value: 1.0E-23
score: 85.1
IPR002675Ribosomal protein L38ePFAMPF01781Ribosomal_L38ecoord: 1..55
e-value: 6.5E-26
score: 90.2
IPR002675Ribosomal protein L38ePANTHERPTHR1096560S RIBOSOMAL PROTEIN L38coord: 1..56
NoneNo IPR availablePRODOMPD010361coord: 1..56
e-value: 7.0E-16
score: 198.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12059contigEcto-sp13_S_contig12059:27..1302 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12059.1757.1mRNA_Ecto-sp13_S_contig12059.1757.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12059 27..1438 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12059.1757.1 ID=prot_Ecto-sp13_S_contig12059.1757.1|Name=mRNA_Ecto-sp13_S_contig12059.1757.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
RSRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLAQSLPPG
LHKKQLQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038464Ribosomal_L38e_sf
IPR002675Ribosomal_L38e